morexGenes - Barley RNA-seq Database

Contig contig_60165
Source Contig contig_60165
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_60165 (7086 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_60165

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71607	1	1338 bp	AK358798	Available	Available	None
CDS Structure of MLOC_71607

Contig Sequence (7086 bp)

>contig_60165 7086 assembly3_WGSMorex_rbca.fasta
CGTATGTAGTCCGCTAGTGAAATCGCTTAAAAGACTTANNNNTAGGAACGGAGGGAGTAG
TTCATAGTCGAATCTCTAAAAAGAATTATATTTAGGAACAAAATTAAAAGAAAACTTATA
TTTAGGAACGAGGGAGTACTTGATAGTTAGGTTTGAGTAGATGAACTTGCCAAGACATGT
CAAATGACGAAAATACACAACACGTCTTAACTTTGTGAGTTTTTGTTTGATAGCGCCTAT
CACTGTAATTTTCACAATTGATGGAAGCATCTAGTTCTCATCCAACTGATCTGGTCTTGT
TGACCCGAACAACAATTTCTATACTAGCGCCACTTCATGATTGTTTACAAATTGAATCTT
AAACAGTTGTCTGACCATGTATTTGTGTGTGCATAGACAGCCGTTTGGAAATTTGTCCAA
TCATATGAAATACACCGCACATGTTAATGTTGTGTTTGATGTTTTTGTGATTAAATCATG
TTCTTTCTAGTGCTGTAGACAGATAGTCACTCTAGCCAACAATTAAGGGTAGCAAAGAAA
GCACATCTAGCAAGGTCACTAGACTTCAGTTTATTAAGAGCTAAGATTTATTCATACAAA
AGAAAGTAGCTATGTAATCAACAAATACTCCACCTTGCTCGCATGGTGATATCATATATC
TGCATGCAGGTTCTCCACTGGCTTTGGTGTTTCAGGGGGTAGTACGCTTATCCACGAATT
TTATTCAAGAGAAGTACAGAGCCCCATTCATCTTACAGTTGACACTGGCTTCACTATGGG
GGAGGCTTCCATCAAAGCATATGTCTCATCCAACCTGTCTCTTGGAGATAGGCACCTTGC
CGCACAATTTCAGGAAATTCCTCTGGACCTAAAGATGCTTGATGCAGAAAAAGTTGGATG
TAAGTTTCACACTTGGAATAGTTCCACCATGTGCTCTATGTAAATTGACTGTTGATCTGA
CACTGAATTTTCAGAACTGAATCTTTTGTAGTAATAACATGTAATAAATTGCATAGAATG
ACCAATTGGTTGCATTGAGCTAAATGAGGCATTCTATCACAAAATCTACGAGCAAAAAAA
ATCTGATGAGAAGTTCAATACTCATCTGTCAGTAAATAACTTTCCCCTTTTCTGTTTTAA
AAAAGTGGAAACTAGCAATTTTAGTGAAAGGTTTCCGTGCTCTTGGAAGAAACAATTCCT
TTTTTCATTTGCATTAGTTCGGTACATTACTACTACGTGGAATGCTTACTGAAAGTATTC
TGTAAGTAATATTCTGGCGTCTTCGGAAATAGTATCTGTTCTACAAGGGAAACACTTTTT
TACGTGTTGTTACTCTTGCTGTTGACACAGTTGAAATGCTGAAATCTACAATGGTGGAGA
AGCTCCCCAATGATCTGGAAGGAATGGAGTCTTCAATGCAAAAGTTATATGCTCTTATTG
