Contig Data
morexGenes
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Map Locations of contig_59838 (6036 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_59838

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71446 1 1773 bp MLOC_71446.1 Available Available LOC_Os01g57630.3, FRAME:-1, EVALUE:2e-165, 13101.m06117 protein pentatricopeptide containing protein, putative, expressed





CDS Structure of MLOC_71446






Contig Sequence (6036 bp)

>contig_59838 6036 assembly3_WGSMorex_rbca.fasta
AGGAGACCAGGACGCACCGGCCGTCCGCACCGGCGCCCTCACTTGCGACGAAACCGGCAG
TGATGGACGGCAACTTGACCTGGGTGCCTGACAGGTAATTCATCCCTAATTCCCTTCTTA
ATTGCTCTCAATTGGATTGAATGTGAATTGATAGTAGTATAGTCTCTAATTCATGTCCTA
TTAATTTTCATAGGATGGACAGTAGTTCAGCTACTAGAATTAATGTCCGGGTGTGTGCGT
ATGCTGAATTTGGCGATAATGGGACACAAGTTTGGCATCCAATTAGGGACGAATTGAAAG
TTCTAGACAAAGATTGTGTCAATTTCAAAGATTTCAGTGAAGAACTTTCCGTTTTGGGAC
ATCCAGTGTGTTCTGACAAACGTGCCACAAAATTATAATGGTACCTGGCAAAGCCACAAT
TAAGCGGTGTGTTTTGGCAAACACCGGAAAATAACGGTGTCCTGTAGCAAATTTTCCCCA
ACAACAGTGGAGACATTCAGTCCAGACGCTATAATTGACAACCAATGAACATAGGTACTC
TTTTTTTAGGAGAATAAAAGTACTCTGTAAGCAAGAAAAGCGACCAAATCTGTGTACATT
TGAAATGTCATGGGAGTAATAATATGCAAAAGAAGCATATTCTCATGCAGTCATGTGGTT
CTTACATCGAACTCGAATAGCTAGTAAGCTAAAAGGATAGACGACCCAAGTGTTCCTGCA
GGCAGATATAGCAAAGACAGCAGAACATCATCATCATCATCATCATCATCATCATCACCC
CACAACCAACAGGGAAAAATGGGCTCTTGTGAGTTGGAGATTGTAACAGATTATGTTCTG
GCATTGTTTAGTATTTTTTGGGACTTACAACACCTTCCTGATTGTTTTGAACCATCGGGA
CTTGCAGCACCTTCCTGATTGTGGTCAGTTTCACCAATAAAATTGGGAGCGCCAAATTCC
CAAAATACACCAGGTAAAAAGATGCAATTTTATATGACAGCAATCTGAAATGACTAACTA
CCAAAGATAAGAAACTATAAGAACAAAAGCTTTGCGCATTGTACATCAGGAAACTTACCT
ATAAATGGCCTTGAGTACAAAATGTTTCTCATAGCTTCAGTAAGAAGCAAGCTTTGTACA
TCAACATTAGGAAACTGACGTGCCGAAGGCCTGAATAATAACCTTCTGAACAGCACACAG
AAAGTAACAATCTCCTGCCAGATATGCTAAGTTTGACATGAACAAATGGAAAGCACAGCA
CTGAGCACTCGTCGGGTGATAAGGTGCAGCATCAACCTGTCAACCCACCAAGGCTCGAAC
CTGGGGTGGCTCACTACCTCTAATTAAAAGAAATGCACAAAGAGTAAGATTGCCGGCGTT
GTACAGGTAATACTTACTTCATACATGATTCTAGTCCTAACATTTGACAACACTATCGGT
ATTTTGATATAACCACAAAACTATTGTTTATTTGATTATTTGACAACACTATCGGTATTT
TGATATAACCACAAAACTATTGTTTATTTGATTACATGCTTAATTTTTTTCATAGTTTGA
ACTCTCGGAAGAAATATCAGGATAGTCTCAAAGCCTAGAGGTTTCGTACTGAAGTCAATT
TCATGACAAAAAACACAGCCTTTATTCAAACGAGTAAATATGGTAAATGCTAAAGTGCAT
