Contig Data
morexGenes
Links



Map Locations of contig_6012 (4294 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_6012

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71594 1 2235 bp MLOC_71594.1 Available Available LOC_Os02g43350.1, FRAME:-1, EVALUE:2e-103, 13102.m04814 protein OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed
MLOC_71593 1 265 bp MLOC_71593.1 Available Available None





CDS Structure of MLOC_71594






CDS Structure of MLOC_71593






Contig Sequence (4294 bp)

>contig_6012 4294 assembly3_WGSMorex_rbca.fasta
CATCGTCGACTATAGACCCATCGGTCACATTCATCCAATCGCCAAGATTTTTGCTAAAGT
GCTTTCCATCAGGCTCGGATCGCACATGTCCACCCTCATCTCCAACGCTCAAAGTGCTTT
CATCAAAACACGAAGCATCCACGACAACTTCATGTACGTGTGAAACCTAGCAAGGCGCCT
TCACAAGAGCAAGACCCCTTCTCTCCTATTCAAGTTGGACATTCGCAGGGCCTTTGACTC
TGTCAAATGGGAGTACCTTCTTGACCTCCTTCGGAGACGTGGTTTCCCAAGAAAATTTCA
AGAGTGGATTGCGGCTCTCCTACGTTCCTCTTCTTCGAGGATCCTCTTGAATGGGGTTCA
TGCACCCATCAAGCATGGCCAAGGGCTGCGGCAAAGGGATTCCATTTCTCCACTCTTGTT
TGTCATAGCTATTGACCCTCTACAACGAATCCTTACCATTGCGACAAGAAACGGCCTGCT
CCATAAGTTGTCTGAAACCTAGCAAGACGCCTTCACAAGAGCAAGACCCCTTCTCTCCTA
TTCAAGTTAGACATTCGCAGGGCCTTTGACTCTGTCAAATGAGAGTACCTTCTTGACCTC
CTTCGGAGACGTGGTTTCCCAAGCAAATTTCGAGAGTGGATTGCGGCCCTCCTACGTTCC
TCTTCTTCGAGGATCCTCTTGAATGGGGTTCATGCACCCATCAAGCATGGCCAGGGGCTG
CGGCAAGGGGTTTCCATTTCTCCACTCTTGTTTGTCATAGCTATTGACCCTCTGCAACGA
ATCCTTAACATTGCGACAAGAAACGGCCTGCTCCATAAGATCCGTGGAAGAGGGGCCATG
GTGTGTGCCTCCCTCTATGCGGATGATGCAGTTGTGTTTGTAGCTCCGATCGATTCATCC
TGGACTGGCTATACATAAACTGGAGAATCTCTTATCAAAAATCCTCAGATGCCCATCTTG
CTTTACAACCAAGGGACTTCTATCTATGAGAAGAAACAAAGCACTTCAAAAAGTTCACAA
AGCGCCAATGGAAATATCATTTCATCTTGCTTTACAACCAAGGGACTTCTATCTATGAGA
AGAAACAAAGCACTTCAAAAAGTTCACAAAGCGCCAGTGGAAATATCATTTCACTTTAGC
TCACCTCGTAGATGCTGAGAAGTGAACAGTTCTCCTCAGCAAAATAACAGCCTGCGCAGG
TAGCTGAACCATGTAATGCAGATGGAGACTTAGTATATCGAGGCAAGGAACATTGTATGC
AAACCATATATGAATTATTTCTATTAATAATTGATGAGATGATAATGTAACATGAATCTT
TCACTGGGAGGGCTGAAAGAAAAGAATGTAGCAAGAGAAAAGAATGTTCTTTTACATATG
CACCACCCACCTAATCTCTATAACAACATTGTAGAGCCAATGGCCAAACAGATGGACTTA
CAATATTCTGGAGGTTAGAACTCGATAATCCGTATATATATACAGCATCACTTGGGCATG
TGGACTTTCATTGAATCCTTCCGGATTTACAGAGTTTTAGCGGTTGACGCTAGGTTAAAT
TAATTAAGGCTAAGACTCCAATTTATACTCCTGATGCTAGGGGCCTACTTCCAGCTGAAG
AACATGTTCTTGCTTTCCTGTAATAAAAGAGGTCAATTCTTCTGGGGCAACGACAGACTT
AAGCCACTCTTGTAGCTCCTCGCCTTCAACCTTTTCATTCTCTGGAAGGAGTATGGAGAT
GAGCAGTTAGACATACCACACATCAAACAATTGCCATGTAAGCCTTTGTGATGCATAGCT
CATGAAGAAAAGTGCGCCATAAAAGTGTAGGCGGATAATTTGTCAAATTACCTTCTAAAT
