Contig Data
morexGenes
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Map Locations of contig_59785 (4720 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_59785

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71418 3 1693 bp MLOC_71418.2 Available Available LOC_Os02g46780.1, FRAME:-1, EVALUE:3e-115, 13102.m05258 protein MYB family transcription factor, putative, expressed
MLOC_71417 2 715 bp AK374805 Not available Available None





CDS Structure of MLOC_71418






CDS Structure of MLOC_71417






Contig Sequence (4720 bp)

>contig_59785 4720 assembly3_WGSMorex_rbca.fasta
TGCCGGGGGCACGAACTACGAGAGATTCGCCCGTCGTCACACCCCTACCGACATACCTAT
CCGATCTAGGTTAAGCGCGGTGCTCATGGGAAGCTCCACCCACGCCTAACCCTTTTTGTC
CATCATCGCCGTCGCCACCACACCGATGGAGAACGGTGCGGGCTCATCCGGCTCCGGGCA
AGGTAACTACATGGGTTTGTACCGGATCAATCTATGCCTAGTTGATCCACGTTCTATCAC
TACTCCCTCTGTCTCAAAATAAATGTCTTAAGCTTAGTACAACTTTGTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTGGGACAGAGGGAGTATATGATACTGCTGGCCATGTCCG
GTGAATTTATCTGAGGTGTCCTAAGCTAACTAAGTAACGGGAAATGTCAAAACCACACAG
TATCCTGAATAAATTCAACACATTCTGTCAATCTCACCACAAGAATGTCTCCAAAACAAT
GTTTCAGCCTAAGAAACACAAACAAAAACTTGCCATTTCCAGTGATTTCTGCTGTAAACG
GCTAATTAATTAAAATAACCTAAGCAACATGCTATTGCTAGAGAACAGTACGAATGCTCC
AACCAATTCCACCCCCGCGCACGCAGCCCAACCGTCCTAGGTTTGGAATCAACTCAGAAC
GTAAGTACACATCTCCCCGTGGGTACTAACTGTTAGTTTTTGAAGGAAAACGGAAAGGGG
AGATGACCCAAACATGCTGACCTTGTGATGTTCATGAAGCCATAGCTACCCAATAATCTG
CCCACTTGGAAGTACGCGGGGTTGGTCATCAGCGCCGCCGAAATCGGCCGTAGAGATCGT
CGGCAAGGCCTCCGGCGCCACCTTCCGGGATCCGAAGAGACTAGTAAGAGCGAGGGAAGA
GCCTTCAGCATCGTGATCGACGGAGTTCGTCGCCACTGCGCTGCGCACAAGCCTGAGACT
GACTGGTGTTTCTTGGGGATAGACAGCTCAAGCCTCCCAGCCGCAGAAACGGAAAAGCTA
CTTTTTTTTAGACAAAGAAACGGAAAAGCTACTGTGAGGGGTGTATCCCTGATAACGGGC
CGCAAGGATTGCCTCTCACACCATCATCGGCCTATTACCAGTTTCTTTGCCCTTTTTATT
TTGCGTGTTAGTTTTCGCCTTTCTCTTTATCTGGATTTATTTTTATTTTTTTATTTTATT
TTATATTAATATTTAGTTTTTTTTTATTTTTCATCATTATTTTTATACTTTTATTTTAAT
GTTAAATATTTTTCACGTTTTCTTTTTTTCTTTTCTTTTGCCATGGATGCATGCAATTTT
CTCATACACACTTTTTTTTCAAAGTCATGAACATCTATTTGAAAATACATGAGCATCTGT
TCTGGAAGTACACAAACATTTCTATTCTGCGAATGGCCAATCTTATTTGGGCCATCGTAC
ATAACATTTATGTGGCAAATCATCGACGCCATGTCAACACAAGTCTAAGAAATTGATCAT
GGCCAACAAAAACAAGAGACGATATTAAAAGGAAAATTATTTATTTAAATTGGATCGACA
ATATTTTTGAATAGAAAATCAATGTAAAGATGAAGACTCTAAGAGAAAGAAGTTGCTAAT
TGGATAGATGAGCAGGCAAGTCCAATATGGACCATGCACCACACCACCCCTCCTAGTCCA
TGGATATTTTACCCACCTTAGAGCATCTATAGCCATACTTTGTAAATATGATACCTTAAA
CGTTCATGGACACGTCCGATCATTGACCGGACGTCTTAGTTTTAACCCTTATTTGTCCTT
CCGTGCAGCCATATTTTGTACAAATCCAACAACCCAAACATCAATCGTTTAACACCGTGC
AACCCCCCGAGTCCGAGCGAACCATTGGATGAGTAACCCTTTCCGAGTTGTTAGCGATTC
CTATGCGCAACATCGCCGCATCACCAAAGTTGTTTCCACCCAAATTGACAAAGTGTTTTA
TCATCGAAAGATCGAGACACCAACTGAATCGGATTGTCGGGTGGATCTCAAAAGAAGAAG