TCTGTGTATATTCTTGATTAAAGGAGGTCAGCTCCTACCATCTTCTTAGAAAGCAAGAAT
CTGACGAGAAACCAGTAGTTCACCTACTATCGTAATTCATACAATTCTTCCTTGTTTGCT
TTACAACTCTACTAGCTCGTTATATGATCAATACGAAGATCAGTTCAAAAATGGTGAAAA
ACAAAGCTCACTACAGCAAATGAAAATAGTACTCAACAATACAACGAATCCATTCTGGAA
TGGAGCTACAACTATTGACTTCTTGTTTGGTAAACTAGTAACCTGAGACCTGACAAACTA
CTATCAAAGCTAATCATTGATCCAATACCTTTTAGCTTCATGTATGTCATAACATTTGCA
TTGTCCATGCTTCAAAGAGAAATACTATAATAAACAATAAGAATCAACAAAGTGGGAGGT
ATGTGTTTATCTTCATCACAGAGCTAACAGTTGAATCATCAATGGCTAGAAAATAAAAGT
ATCCATAAAGTACACGAGGATGTTTCCAAACACAAATACTCCTCCGTCCCAAATTTGTTG
ACTCAGATTTGTCTACACACATATGTATCTAGACAGGTTTACATCCGTATCTAGACAAAT
ATAAGGCAACTAATTTGGGACGGAGGTAATATTAGATTCATACAAGGAATTGGATGCAAT
GAGAAAAGTCAGCACAAGCAAGGCATTGCCATAAGAATGAAGACTTCCTGTGGATCTCTT
CTAAAATGGATAAATAGATTTTCAATAAGCATTACAGCACAGGGCAAGCTTAACCAATAC
CTTATTAAACTAGTTAAACCACTACTTTAACTTGCACTTCTTGTTCCATCATGCCAACAG
AGAAACTGAGTAAAACAGGTCATGGTGAAATTTGGCATGCATCAGTCAAAGCCTGACCTA
TGAATTTTACTTTTCAGCCTCGTGTTCCGTTTCACACTCCTTTTCTTCTGATATTGCTTC
TTCCTCGTCAGTTTCAGCTCTTAATTCACTGCCTTTTGTACTATCTGGCATCCTCAAACC
CTTTCGGGAGTAGTACTTCTTCCGCCCGAGCTCAACAAGCTTGGCAGCCTCCTCCACCCT
CGATGCATCTACCAAAGCATTCACTACATCCTGCAGCACGTCACACTCCACTCTACAGCT
CCTTTTGCCACTAAACATTTCATAACAGTACCTCAGTGCACAATCCAGATCACCAGCCTG
CAAAAGGTGTGGCACGAGAGTCTCATATGTTCCCTTATTTGCGGCACACTGATTTTTTAC
CAAATCATCATACAGCTTCTTGGCCTCCTGTAACCTCCCTTCTTTCAAATATCCTCGAAC
CATCTCATTGTAGGATACTGTATCGGGTTTTGGCCCGTCCTTCTCCAATCTCTCAAGCAC
AGCAGCTGCATCATCAATCCTCCCTTGTGCAACCAAACCCCGCAGCTTGGCATTGTAGCA
CTTTGCATCTGGCTCCAAATTCCTCTCCTTCATCATCTCCCATACTGTCTCTGCTTCATC
CGTGTGGCCATTGTTGCAAAACCCATTCAGCAGTGTGTTGAAAGTAATAATGTCAGGTGT
AACACCTTGCTTCTCCATGAGAAGGACAGTGTCAAGAGCAGCTGAGATGTCAGACTTCTG
GCACAATGCACGGATGAGTATGTTGTAAGAGGATACGCTGGGAACAATCGAGGGGTGGGT
GGCTGGGATCTCCTGGAATGCAGCAGTGAGCCTGTCAAAATCTCCGGCTTCGGCGTACGC
GGAAAGAACGGAGTTGAATGTCATGGTGGATTTATGGTGCGCAGGAAGTTCATGGAAGGT
TGCGGCAGCGTGGGATGGCATGGAGGCACGGCCGTAGAGGCGGATGAGGCGCGTGGCGAA
TCCCTCGGTTGAGGTCTCGAGGAATGGCTTCTGTGCTTCGAGGATGGTCTCGATGGCGTC
TTGTCGGCCGAAGGAAGTGAGACGGCTCACCGCTACCTCGTACACGCGTTGCCGGTCGCG
GAAGCGCGACGACACGGTTGACGCTTGGACGAAGTCGGAGACCAGCTTGTCAGGGTCGCG
CTGCCGGATGATGGCCATGAGGGTATCGTCAAGGGGCTTCCGGAGCTTGTGGTCCGCGTC
GGATTCAGCTTTGGCGGCGGGCTGTGCGCCGAGTGGCTTCGGGAGCTTCTGGCCCGCGAT
