morexGenes - Barley RNA-seq Database

Contig contig_60059
Source Contig contig_60059
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_60059 (8747 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_60059

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71558	1	1622 bp	MLOC_71558.1	Available	Available	LOC_Os04g49950.1, FRAME:+1, EVALUE:5e-14, 13104.m05107 protein OsFBX150 - F-box domain containing protein, expressed
CDS Structure of MLOC_71558

Contig Sequence (8747 bp)

>contig_60059 8747 assembly3_WGSMorex_rbca.fasta
CCCGTTACAACGCACGTGCCATTTTATTCATTAGCCATAAGTTTCCATACATGCTCGTGC
TGATCAATCCATTCCTCTAAAAACATGATACCCTCTTTCACATGCTTCAGATAAGCTATG
CACATGCCATCTCGCCAAGTACTGATAACATGTTTCATTTAAGAGATCATATGAGATTTG
CATAATCGTTTTGAAAATGGACAGGGGATCATCGACGCCGGTATCGAGCAATGGTGAACC
GATGAAGAAGGCAATTCAAATAGGGTGATGCAGGACATCCACACCGGTCATGACCAGCGT
TAGAGGATGGGTCGTTAGGACGGAAGGAGGAAGGCAAAGAGGAGGAAGAGGATGGATCAT
AAAATTTTATCACCGATAAAAAACAGATGGCCGATGCATAGTCGCTCTCACAATATGCAC
TAAAGAAAATGGTTATTTTCATGTATTTCAAAGGCAATATTTATTTGGAAGACTTCACTC
ACTTACTCATCAGTTTGACTTATTTTCCTGTATTTCATTCGTAGCAACTTTTTCTGTATT
TCATCTGTAGCAACGCACGGGCATTGTACTAGTTTCTTATATATGTTCCTAATATTAATC
AGAGACGTGTATTAGCATGTGCAACTTCACTAGTCTGCCATAACGAATCCAAGACAACGT
ACAAACAACCGTCCACCCTGGCACCAAATGAGCCATATAAGTAAAGCGAACCACAACATT
TTCTCATTGCTTATTAATGAAACAGGCACGTTACAAGCTTACATTTGAAAGACATGACGA
ACGACCCACAAGGGCCGCAAAACCATACTGTCGCGCTGCTGTTGAGCATGATACTGTCGC
GCTGCCACCGCAGCGGCTAGGGTGGAGTGCCATACCCCAAACTCTCCGAGCTCGGGCTCG
CCGGCTGCTCTCCCGCGGGAGGTGCAGTGGCACCATTCGACTTAGTCGCTCCAGTGTCAC
CCGCACCGACATGCGCATGCACGGCCGGGACGCCATGCACCGCGGGCTCATGGGCGCCAG
CAACCACCGGTGTGTGCGTGCTTGCAACCTGGGGCGCGTGTCGCGGTGGAAGATAAAAGC
CTGTGATCGGGGGAAGGTCTAGCACTGACGGAGCGTGTGCGCCGCTGGGCACTCTGGTTG
CAGGCAGCGGAGGAATGCTGGCACTCGTGTGCGCATCCGGCACTGGTGGCGCGCGCCCGC
CACCACCGGAGACTCCGGCTGCGCGTGGCGGTGGAAGATAAAATCCCGTGATCGGGGGAA
GCTCTGGCGCTTGCGGCGCCTGTGCGCCACCGGATGCTCTGGTTGCCGGCGGTGGAGGGA