ACGAGATCTACAAATATGTTGATGATGTTGTGGTAAGAAATTGTCCCGCCTCTTGTCGTT
AATGTACTTTGTATCTTGATTGTAGATTCTTAAGGAAGTTTTCTTAATCATTTGTAGGAA
GCTCGTGTTGCACCGGACAACAAGATAGGCAGGTTCATTGCTGACACGGTCTCCTCCATG
CCAAAGCTGTCTCCAGCATCTTTTGACAGGCTCTTCAATGACAAGATTCAGGTAACTACT
TTTTCTGTGTTGGTAAATGGCTATCCTGGGATTCCCCGGCGGCTAACCATTGGCCATTTT
TCCTTACTGTTTGCAGGACAATCTTGCGCTTGTATACCTGTCAAGCATTACACGGACTCA
GATCGCGGTAGCCGAGAAGCTCAACACCGCTGCCCAAGTCCTGTGATTTCCATGTATTGT
TTGGGTAGCTGCCAAATTCCATGCCGCCTGTGCTTGGTTTTCGTTTGATTGAATGAGAGA
TCTGAATATGTTGTCAGAATATGCATTTTTGTACCTGTTATCCAAGTTCTAAAGAAAAGA
ATTTTCCGCGACTGACGAGATCCTAATGTTTGCACTAATGTGGGCCCAGACCTTTACATT
GGATTTAGTATAGTACTGTAGTACTTCGCTTCTGGATGAATATTTGTAATGCCTGATATG
TAGTTGTGAGGAGCAGTGAACGCTGGCTTCGTTTTTCTTGGTTTCCTTTGCACGTATGAT
CGGCCATATGAACAAATCAACATAGCCACTGCTGGATTACAGACGTTTCTCCATCTTTTA
ATTATTCTCGTTCATAAGCGTGTTGAGCTAGAGGTTGTATGTCAATGTTGGCAACGCAGT
GGCACTTGCTTTGGAGGCTGTAGATCAAGCCCTCGCGGCAGAGCATATTGTAGCTACAGT
CAAAGTTCGATGTGGCTGATGTACCTGAAGATCAGCTGCTCTGGGGGCTCCATGTTGGAC
AGGTCGAAGCTAAGAGCATCTCCAACAGGCGTGCAAAAACTGTTTCGTGCTAAAAGATTC
GTTTTTTGGGCGTCAGACAGCTTCAACAGACACTGTAAAACAGTACGCGTTAAAAACTTT
TGTGCACGTGCTCAAAAACGCTATCGTGCGCAGTATATTATTGCGTCGGCTTACGCGCGC
ATCAAACTCTAAGCTGTTGCAGGTGTGGCCGTTGGATTGGGCGCCACACTTGCGCGCGTC
TGTTGGAGATGCTCCAGTCCCCACGCTTTAAAAATGCTACAGTGACACGTTAATTTTTTT
ATTGGACGTGGATTTTTTGAGCTGCGGTTGGAGATGCTCTTAGGGAGTTGCAGGACACAG
TGCACTACAGTGCGCCGAGGCCAAAGAGGACCTTCAAGGAAAGGTTGAGTAGGGCGAAGA
AGATAAAAGAGGGTTGCAATGCCCTCGGATCAGAGCATCTCCAGCCGTTTGCCCCCAGCG
CACCCGACGAATGCCATTTTGGCGTTACGCCGACGCTTTTTTCGTCCTTGGGGTGAGCGA
GTTTGTAGCCGCGCCCCCAGGTTTTGACCCCCAGACGTCGACTTTTTCAGATTCTTCTTT
CCCGTTGCCGAAAAGATGCCACGAGTTCGGGATCGTCATGCCACAAATCGGCGATCAGTA
TGCCATAGTTCAGCGATCAAAAGGAAGGGATAATAGGGATGAAACGGATCAAACGGTCGG
TTCGGTGTGGTGCGGCTCCTTTGCCACGGGACTGGTCGGGTTCGTCCTCGGCGTAGTCGG
GCTCGTCATCGGCGTGGTTTCTACGCTCGGGCTGGGCGTCGTTGTGCTGCCGTCGTGATA
GCCGCTGTGGTCGCCGCCAACGCGGGCATCTGGCTTAAGATGAGGTCACGCTGCACTATG
TACCGCGCCTTCACCTTCTCGTTCATCGTCGATGTGTCTGCCCCCATCAAGAACTCCACG
