morexGenes - Barley RNA-seq Database

Contig contig_59818

Source Contig contig_59818

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_59818 (3451 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_59818

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71432	2	1502 bp	MLOC_71432.1	Available	Available	LOC_Os06g22440.1, FRAME:-1, EVALUE:1e-118, 13106.m02411 protein SAM dependent carboxyl methyltransferase, putative, expressed

CDS Structure of MLOC_71432

Contig Sequence (3451 bp)

>contig_59818 3451 assembly3_WGSMorex_rbca.fasta
GAGAAATAGCCCCGGTTCATGATTCGAGCCGGGGCTAATCCCCCCCCCCCCCCGCTCCCC
CCCCCGCCCCGTGGAAGGCCATTAGCCCCGGTTCGGGGCCGAACCGGGACTAATGGCCCA
ACCGAACCGAGGTTAAAGGCCATTTTTCTACTAGTGATACCTTCAGTCTCAACAAAAAGC
GTAAATAACCACTTGCTCAATAGGCATTTGTTTTTTACCTCTAAATTCTCAATACCTAGC
CCCCTTGATCCCTAGGACGACAAATTATATCCCACTCGTAGCCAATGTCAATTGATCTTT
CTTCTCCTCCATGGGCACCTTAGGATCTTTTAGCTCAACAACATCTCAAACCCCTTGGGC
ACGGTTTGACACTTTCATCTTGATAGACCATGCCAAGTAGTTGCTCTTTGTGAGCATATC
ATATCTAAGAGAAATAGTTACTCTTTTTCCATATCTGATCCATGCTAATAGCCTAATACA
CATGTATCCGATGCGAATCGTTAGAACCACTAGGTTCTCAACCCAGGGCTCTCGATGTTT
TCTCACACACACATGCACACAAGGAAATGTTGTGAAGCTCTTTAGGTTTATTTCAATAGC
ACAAGCTTACATGTTACATATGAGGTGCATCTCCTTATATGGAGCCTATAGGGCTGGTGC
AATGACCCACCTGAGACAATACCGACATTGCGACAATAGCGGAACTCAGAGCTAGCTCAT
CTAATGCACAACTCATACCCAAGTAGAGACACATCATATATAGCTAGGGATAACTACTGA
GTGATGAAATATTCCATGACATCATATTATTCTTGGCTAAGGTTTCATGACGTCCCTCAT
CATCCAACTCACTATGACTTATTCTTTCTCATGCATGCATATTTTATTATATGGCAAGAT
TAGTTCTAACATATATTATTAGACCAAACTTTTGGCCTGGAAGAAAGCATGAGATTCACC
ATTGTCAAATGTGATGTACCTTTAAGTACATGATAATCAAGCCTTTGCAAGGGATACAAC
CAACATAACATAAGGGCATCTGGCAAGCTCGTCTTGGAAGCTTCCCTCATGGATATACCG
CCGCTCCGCGGTCCTCACGAATTCATCCATAACATATCCAAAATGTTGGACTAATACTGG
CTCAAACAAAGATCTCAAAAACATTGCGAACTTGTGTGGTGTGTTGAGTGTAGCTTTCAT
ATTGGTTCTAGGATCATTTTCCCGCATCTCTCTGATTGAAAAGGAGCCCTCTTCTTGGAT
GATCTCTCTTAGTTCTTCGTCGGAAGGTTCATACATTAGCCCATAGAAAGAATCAAACTT
CTCTTTATCAATCACACCCTGTTAATATTACCATAAGATCATGAGGTCAAATGCAATACT
AGCACCGTCGATTGCAAAAGATAAATGTTAGAAAAGAAAATAAAGAAATGTACCTCCGAG