ATCTGGCACTCGTGTGCGCATTTGGCGTCGGCGGCGAGCCTTCGACACCACCGGAAACTC
GGGCTGCGCGTGGTGGTGGAAGATAAAACCCCGTGATCGGGGGAAGCTCTGGCGCTTGCG
GCGCCTGTGCGCTACCGGATGCTCTGGTTGCCGGCGGTGGAGGGAATCTGGCACTCGTAT
GCGCATGTGGCGTCGGCGGCGAGCCTTCGACACCACCGGAAACTCGGGCTGCGCGTGGTG
GTGGAAGATAAAAGCCCGTGATCGGGGGAAGGTCTGGCGTTGGCGGCGCGTGGGCACCAC
CGGAGGCTCTTGTTCCAGGAGTTGGAGGCGTTGGCGGCGCGCGTGCACCCCCACCGGAAA
CTCTGGGTGCGCGCGGCGGAGGAAGGTCTTGCGCTGGCGGCGCATGTGCACCACCGGACA
CTCTGGTTGCAGGCGCTGGAGGGAAGCTGACACTTGTGTGGCCCTCTGGTGTTGGCGGTG
CGTGTGCACCACCGGAACCTATGGCTGCGTGCGGTGTAGGGGAGCTGACACTCGTGTCCG
CCTCTGGCGTTGGCGGCGCGCGGACACGATCACCACCGGAAACTCTGGTTGCGGGCGGTG
GACTGACACTCGTGTACGCGTCCGGCGCTGGCGGCGCGCGGTCGCCACCGGGAACTCTGG
CTGCGGGCGGAGGAGGGAAGCGCGCGCTCGTGTGCTCCTCTGGCGCCGGCGGCGCGCGCA
CACCACCACCGGACACGGTCGATCTCGGGCCGGGTACCGAAACGGAGGGGACACGCGGCG
GCGCCCTCACGCTCGGGTGTCGGTTGATCACGTCGCACTCCTTCTGCAGCCTGCGCGGGA
GGAGCACGCCGACGATGGAGCTGGTGACGGGGTCGCAGAAGACGTCGACTTCGCCGGCCG
CCTCGCAGCACGGGTGCGGCACGGGGCTCCCGGTGAAGAAGGACGCGAGCAGGTCGTGCT
TGCACGTGCACAGCGTCGTGATCGACTCCCAGCACAATCCCGGGTCCAACAGGGGGTCGG
AGGGGAAGGCGTCGACGGTGAGCGAGCGCCGGGGCGCGGCGGCGAGGGCGACGTGCGTGA
GGCACGCTGCCAGGAGCGCGGCGAGGATCGTGGTTCTCATGGTTGGTTTGGCTGCGTCGA
TCGCTTTCGTGTCTGGAGCAAAGGTTGCCGGGGAGGGAGGTGTGATTTATAGGATGCTAT
CGCAGGTGCTCGTCCTTGCTTGCGACCTATAGAGCTGTGCTTGTTCGACAGTTTTGTGTG
TTAGCACTAATTACGCTTAATTAGCAGAAGACTGATGCTAGTTAATGTGGATATGTAACA
AACATTTTTTCTTTTGCGGCTTCTTCATATATATTGTCATTACGGGTACTATAGCTGTTT
GACTATGAACACCAATTGTCATGAATTAAAAAGAACGTAAGTGGTTAAGAACACATAGAA
AACGCTTGATGAATTGCTTTATGGAGCTACTACTAGCATATATGCATTTAACGTTAATGG
AAATTATATATGCAAGCAAAATCTTATGTGCACACCGGAAAGCAACATATAGGTTCTTGG
TTTCGTCGCGTACAATCAATCTCTATTTTTCCGTTCATAGATCGAAGGCATTTTAAAAAA
TTGTTACATCATCGTCCTATATATTATTCAAGGGTCCTGATATTCATCACACGTGTGGCA
TATTAGACATACGTCCATATATCATGTGTGGCAGACATAGCAGGCAGCCCATATGGATTG
TGTGTGGATGAACAATACAATTGTTCAAACGTATGGGCGCGGCTACTTCGTGCCACACGT
CCAACAAGTACTAGTCATCCCCACTTACATGTGTGGCACGAAGCAAATCTGCTTACACGT