ATGCTCCAAGTCCTTCCAAAACTGCTGGATTAGCACGGATAACTGAAAGAGCAACTTCAA
GTGCTGATTGTAGAAGTGCTTTTACTTCCCCTTGGACAAGATCAACCAGATGGCCCTGTC
ATTATTTTTGAATATGAGCTTAGTAGGCAGCTTAACAGTTTGATCTGCAATTGTATGGAA
CTTTGAGACAGACCTGGTCCCTTCCAAATGGAGAGCCTCCAGAATCATCTAGCCCGCCAT
TTGACAATGTAGCTAGTGATATTGGACCTATGCGCTGATTAAGACCATACTCTGCTACGG
CTTTGTAAGCCATGTCAGTTGCACGCCTGATGTCATCAAGTGCCCCAGTAGAAACCCGTC
CTGCTAGAACTATTTCCTCTGCTGCCCGCCCACCCAGAAGTGTCACCAGACGGCCACGCA
GTTCATCAACAAAGAGCAAATATCTATCTTCTGTCGTGGGAGGAGTGTATGTAAAGCCTA
GTGCACCTCCTGACCTCGGCAGTATACTCAATTTCTGGGGAAATAAACAGCAAAAGAAAC
TAAGACCAATTTAGAACTATCCTGACTGTTCTTATCAATAGTTGTTTCAATTCAAACCTC
CACACGTGGCTGGCCTGGCAACAGATTTGCTACAGCAGTTCCCACAACTGCATGACCAAC
TTCATGCCGTGCAACAACAGCCTTTTCATTGCCCTTCAGCTTTACATGTTTTTTCTCTAT
GCCCTAAGAAATAGACTTCACGGTTAACTTCACAGTAGCAAAGAGAATTATAATAACTAA
TAACAGGAACAACCATCTCTCACGGCAATATCAAAATAGAGCAAGGAACAACAGTAAGGC
CATGCCCTGAGGGCAGAACCCATAAACAACTCCTAGAGAAAGACTGGGGTGCTATTATGG
TCATGGGTTGGGCTCTGTGGCCGGCCGCCATGCCTAAGGCAGCAATAGGTATGCCCATCA
CGGAATGACATAGAATAGAGATGATTAGTTTCGTACAGCTAGTATCCCTTGAGGAATAAG
GATACGAGTACACGACTAGCAGTAGTTGCAGCAGGATATGTGCATGTGGCATACATGGAC
AGGAAACCTGCTAGGTTAGGAGACTTAACCCAGGTGATGGGATTGCACATCCACTCCACC
ATCCAGGTGATATTTGAGTGCCAGCAAATAAAAAAAAAATCTCCAAGAAAATTCTATCAC
GAAACCAGCATGGATGTGAACAGATCAATAGATACAAATTCACCACACAGGAGTTAAGCA
TTTAACTGACAAAAACACTGTTTGCTTGATTGCATACTCTAAAGGGGGCAGTTTGCATAT
AAAAATCACTTCTGAACACAATTTTGAATATTCGTTATGTGTGTTAACATTGAGTGTCGT
TTTTAACCAAAACAGAACCCAAAGAGACCCGTAGGACTGGAAGAGCCTCTAGTCCTTGGT
GCAATTCCATGGCCAGGGGGGAGTGCGGCCCTACCGGCTGCAGCATTGCCTCCGTGGCAA
GTGCTGGTAGAGAAGGGTAGGGGATTCGAGAGGAGAGAAGGAGATTAGGAGATTAGGCCT
CGATTGACTAGAATCTTCTCCGGCACCGTCGCCAGTCACCAGCAAGAGCGAGGTAAGATA
GATCCGGCGAACTCTGCTGCTCTCTAGCATAGGTGCTTACTAATGCTTTCTGTTCCTAAT
TTGCTACTGCTTGCTAGCTGCTACTGCCATTGATAATTGTATCTTCCTATTTATCATGTT
ATATTAGTGGACTTCTGCATTGTTTGTCTATGGCCATTGATAATTCAGAATTGGAACTTG
TTGGGACTTGGAAGTTTGGAACAGGGAAGTATATATTTATTTGGTAAGCCCAAGCCAACT
TGTTTACTGTTCTCCACTTTTCATGCCTGTCTATCTCAAATCGACAAAGTCTAATATCAT
ACTTATGATATATTTTCTACTCCCTCCGTACCTAAATANNNNNCTTTTAAGATATTTCAC
TAGGTGTTTATATACGGAGCAAAATGAGGGAATCTATAATCTAAATTATGTCTATATACA
TCTGTATGTAGTCCATTAGTGAAACATCTAGAAAGACTTATATTTAGGAACGGAGGAAGT
ATTTTGCATACACCATGATGAGTTGAGGACCTGGATGACCATTTAGGACTTGAAAAGAGG
CATGAAGGAAATCAGGCAACCAATGGGGCAGTATTTTGATCTCATCTCACACATTCTATT
ATGTCTTGTCTTTATTATTTGTCATTTTATAAATTATTATTTATATATACTCGCCGTGTC
GCCGTATTGCTGTTTCTAGAAATTGCTGTATCCCATACCGCTGTATCGGTGCTTCATAGT
TGCACTTTATCATGTAATCCTCTGTGCATTGCACAGTTAAAGACTAAGATAGATATAACT
TGAAGCTGAATACAATATACTCCCTCCGTCTCAA