ACCATGACACATAGAATCTGGGAAACAATTTCTAAAAGGTAAGGGAATTTTTTGTCGAGT
ACATTAGAACACCTCCCTAGTAGTGAAATAATAATACGACCTCCTGAGACCAACTCTTTG
GCTCTCAGCTCCAGAAAAAGTGTGAAATCCTTCCTGAACTGTTCTGTATAGGCCCCGAGC
ACTATAGGAAGCCTTTCATGCCTGGAATGCTCATCAATGTCATATGCTGGGATGAGATTC
CTTGTTAGTTCTTCTGGAGCCTGTAAAGATAATGTTGTGCTTAAAGAGTTGACGAGTAAT
GCAATAGGAACGATCCATCAAAGTAGAATCAGACTCACACCTTCGAGAGCCAATGCAAGC
TATTGGACGAGCAAACAAGATGCACAGATTCACTAGTGAAGAGCCGCTCATAAAACGATC
CTGGTGTGATACCGGTCACGACAACAGGATCGTTGCTTTGACGGAGAGTGACGAGGCTCT
TCACCACCGTGTTGAAGTCATTCTCAGGAAGATCGTTAAGGAACACAGAGACTTCTGGTG
GTGGTTGCTGGAACTGAAGACAGTGAGAGTGGATTGCCTCAATAGCAACCGACACCAGTG
CAAGCGCGTTTGGACCAGTGGAGCAGCCCAAGTCCGCGATCACCATCTTTCCGGACAGCA
AGGTGCCGGTGTTGCTGCATAGTTCTACGATGACCGCTTCAATCAGGGCTTTCATCTTCT
TCTGCTCAGCGTTCTGCAGTTGACATGTACTTAATCAGAAAAACGAAATCTATCTCTATT
CTGCTCAGTTTAAATGTCCGTAATCACTACAAACACGGATGTTGAAAGAAGGCATGCATT
TTGACCGGGGCGTTTTTCCAAATGCCTCAAAATGGTGTTTAAGGTGGAGTTTTCTTCTTC
TACCTCACAATCTCTTCTTCTACCTCACAATCTCTCGAACCAGTATCTCTCACAGCTCAC
TCTTCTCTGAATCTCTATCTTCGCTCTCCACTCCTCGTGAAGAACACACACATGCACCAG
GGAGAAAGAAACATGACTTTGTCATGAAGCATTTTCTCCATGGTGCATCAGAGTGGCTAC
ATTGTTTCTGTGCCCAACCGGCTGCTTTTTCTCATTAAATTACAAGACTTTAAATAGCGG
CACACACGTACTACTACTACTGATCTCCACTCCACTAGCCGGCAGCTTAGGCCACGAGTA
ACAACCCATTGGCAACGCCCCACGATTCGGCCGTCACCCTCCTTCTGAGCTGAATACTCG
GTCCACATCTGAGCCTATCTAACAGCTATGGAGCTTGGTCAAGCAACTATGCATGCAACA
TCTGATAGATGCCCGCACATGCACCCTCTCTATCTTAACCAGGAATATCTCAACTAACTA
AACACACTTAGCTTGCATATGCACACGTGATCACAACTCCACGTGCTCACATTGCCGCAG
CCTCACGTCTCAAACTCGACTACATGTATGACTCACAAATTCTAATAATCAAAACTTAGC
ACTAATAACAAGATTAGTTTCGACATTCACCTCCCTAATCTTGTTAATTTATTTCTCTCT
TGAAGCCCATGATCGTCAATGTTGTCGGTGTAACACAGAGACGGTCGCCAATGCCATCTT
GTCACGCCGATTGTCGTCATTGCCGCTTGCTTCAATGAGAGCCACACCTCCTACACCTTC
ACCGCGAGCGTGCCACCGCGATACACTCGTTGTCTCATATTCGCCATCGATGCCGCAATT
CGCCGATGACTCACCTCCATTTTCGTCACCGGTGCCGCAACTCGCCGATGACTCGCCTCC
ATGGTCGCCACCGGTGCCACAACTCGCCGGTGACTAAGCTCCATGTTCGCCACCGGTGCC
ACAACTCGCCAGTGACTCACCTTCATGTTGCCGACGATGACGCACCTTGTCGACGACTCG
CACATGAAACTCCTTATGGCAATGGCCTCCGCTCCATGGCCATCACCTCCTCGCCACCGC
TGACCCAACCTATCGCGCAGCCTGACCACAT