TCTCGCACAACTACGTTAGTTATCCGCGGGGTGGCACTTTAGTTACCCTGGGAATGGCAA
CTCTAGTTATCCCGGATGACAACTATAGTTGTAGAAGCATGGCAACTCTCTTTGTTTTGG
ATAACTATAGTTACCCGCGGGATAACACTTTAGTTACCTGGGATAGTTGTCATGTGTGTT
TACCTAGTTGTCGCGTGTGGTTCAACCGTAGTTTCCACGTATGGTTAATCGTAGTTACCA
TATGCGTTTACCTGGTTGTCACGTATGGAGCAACTGCAATTGCCATCTAGCAACGAATCA
TAGTTGTCATGTATGTCTACGTAGGTGTCACGTACGCGCAGTTGCCATCTAGCAACATAT
GAGTGATGTGTGGGTGAAGAGCAGTTCGCCCACACGCGAGGACTAGGTGATGATTGTGTG
GGCAGAAATTGGTTCGCTCACACGGCGTAGCTAGCAATCCCACGTTTTGGGTTGTGTGGG
CGAACTATTCAACGTCCACACACACGATGATATCTACGTGGCAATAAAATTTCAACAATT
TTTTTTAAAATTCGTGTAAAAGTAGAATCAACGTGAATAGAGGCGTGTTAGTGAAGTGCA
AACTGTCACAGGCGTTATTCTTTTTCTTATTAAATCTATTTTCCATTCAATCAAGGGATT
TAAAGGTATAAAGTTTCCGAATGTTCTTCGAAACAAGAACCACTTTTTCAATCCTGAAGA
ACTTTTCGAATTTTTTATAATGTTTTGGAGCACCGCGAATAAAATTTGAACCAGAAAATT
CTATTAAAATTCACAAATTTTTTTTGAAAACTCTAACTACTTTTATAAAACGCTGATTTG
AAATTGTGAACATTTTTTTAAAACAAGAACATGTGTTGAGAAGTCAGAACAATTTTAGAA
ATGTATATATTTTAATGAACATTAATTTGAATTGTGACCAATTCACTGAAACAAGAATAT
TTTTCCAATTTGGAGCTGTTTTAAAATTCTATTTGCTTTTTAAAGTCTTGAACTATTTCT
AAAAATATTAACATTTTTCCAAAAAAAGTGGGAAACTTTATTTTCAATTTTCTAATATTT
TTAAATACCAACAAAATATGAAATTCCTGTTTTCTTTTCTATTCTTTTAGTTTTGAACAT
TTCTTGAAACTTTTGAATTTACAAAATAAATTAAAAATGAAATTCAACTTGAAATGCAAA
AAGAGAAAGAGAAAGGAAAATAAAAATTGAAGTAAAACATGAAAATGAAAAAACGGGCCA
TCCTATTCTTGGGCGCCCTGTGCGAGGCACCGACTATTTATCGCATAGTGCAAAAAATAG
GATTTTTCAAGTTATGTGGGAGAGAGATAAGTGGGCTGGCTTCGCTAAGGATGGCAATGG
GTAGGTATGGGCAGGGTAGACCAATATCATACTCATACCCGTATAGTTAATGGGTATAAA
ATTCTATCCATACCTATACCCACGGGTATAAAACTTTACCTGTATCCATACCCGACAATT
ACCGGTACCCAGCTGGTAGAACAAATAGTACACAAGTTCTTCACAATTTTCACTCAGTGA
TAGCACATTTGACACAAAATTGAATTATCTTGGCTCGATAAGAGGTAGATGAGTACATGA
CCATGAGCAAAATTGAAAAATCACAACATACTCATAAGTTAATAGGAGTAGATGAGTCAC
ATGACAAATTAATGATTAATTGACGATAACATAACATTACTTCACAAATGAGTAGGGTAT
GGGCATACCCACTGGTACAATGCTATACCCATACCCTACCCATGATTTAACACGTAGGGT
ATGGGTACTACCCATGGGTATAAAATTGTGCCCATACCCTGCTCATGTGGGTACGGTACC