GGGGTTGGCATCGGCGGCGGGCGGTTTCGGCGTCGGCGTCGGCGCGCGCCTGGCCTTGGG
ATTGCGCTTGGGTGGTTTTACGACTGGCGAGGAGGAGGAGAAGATGCGGGAGAGGCTGTT
TGCCCGGGCGGCGGCGGCGGCGGCCATGGGAAGGCGGCGGGTGGGGGCGGATGGGAGCGA
GAGGAGCGGAATGGGCGAACGAGGGTTTCCCCGCTCATTTTGATGCATTGCTTCTTAATT
AGGCCGTCAAAATGTTAGCCCGTCTGACCGTCTCCCAATCAAGCTCAGACTAGCCCAGCC
CAGGCACAAAGAAAGCCTCTGATGCACAGGCCGGTCCTATTTGCCGCCTCACTAATTAAA
AGCTTTACTAAAAAAAGTAGTACTCCCTCTGTTCCAAAATGCTTGTCTTAAATGTTATGC
TCCCCTCAAATGTATCTAAATATTAAAACATGACTACATACATTTATATCTAGATAAATG
GAAGTACTTAATGCTCCCCTCAAAAAAAGAAAAGTTAAAAGTTGTCCTTCAAAAGTTTAC
TCCACGTCATCAGACGTTCACGAGTACACTGTCACAGCCTGAGAGTTTTTCCACTTTTTA
AAGAATTTTTTATTTAAAATGTTTTATCTCTTAAACCATGTGTCTAAATCCCGATTCATC
ATTGAATTTCTTATGTTGAAATCTTTAAAACTGATTTCATATTAATAGGTTTTAACGAAC
TTATTTAACGAAAAATCCATAAAAAGGAAAAAAATAGAAAAAAATAAAATCAATAACAAC
AAAAATATAAAATAGAGCAAGAAGGGACATGGAGTTTTTGCTCCCGAGCTCATATGCTCC
CTCATGAACAGTAAAATCTAAAATTTAGTTAATTTTTTTTAAAAAATGAATTTTTTTGGT
AAACTTTTACAAATGTTTTGTATGCTTGTAAAATTTCAGCTCAAAATAACATTTGTGAAA
GTCAATACTCCAAAAGTTCTAGTTTTGAATACATTTTGGATTGTTGATTTTGTTTTTTCC
GTCGCCACTTCCACGAATGTTATTTCGTGCTGAACTTTGGTACGCATGTACAACAATTTT
CAAAGTTTAAGACAAAAAATTCAGATTTTTTTAACTTTTTTATTATTATTTTCGATTTTA
CTTTTCACGAGGGATCATTTGAGCTCGGGAGTAGAATAGGATTTTCGAGCTAAAAGCACA
TTTCTTCTTACTTTTTTCCCTTTTCGAGAAGCACAATTTTTCTTGTCGCGGAAGCAAATT
GTGCCTCCACAGGAAGCAAGGTTTTTTCACTTATTGAGAAGCATCGTTGTGTATTTTTCA
CGAAAGGAAATCCGTGTCTACACGAGGAGCAAATATGTGCATCTTGTGAATGATGTGCTT
CTCGCAGAAGCACATCAGTGCCTTCATGAGAAGAATTTTTGTGTTTTTTGTGGAAGCACG
GATTTTTCCCTTTTCAAGTAGTATGTGACTCCACAAGAAGCATATTTGCGCTTCTCACTG
AAGTAGAGTTTTTCTTTCTTTTTGGTGAAGCATAGTTATGCTTCTTGCGGAAGCAAATTT
ATGTCACGACGAGATGTTCTTTTTTAGAAGCGTAATTTTTTTCCAAAAAAATTCACGAAA
CTTATTTCAATTCAAAACCTAAGAAACACCAAAATGTAAAAAAAACAGAAAAATAATAAT
CTAAAATCCAAAAATCAAACAAAAATATGAAAATAAACGAAATATAGAGGAAGTGCCCAA
CATGCGACAACTAGCGGCGGCTAGAGGCACCTTGACGTGCTCCCAAGGCACCAAAAGTGA
CCCCTAAAGGCCCCCCCGCTATGCGTAACCTGCAGTTAGTTCGAAATCACTAGTTAACGA
ATACATCTTCCAACGATTACTTCCACCATCACAGGTTGTGACAACTGGGGTTTTTCCTTT
TTTTCGTAGATCCGTATTTTCAAAACATTTTATCTCCTAAACCGTGCGTTCAAATCTCGA
ACCGTTTTCGTCGTTGACTTTCTCGCGTCGAGATCTTCAAAACTAGATCCCATGTTGATA
AGTTTTGACGATTTTTTTTTCATGAAAAAAAACCGAAAGAAAAAAATCGAACGAAAAAAC
CGTGTGTCGGGACCCCGATCGTGAGTCATAAGAACCTAGCGTGTAACACATCACATCACT
TTGCGGCCTCACGCACGGTGACATCCACGGCTACCA