TTGGTGTTCCTCTTCTTTGCAGCGACGTTGATCATCAACGCCGACCACCGCGCGTCGGAT
TTCTCCTCTCTCCTAGTAGCGCTGCTCTTGACTTCAGCGATGCATTGCTCGATCGAAGCT
TGCTGCCGTTCGGCAGCGGGCGCCGCGTCCCTCGNNGCCCTGACTTTTTTGGTGCCATCT
GGGCGCCCTTCCGCCGCAATCGGGGCAGGCACGTCCAGATTGTAGGTCTCCTTGGCCTTG
TCGAGAGCAAGTCGGTGGGGGAGGAACGTTGCAGCGCGCCATGCAGGAAGGTGTTGTTGG
GATTGAAACCGCCATGCGTGTTGCCGTCGGAGTAGCCAGGTGAGGGTACGTACCCCCAGG
GGCGGCATCGACGTCGAGAGGTTGACCGGCGACGCAACGCCCTGGCGGCCCCTCCATGCG
TCATGTGGGTTGCGGCCGGGTGGATTCATCATCCCCACACAGGGCGCCTCTTCCCGATCA
ACCGCCGCCGTCGCCGCGTCCCTGGTCCTCTTGGCGTCGAGCCTCCTTCGCCGGTCTGTG
TGACCGCCTCCTAGCGCGCGACATCCGCCCTCCACTCGGCGTCCGAAACGCACGCCGGCC
AAGCCATCGGCTTCCTCTGCTTCAGCTGGCTGAAATCGACAACGGCGACGGGGCGAGGGA
AGGTGTACTTCTTCATCGGTGGCATGGCGGCCGGATGGCGGGAGCGGGAGAAGAATGGCA
GGAGCGGAGGGTGGAGAATGGGGAAATGGAGGGAAAGGGAGGAGAAAGGGGGATAAAATG
GCGGGAATAGGCCTAGGTGCCGCCAACAGGGCGGACACACTCGGCTTTTCGCTTCGACCG
ACGCTCCCAGACGCCTTCCGGGGGGCTGGGTTCGACTCGGCTTCGTCAGCTGTTATTTTG
GTCCAGACCGACGCTAAACAAGGAGCTGGGGGCGCAACTGGGCTCTCATGATTGAGTGGT
GGAGAGCAATTTGAGTGAATCTAATTTTTCTTACAGCGAACCAGTAATAGTCTGCCCCAT
AAATTTATGTATAGTTAGCCGAGGTCAAGTTTGGAGCACTGCATTACTGTTTACAAGTCT
CCACAAACATGTAAGGCAGGTTCATCCTCTCTGTGGATTGCATGTTCATCTTAGAACCGG
AGTTCTATATGCTCCAGCCTTCGATGCTCTTTAAATGGATTGGTAATATGCATTGTACTC
CTTCTGTGTCTAAATAATTATAGTTGGAAAGAACTAGTACATGTTTATTTTTTATCGTTC
TGTGTAGTGATGTAAAGGAATATACATAATATGACCAAGCTGGCAAGGTGGCTACTAATT
TGACCTAGACAAGTAGCATGTAAATTCTCAATATCATGAGTTGGCACATAAACGGCTTAA
AATTATATCTGAATTTTGCAGTTGTTAAGTCTTCAACTCACTTTTCCATTTATAGAGATA
TCCCTACAAGAAAAAACAAACAAAACCTTGTTATAGGCTCAGCGGTTTCTGTACTTTTAC
ATGCAGCAATAGGCAAGGACCATCGACCATGCATGCATCATCTGTTACTCAAAAAATAAA
TAAAAAAATCTACCATGCATCTCAATTGTTGTCAACTACTAGATGGTACTAGTAGCGAGT
TAGTAATTATTGCATTCATGGTGATAGCTCCATATATGTATCCAGATCGAGAGAGTTTGG
AAACCAAACCGGATAGCCATATGTCATCGATATTTCAATGGGTTGATTAGTGTCACTAGC
TACACCTATGTAGAGGTGGAGCACACTACTAATACGCGATACTCAACACATGAATGTCTG
CTTCATACAAATCTATATGATCTCTTTGCATTTCATGCGTGCGGCTTGGGAGGCACCGGG