CACGGGCACCCGTACCCGTGGGTAAAATTGCCATCCTTAGGCTTCGCTAGGCCACAGCAC
GCGGCCCACGTATGAAATTCTCGAGAAATCATTTTTTAGTTTCTAATAGATGAATACACA
AAAGTTTAGTACGGCGCTAGGTAGGAAAGAAATATTTCAAATAGACGAACACACAAATTT
TAGTACCATCTTGGGTAGGAAAAAAATATTTTCAACGGTGAACGAATGAAAAAATCAAAA
AAACGCATCTTGCTTTATTAGTAGGTATAGATATGCTTTAATGTTTGACTAGTATGATAG
AGCATCACTAACCGGACTTGACAAATTCGCCCCCCTATATGCTCGCGGGCGCATCCACGG
ACAGCGCCCGCCGGCCCCTCATATGTTGCTTCTCACATTCACATACCTCAAATGCAATCC
TCAAATCCATGTGATTCATGCACGTCAATCATCCGATACAAATTGTCTGAATTCAACAGT
TCAAAACAAAAGCAAATGAAATCATAGTTCAACAACCCAGACATACCAAAATGAAATCAA
TGTTGGAACGACAAGGAGTGCTTCTCCGATCACTAGCTGAACAAGTTCATCGATGTGTCC
TACTCGTCCCCGTTTTCTCGGTGCCCTTTTTCTCGATGCCGTTTATTGGATCCAAAATTG
TGTCGAACCAAGATGTAACCAACAAGATGTCCTTAAATCTTGTGAAAGTCGGACCTCTTG
CCTTAGCCGTCTTTCTCTTCTTCTTCTTCTTGCTCGGATTGCAAATGGATGTTGTCTCAA
CTACAAATGTGGTGATCTGCTCCAATTCATAATCCATTTCGTCCAGATCTTGATTATCAC
TGGTTGTGCTTGCCAAGTACGCCTCCTACACGATCATGGTTTGCACACATTCATCATGTG
CGAACTAAATCTATGCAAAACATTGAACATTTGATCAGACATGAGCAAATATAACATACT
CGGTCTTGTTCGGACATTTCGTCGAACATATGGAGTGCAGCCCGGACGATGGTGGCCCCC
GTGCTCATCCGCTCCCGAACGAGCAGCGTTGACTCACACTCATCGACTGTCGGCTTCTAC
ATGGACAGTAAGCTATCCGGAATGGCCTAGCCGGCCACCGCATGCTCCTCCATACCATTA
GTGCCAAACTACATCATTCGCGTCGGCGCGTGGATGGATATCTGCACCTAGTTGTGCCAC
CGCCTCTGCCTCGCTCTCTCGCTACCGATCGAGGATGGGCTGGAAGACATCACTGCGGTG
GATCGGGACCGATGGTGAGCATGGGGAAGAAGGTTGTCTGATGGTGAGGGCTCAGGCACG
GGAACTGTTGGAGGGTAGCAGGAGGAGGAGGAAGGGTGTGGAGGATTTGGGGCAATTTGT
GGTGAGGTTGAGTTGTCGGGTCTCACGTGGTAGGCGTGCCTGGGCTCCTTCATATCCCCC
TCATATTTGGACTGGATATGAGCAGTGTCGGTCAGCCCGGGCGTTTGAGGCCCATTTAAG
AAGTTCGTGTGGATCGAAATTTCGTGACGAGTGAGTGACCGCGCGGCCTTCCCGGGCGTA
TGAGGCTGGTTTGAGGGGTTCGGTTGTAGATGCTCTTAATTACCTATAGTACGTACATGA
ATTGGATGTAGATGTACTTCAGAGAATCTACAGCTCGGCACCCTAAACCCCCCGTCAACG
CTTGGATGGGCTGCCAGTTACAAAATTTCGACCCACGCGAGCGTCTCAAACGGGTCTCAA
AAGCCCGGGCTAACCGACACCCCTCATATCCAGCACAAATATGAGGTTATGGGGCGCCCG
GGCGGGCATAGGTACGCCCGCCATGTAGGAACCGACTACGTGATCCACTGCAAATTGCAC
