Contig Data
morexGenes
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Map Locations of contig_60054 (5439 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_60054

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71554 1 1633 bp MLOC_71554.1 Available Available LOC_Os04g56350.1, FRAME:+2, EVALUE:1e-43, 13104.m05864 protein nucleolar protein,Nop52 containing protein, expressed
MLOC_71553 1 1043 bp AK370236 Available Available None





CDS Structure of MLOC_71554






CDS Structure of MLOC_71553






Contig Sequence (5439 bp)

>contig_60054 5439 assembly3_WGSMorex_rbca.fasta
CCTTCGTCACGCCGCCGTTACACGAAGTTCGACGCCGCCGCCGCCGCCGCCGCGGGGGCC
GCCGCCATCACGCGGCGCTTGGCCTCCTGCAACACCGGCGCCCGCGAGCGCGCCGTCCGC
TACCTCCTCGCCGACTTCCTCCCCGCCTCCGCGCCGCACCTCTCCGACATCGACCTCCTC
AAGCTCTGGAAGGGCCTCTTCTTCTGCTTCTGGCACGCCGACAAGCCGCTCTACCAGGCC
GACCTCGCCTCCCGCCTCGCCGCCGCCGTCTCCGCCGCCGCCACGCCCGCCGCCGCCGCC
GACTTCCTCGCCGCCTACCTCGCCACCATCCGCCGCGAGTGGTCCTCCATCGACGTCCAC
CGCCTCGACAAGTTCTACCTCCTCAACCGCCGGTTCCTCCACCACGCCTTCCTATTCCTC
GGCGCCCGCTCCTTCGCGCCCGCCGTCACCGCCCAGATCGTCTCCGTCATCTCGGAGAAG
GCCGTCCTCCCGGAAGCCGACAACGCCACCGGCCGTGGACTCGGTTACCATGTCGCCGAT
GTGTTTCTCGACGAGATCTTGCCCATGCTCCCGGTTAGCTTGCAGTCGATGGAGCTGCTG
TTGGCCCCCTTCTTCACTGTGCTGGAGAAGTCCACCGACAGGGTGCTGGTGAGTAAGGTC
AGGTCCAGCTTGTTTGAGAGGTTTCTGGTGAGCGGCAGTCAGCTGCTCGAGATGACGAGG
AAAGGTGAAGAGGTGGAGAAGGGGAGTGTGGAAGAGAAGCTTGGGCAGGTTGGCCTGTTG
TTTGGATTCAGCAAGAGATTCCTGGATATTGGGGCGAATGCTGAGACCGTGCAGGGGAAT
CGGAAGGTGGTGTTTGGGCTGAGGGATGCGTTCCTTAAGCTCGAAAAGGGATTGGAGCTG
TCTGGGGTTAAGATTTCTGAGCCAGAGTTTCAGGGCACTCAGCCACCAATGGTGGCAGTG
GTAGAAAATGGCATGGATTTGGATGAGGCAAAGGTGGAAAAGAAGAAGAAGAAGAAGAAG
GCAAAGAAGGCTGCATTAGCTGAAGGTGGGGAGGAGGAGGATGAGGTCAAGGCTCCGAAG
CAAGAGAAGAAGGTGAAGAAAGACAAGAAAAAGGAGAAAAAGGAAAAGAAGAAGAAGAAG
AATAAGGTGGAGGATAGTGATGGAGGGGATAGCAGTGAGCAGAGTATAGATGCCACATCA
GAGGACCAGCAGATGGGCGATGACACTGATGCCATTACATTTGATGACGCTTCGATGTCC
AATCTTCAAAAGCAGTTTGAGAAGGTTGCTGCAGAAGCAGGGATGCCGGTGACACCAGTT
ACTGCAATAGTGGCAAAGAAGAGGAAGCGCTCAAAATCTGCAGATAGGTCATCAGAATCT
TCTGGTGGAGATGTTGGTAGCAAAGGCAATGTTCCTGCTCAGGATGGAGATAAGAGTGGT