AATTCAAGATGTGCCAAAGCATTGCGTTGCACTTGAAAAATGCAAAGCGGCCGTGGTGAT
ACAAAGGGATCTTGCATATGTGTCATTTTTTTTTCATGTTGGACATCTAGATCACCTGTC
CATTTCTTCTTCTGGTGCCAAGGCTGAGAAGCAGCACCACTGGATATACTTGCAGAAGCT
GAAAATGAGCTTGCAACACAAGAGACATTGACAAATGCCAGGTGCCGATCTGCCAAAACC
GAGAAGCTTAACAATGTTTACCTGCTTAATTGATTAGGCTGAATTGGAAGGTGCCATGAA
TGTTAAAACCTGAAAGTTTGACAGGGCAACCGATCCACAATACTAGCTGAGCTCTTCCAT
GGATTTACACAATGTTTTGCAGTCATTAATCCTTGCATCAGGCGCTTCATTATTAATATG
TCCAAGTGCTTCGATGTTTTATACAAAAAAACACAGATAAACTGAATTTTGAGGGTAATG
TCGACTGAATGATGTATTTCTGCTGCTTGCCAATTAAGCTACCTTTATTTTCAGATTTAG
AATGCCTTCTTAGTTCTCAATCTACTTTTAGACAAAAAATTACTATTTTTAAGCGATCCA
TGGCATCAAACAAGACGAATGGGAGTAGCTCATCGCTGTGGCCTCCATCCGAAGCTATTT
CTTTGCTCCCCTCTAGTTAGAGCGAGAATATATATATATCATACTACTACAAAAAATGTA
TACATGACAATTCAGGTCACACACAAAGTCTACTAGTGGCTGGGGTGCGCCCCGGGCACA
CCTCTTGAGGCGTTACTGTACGCACTAATCAAGCTGCCGTAGTTGTTAACAAGTTGATAG
TGCAGATAAGCAAAAGTGGTTTAAAATATACCATAATTCTACTGATAGCAAATTAATAAT
GATTCTAGAGCATATAGGCGCAACATAAAATGTGTCAATATTTCCTTGCTATTCAGATCA
AAATAACAAACAAACGAGTCTTACAGACATTGAAATTATCGTCTAGCTAAACGAAGACCC
TTGCAAACACCATTTTGATCACACTACATACATCATGAAGCAAAGAAGAAAGTTATGATT
GCAAGACATGGAAACACCACCATGCATGAGGTTATTTTGACAAAGTTGGCGAACATGGTA
GCTGACCATCTCAAATGCCATCATCAGAATTATCCAAGCACAAGTTTCTTCTTTGACTTT
TATGCACTGAATTTTTCATGCTTTGCTCAAATCTTATTTTCAAGTCGCATCTCTCTTTTA
GGTTTCTCCCGAGCTTCATCAACATACCACTTTGTTAGAATAAAGAAGCATCTTATTAGT
AAGATTACAAGATCATTTCTCGGCAGTTTATTTAAATGGACCTTGTCGATGAGAAATGGC
CGTCGACCAGAAATGCTAAGTTCTATGTGAACATCTTCTTGTTGATCCTATCTACTACAT
GACTCATGTTCGACCTTTCGGTCCTCCGTGTTTCGAGGCAATGTTTGTACATGCTAGGCT
CNNNNNNNNNNNNNNNAGTATTCTGCATGTGTAAAACTGGCTTACACCCATTGTATGCAA
ACGAAGAGTCTATTACATCCAAACATCACGAGGTAATTACTTTTGCAATGATGCATACTT
TGAAAGAACATATTTTTATCTTGAAGGCCCACTCGGTAATACAATATCACAACAAGCTTG
TAAGCAATGTGACGAAGGAGTTAGTCACGAGATCTTATATTATGAAACGAGTAAAGAGAC
TTGTCGCTAACGAGATTGAACTAGGTATGAATATATCGACGATCGAAACTCGGGCAAGTA
ATATACCGACGGACAAAGGGAACTACATACGGATTAACTGAATCCTTCACATCGTCGGTT
CGACCG