TAAATCCAGCCCGCCCTAAACTGCTGGATCCATTTATTCTCTGCTCTCCTCTTCCTTTTC
TGCATCGTCCGTCTCACAGCTCCTCCGCCACACGCACTCCACAGCCCCCTCCGTTGCCAA
CTCCGATAGAGCAGTCCTCTCTCTCGTCCTCACCGTGGGGGCGTCATCGTCGGCCAGGAT
GCCATCGTGGTACGTCCAGGAACTATCTAGCTCCACCTTGCTTGGATGTGTTTAACACAT
TGCCTGACCGTATTTTTTGTGATTTTATTAGAGAAAAAGATGGATTCTAATGCTTCGTCC
GACAAGGAGTATGGATCGGCGGAGCTTGATAAAATTATTCAAGATGAGTTCTTTCGATTC
CTGGAATTCAGGCGAAGAAGTGGACATGATCATGCGCATGAGCATGCAAGAGGAAATGGA
CTAGCAAGTGAAGAATATTCTCGACTTCAACGGCTCAATAAAAGGGAGAAGAGTGATCAA
TCGGGATAGGGTGTCCGGAGCTCGGCTACTGTAGAGGGACTACTTTGCTCCGAAACCTAC
TTTCCGAGATGATCCATAGTTTCGTCGCCATTTTCGCATGTGAAAACCATTGTTTTTACG
CATTGTGGTATGATGAACAAGGTTCAATTTGAGGTCGTGAAAGGTTGATCTAGAGGAAGA
ACGTCGACAAAAATCTGTGAGAAGCGGTCGTGATAGGTGGCGAAGTTCGTCGGCGAGTTA
CGATCGAAATACAGATGTGATCGAGTTGTACATGACAGAAGCAATCGGAAGCAGCCGATT
GATTGGTCGGTCGCAGAGACAGTGACGCGTGTACCTGCAGCAGGCGACTAGTACATCGGT
GGGTTTCGGATCGGATCATGGTTATTTTCGGCGAGACTGAATCGAAGCCTAGGTGATGGC
CAAACCAGGCCATGCACGAGTGACAACTGTTCCATGAGGATCGGAGCCCAGGGCCAGTGT
TGTGTGGCAGACCACGTGGAAGCTAGTGCAACAATGGGGCGCTGGGTTGGCTGTGTATGG
CCGTACGCGCTGCATGAATCGGGAGCAAAGTGAGATCTGTTTGAAAAAGATATTGGTTCC
TAGGAACTGCTGCAATGTGTTGGAACATGAGATTCATTAGCTGCCATGACATGTTAATCT
CGTGCGTGGCAAAAGATTGAACAAGAAAATTAGTCAAGAAGTCATATGGTGGTAATGGTG
TGGACGAAACTGCTTGAGTTGGTTGCACACATACACAAGAGACTACAGGGACTACTTTTG
GGTTCTTCACTTCGTACGCCGAGGAGATGGCGGGATGGCAGCAGTGGTGTTGTTCGACTG
GCAGTTAAACGGGAACTAAGGATGACGACGTGCGTATAAGGCTCGGAGGAGTCTGGAGCG
TGTTGTGACAATATCATGCATACACAGGGCGTCAGAGCAATGTACGGAGAGATGTGCGGG
CGGACACTACGCAGAGTGGAGCATGGTTGCAGTCAGATATTTTCGACTGGGTCAGACTGG
ACTGTTTGACAGATCAACGGGGATGTCGGTCAAAGCAGAAGATGGTGGTGGGATTGGTGA
CGACGACATAGGAGCGTGATGCTGATGGTGACCAACTTCTGGGCATGGAAACACGTGGTG
CAGGTCTGGTGGCTTGTGTGGTTTCGACAAGACTATGGCGCGGGGTTGATTCAAGGTGAT
GTACACACGGAGCTTGAAGTTGACAGGGCGCAGGGTGGACTGATCATCTACCATGGAGTC
ATTTTGAAGGTGGAGCTGGATTGAGGGGCTACGGTGTAAGGATCCGGAGATCGCAGCCTA
TTCAGCGGGAAAAGCGAGTGACACGTGGTTTGGACTGGAGCTCGGTG