AAGAAAGTGAGGTTCTCAATGAAGAGTAATCTAGTTTGGAACCCTCCGACTCCTTTACCA
CCACAGTGCTTGAGGCTCCCACCATCTGCTACCCCAAGAGGGAGTGCACTAAAAAGTGGA
GTTCGGCCTGGGCCTATAAAGGAAAGCTCTACGCAGGTGAAGAAGGCCAAGGCAAAAGCA
AAGTCTGCAAAGAAGGTGTTGAAGAAGAGCCCTTCCTCGGCTGTGAAGCGCTTGCGGAAG
TTGCAAACCTTCTCTGCGTGAAACTCTTGAATGTATGATGGCATGTTGGCCGTTCCATTC
TGCCTTTTAAATTGTGCTCTCCATAACTTGATTCTTCTCCATTAGGTAGTCTTATACACT
CTTGGCTTGCTACCTTTGCATTATTTATGGATTGCTTAATTATGTGTCTTGTCATAGTGC
ATTCTTGATAACCATGCGATGATTATTGTTTCGTAGTAGCAGAGCCCTTTTGCTTTTTCG
TTCTCTGATAAGTCCCTTTTGGTTCTAACTTCATATCTTCTTTGCATCATGGCAATGGCT
TAGTGCAGTTCATGATTCCTTTCGAGGAAGTTAGATATAACAATACTTAGGAACTTTGCA
TGATGAAGATAACCCTTGATATGTTTTGCTTGTATACTTTGATGGGCAATGTCCCCCCTG
ATTGTCAGTATATTTTGATGGACAATACTTATGGGCTGCTTTCCACAGACTGCAGGCACA
ATTTCGTATTGTTAGTAGTGAATCAGGCTGATGGTTCTCTTTTTTCCTTTTAAGTTAAAC
ATCACAAACTAGAAGCCTTGCATGACGAAGATAGCCCTTGATATATTTTGTTTCTGTCAG
TATACTTTGATTGCCATCCCCCTTGATTGTCAATATATTCTGCTTCTGTCAGTATACATT
GATTGCTGTACCCCCTGATTGTCAGTATATCTTGCTTCTGTCAGTATACTCTGCACAATA
TGTTTGGCTGGATGTTCTTATATGAGATTGTTGTGGTAAGTAGTTTTGATCTGGTTTGAT
CTGTACTTGTGAAATTCATCTTGCAATTCAGAATGCATTAATTGGGTTGTATGAATGATC
ACATGTCCCAAGGTAGTAAAGGTTATTTTGTTCCAATACCCTTAGCCCAGGATGTACCTT
TGTAATCTTACATTTTGAACTCACATGCTCATTGTCAAATTTGGTGACTAAAAACCATAT
GCATCTTTGGTGATGCCCCCCTGATTGTCTCTATAAATTTGCTTGCCATTGTGCTCTGCA
TAATATATTTGGATGGATGTTGTTACATGAGATTTTTGTGGCAAGTAGTTAAAACACTGT
TATGGGTTGTGCATCTGTGTTGATCTGGTCCCAAAAATGACCAACTAGATAGCTTCTGCT
CAGTGGTAAATTAAATCTGTACTTGTAAAGTTCATCTTGCTATTCAGACTGTTACTCCGA
TTAGACGAATGATGATGTCTTTGGTTATTTACGCTGACCCTGGGATGTACCTATGCAATC
TTACATTCGTAACTTGCAAGCTTTATTGTTGAATTTGGTGAAGTTGTGTTGGTTTATCAT
ATCAGCCCCGTGACTAGCAGTTATATGCATTTTGCCATCTTGTGATTTGCCGATGTTTTG
ACGGTCGTCTGGAAGAATCCAGGCAATGCCTGATCTATTTGTTGCCTTTGCCCCGTTCAG
ACTTTTGTCTAGGTTACGCCGAATTTCTCTTCGTCTGTGTCGCTGATCATCTCTGAACTG
GAACTTTTGGTCCTGCAGAACTAGTGTTTTGCCCTTCAAGGTTCCGGCCTGAGCTTCAGT
ACCGTTGCTGGCAAAAATAGGGTGTCGTTGTTGACTTCTTGTTACTATATTTTGCTGTCT
CTTCGATTTCATTCATCCATGATAGAGCAGCTCCACATTGCAGGAAATGTCGCTTAACTG
GGATTTGAATGCATATATTTTGAGTTGTACTATGGAGATAAGTTTCTCTGTGTGGTGTAC