AAACACCAACGTGAACAATGGCTAATAAGCCATATGATGTTTCTGAAAAGGAATGTAAGC
CCTTAAAATTTAGAACGCATCACCATCTAAATATGGCCCCATTCCCATGCTCCCATTTTC
ACTGCTTAGGTGACCAACTTCTCTATCACCAAATTTCATGTGGTTTTGCTCACCCGAAGC
AACATGCAATCAAATCTAAAGAAAGAAAATAAGGAAATAAAAGCAAGCTAAAGGAGAAGA
AAAGGTTACATCGCATTAGCAAAAGCAAATTGCTTTAGAATGCATAATCAAAGCCTGGTG
ATGATTTCTTCAAAAGGCACGCATGATGGTGGTAGTAGTGGTGGGCCATCGGATGATCCA
GCTCTTACGTCACGATGACGCCGTGCAAGTATATACGCACGGCACGTATTAATCCCAGTT
TCTTGTATTACGAACCAGTACAAAATCAACCAAATGACGTGCATATGTACGCATATTTGC
ATAGCACTTCTCACTGGCTCTTGATCACTGATCAGTGGAGTGCTGTCGCATACATACATA
CATGCCATAGTAGAAGTACAGTTTTGGTTAAAAAAAAAACTGTTAGATAGTAGAGGTACT
CGTGCTACTTGGCCTTGTATTTGACCTGACTTTCATTCCTTCAATTTGTATGTGCATTCT
AAACGACCAGCCCGTTTCACTTTCAGTTTTACTCCAACAATGAAATCAAATGAGCAACCC
AAACGTTTGGTTGAAAACTTCTCCAAGTTGAAATGCTTGATCTCGCGCGTCCGATGGGAT
CACCGTGGATCTTGGCCTTCTATTCAGAACTGGACGCCTGATGATGATCCGATCTGGACT
GCGGGTAGGAGGAGGGTCCCATCGCCACGTCCCCCTCCGTTTCGTAGAGTTGGCCCGGGT
AGCCTATTTGGTCGTGTGGGCCCACCTGGGGCTGGGATTCCCCCGCGGGCCCCCACAGGC
CGAGCTCCTTCTCCAAATCCTCCAACCACCAATCTGTTCCCTCCTCCTCCGGGCTGGCCT
TGGTCGTACTCCTACATGGCACTGTTGCATCGCCTTGTTGTTGTTGTAGGCGCGCGGTGT
CGTCGTCGATGATGCTCCAGATGTCGGCGTCCATGTCGATGTAGTCCGGCAGCTCGAGCA
GCTCCTCCGCTCCCCCGCCGCACGTCGTCGGGGAGGAGGACGAGCAGGAAGACGTCGGCA
TTGGCGCCGCAGTCGCGAGCGCCTCCGTGGGCGCGGCGTCGGCCAGCATGTCCAGGATGT
CCATGACTGGCTCGAGCTCCAGCTCCAGCTCGAGCGGGGATGGCAAGTCCGTCGTGTCGG
GCTCGTTGCTCGTGCCGCACTGCTCGCCGGCGCCGCCTCCATTGGATCCCTCGCTGGTCG
TCATCGACGAGGACGCCGAAGACAGCGAAGGGACGGGCGTGTCGGGGTCTCCGTCGGCCG
CCTCGCCCTTGCTCTGGCCAACGCCTGGGCCTGGCTTCTGCTCCGAGGCCTTCTTCTTCA
GGTGCGTGTTCCAGACGTTCTTGATCTCGTTGTCCGTCCTCCCGGGCAGGCACGCCGCGA
TCTTGGACCACCTGGACAACAGACAACAAAATCCGATCAGAACTCGAAACCAATCGATCG
ATCGATCAGCCCCCCTAGCCGAATGCATGCAGATCAAGCTCACTTGTTGCCGAGCAAGCC
GTGCAGCTTGATGACGGTGGCCTCCTCGTCGGCGGTGAAGTTGCCGCGCCTGAGGTCGGG
GCGCAGGTAGTTGATCCACCGGAGCCGGCAGCTCTTCCCGCAGCGCAGCAGGCCCGCCTG
CCTCGGCAGGGCGCGCCAGTTGGCGTGGCCGTGCTTCTGGATGTAGGCGATGAGGCGCAT
GTCCTCCTGCGGCGTCCATGAGCCCCTGTTGAGCCCGACCTTGGCGCAGCACGGTGCCCT
GCCCCGCCCCATATCGGCCGCCCGAGACCACTCTGCTGTCTGCTCGCTCGTTCTAGCTCG
ATTTGGCCGAGTCCAGGAGGCGGTGGGAAGCATGGATCGGGGGCGGGCGCGGCCGGTATA
TATGTGCGGTGCAACTACAACTCGTGGCAGTGGCAGGGCGACAGGTGACAGGCCCAGGAG
CTGGGAGGCCCTACGTACGTCTATCCTCCTACCTCCGAGACTATTGCGTTTACCTACCAA
GTACCAAACCCCTGTCCCAGGAGAGCAAAATGTCCCTCCCTCCCTCCGCCTCCTGGGGCC
GGCCGCCCATCCGTTCGTGGCCCGGGTTTCCTCTGGGATCCATGATGCGATGCAGGGTCT
ACCCCTCGCTGCTCTCTTGTTAATCAGGATGTGCACCCGGCACTGATGGGCAGCGCATGC
ACCGGGCCAGCTTACACGTACACTTGCTTAAAAATCACTGAATCACGATGATGTTTTCTG
CAGCCCTTTTTCTACCCGGGCCAGAAAAAAGCTTGAGGGCGCTTTTTGGAGTGGTTGTGG
GAAATTAGAAATGATTGCGCTTTTCCGGGATCAAATGAAATGGATCTTGTTTGTTATGAG
CACATCCCTTTGTTATTTTCAATCATATCCGTCGGTTTGCAACTTAACTTAGAACTACCT
CTTTCTCTTAGTGGGAGAGAGTTACTCCTATATCTTTGTGTCCGTTAATTAATCTGTTCA
GGACCTAATCAAACAAGGGGGTTGCTACACATCCACCGGC