GGCAGTATCATCGTCTCGCCAAACTTGCATTAAGCTATTGAAATTTGAGAACAATAGCTT
CATCTATTTTTAAGCACTAAGTACCTCCATTGCACCGCTGAAATCTTTATGCTGTTTAAC
GTCATTACATTAAGAACATCTTTAGCAGACCCCGTAAAAGCGCAAATTGTAAAACTGAAA
TGCGGGTCAAAAAAAAACATTTTAAAGGTTCATTTTAGCTACGGGCGAACAGAAATTATA
AAACAAACTATAAAACAAGGATAAAGAGCTCCTTCCTTTGGTCCGACGCCCGTCGCCCCT
TCCTTTAGTTGGCCGTGCCAGGCATGCCGGCCGCGTCCAACCTCGTCGGTCGCGCCCCGT
TGCTCGCGTCCCATCACCACGCCGGCCGCGTCCAACCTCGTCGGTCGCGCCCCGTTGCTC
GTTGGCCGCGTCCCATCACCGCGACCAACCTTGCCGACCACGCCTTGTCGCCCGCGGCAC
TGTCCTGCTCTGTTGCGAGTTGTGCCCCTTTGTCGGCCGTGCCGGGAGGATTCCGACACC
CAGGCTGAGGTCGTGGGAGGCCACGACGAGGTCGAGCTCGTCCAATTCAAACCGACGGCG
ATCGATTGCGGCGTCTAGCGGTCTTTTCCGGCGTGCGGTGATGAATTCCGGCGAATTTAG
GGGCACGAATTCTGGTAAACTCCGCGGCGACGTGTTTGCTCCGACGAGGTTTGACCGGTA
TACGAGGACCCCTCGGATCGGCCTTCTAACCTTCAAATATAAGGGTTTCGGGTGTGACTT
TTTCGTGCCCCTTAAAAAGTTTTACGAGTTGGACCACTTTTACGGTTTCTGTTATGGATA
TTTTTTTCGATCAAAACTGTAAAACGCAAATATTTTTACGGGTTTGACCACTTATACGGA
GTCTGCTAGAGATGCTCTAAGCTTTTCCGTGGCCCCATATACACCCTCCAAACATAAACC
ACGGCACATTGAATACAAAACGATACTGTCGGAGCATCTTCAACGCGTCGACCCAAAACG
GGTCCGCTTTTTGTCTGTTTGGGTCGTCCGCCGGCCTTTCCTTGTCCGTTTTTTAAATGA
GTCAGCACATACATTCAACGGGTGGGTCCTCCGCCGCCCTGTCCGCGGGTACTGTGATAG
TAAAATAATAGAAGAGAGGTGGGTGAAGGTGGGTCAACGAATTAAATAAGTAGGCAAAGG
TGAGTGGATGACCATGTGACAAGTGAGTCAGGACGGACACATGCAGATAACACAGGCACA
GAAACGCCCGCTTTGTGTCCGCCGTCGATCTAAATATAACCTAAATTTACGTTTAAAATG
GGTCTGTGCGGACAAAAAATGGACCCAAGATGACATGGGTCTCTGGGTTGGACCATCAGT
TTCATATGTGCCGACCTATGGTGACGGGACGACGAAATGGGTACGGCCGTTTGGTTGCTA
TCAACACTGTTTTGTCCCTGTCACTCGATTTATTCGTCATTAGTAGTATCAGTACATCAT
CCTCACTATTAGTACAGTAACTCGACGTTGCAGTGTCACATCGGGTGCTTTCCATGCATG
TACTATGAGATACTGGGATGCTTTTTTTTTTTTTGCGTGGCAGACGATATACCAATTGGT
CACACCATTTCACAATTCAAATTCCAGAAGGAAGTACCGAAAATTAGCTCGATCAAAGAA
TAGGTTTCCTCTATTTTTAAGATGCCGGCTGACCTCCACTGCTGGCGCCTCGAGCACGCA
CGGCCTGCACCACTCGTACGCCGTGCCACCGGCCATGGAACCTTTCCTTTTCCTTCCAAT
GGTTTGACTTAAGGGGGCGCCAACCATGACCGAGAGGAGATGATGCTGTCGTCGGCGTAC
TCCACGCCGGCCGCCGACGAGTTGGGAGGGCCGCCCCCGCTGCCGCCGCCGCCGGGCGCG
GACGTGTCCGTCATCGTGGGCGCGCTCACCGGCGTCCTCCTGGGTCTCTTCCTCTTCCTC
ATCTACGCCAAGCACTGCAGGCAACGCGGCCGCGGCGGC