Map Locations of contig_5978 (9319 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_5978

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71412 2 1504 bp AK355147 Available Available None





CDS Structure of MLOC_71412






Contig Sequence (9319 bp)

>contig_5978 9319 assembly3_WGSMorex_rbca.fasta
CCCATCAGAACCTTTGTGATCCACTGCATGCCCCCCCCCCCCTTTTTACTTTGCTCGTTC
CCGTGCCATACCGTTGTTCCCCGTGAGATCCAAAGTTGTAGTCCGACATTGACGAAGAAC
CCGAGCACCTCGAGCTTAACTTGCCCCGTTTTGTTGTCCAACATGCTCATGGAGCTTGCA
GGATGCCTCCAAGTCGCTCAACCTGCTCGCCCATGACCCGTTGCGACTTCTCCGTCGAGC
CCGTGCATGCGTAGCCGCAAATCCTCACCGCCGGCTACGATTCAGTCCACCCCTAGCAGC
CCCACAACCTCCGATCGATGTGTGCCATCTCTGACTACCCAGCACGCGGCGCCATCACCC
ATTTGGTCGCCGGAGGAGGTGGCTCGAGGCCCTCCGCCGTGATTTGTGCTCGCGGGGGTC
TTAACCTTAAGTTTGCTGATGTGACAAGGATTAGCTTAGGCTAATCTCTGCTTAGTTTAA
GCCTTGAGTCTATGACGGTGGGGTCCATCTCTTTAATTAAAACTGTTTTATTTTCTGTTG
TGTGAGAGAGGGAGAGTTTCCATGGTGGGGACCACTTCTAAGAGAGAGCGGTTTTTTATT
TTTCTAAAGGGTAGGTCCCACATGTCAGCGTCATATGCACACAAGGGCAACTACAGAAAA
CGTCTAGTTGACGGTCAAATCCCTTTGATCGGACGAAAACGACACGGAGGGGTATTTTCA
TAAGGACACCACAAGAAAAGGGGTATAGTTGAGCATCGTTTTTATTTAGGGATAAAGCTG
AGGTCAGAACAAAGTCTTTCCTACTTATAAATATTGGAGTTGGTGGTGAGTTCACATGTG
GGACCAACAATCTTCATCGATAAACAAATGCACCTCTACCCATATTGAGAATAGCAACCT
TCCATGAACATAACTAAACAAATGTATTTGTGCTCACATGTGGGACGAAACACAAATAAA
CAATACACTACTATTCATGTGAGACTAACACTTGGGACACAAATAACAAATGCAGAAATG
CGACTCCAACTCAATATAGTGCTCTTGTTTTTCTTTTCTTTTTTTCCTAGCCAAGTTATT
TCAGTTATATATCACAGAACAAGAGAGTGAACAGATTGTAATTAGAAAACGATGATAGAC
CTTATCCTCCTACCGGATCCACGACCTTATGCAGTACCATTGTCTATTCTCATATGTTTC
AACATTCGAAATGTTGTGTTTGTAAAGGATCATGGTCATTTCAGATTCTTCAATGCCTGT
GATTTTTTTGTGATATTTTTGATCTTTCTAATAGTGAACTGCGAGCAAATTCCGCATGAT
GTCATCGTATTTTAACAATTTTCTAAATGAGTGACCCAACTCCTCGAACTTTATAGTTTG
GTAGCAACGTACGGACATTGTGTTAGTTAAATGAAAAAATAAAAATGTTCTTATAAAATA
TTTACCGTAATATCTTGCCTGCATGTTTGGCGAACTGAAACACCCAAGGTTTGGTAATGT
AAATAGTATGAGACCTTCCTATTAGCGTATATCTTGCCTGCATGTTTGGCGAACTGAAAC
ATCCAAGGTTTGATACTGTAGCTAAGAACAGATCCAAACGTTTCTTTCCAGTCAAAAGAT
TCAACTGCCGGGAGAATTGAAATTTGAGATGAAAAGAGGAGTAAAAATAATATTCCTTCC
GATCGAAGTACTAGCTTCTAGTTGGTAATTTGGCCCTCTTCTCCTATAATTTTGGCCTTC
TTCTGACATTAACTTCATAAAAATAACTCCATGATGGAGCCAAACATTTCTTTCCAGTCA
AAATTTTCAACCACTCAAAATCCGCCAATAACATAACTGAAACAATTCTGTCGTGGATCT
GCAAGCAGCATTAGTCCCGCGTCGCAGCTTATCAACGGTGATCAAATTGCAAAGAACCCT
GCAGATAATCGGTACTGGTCCAAAACCACGCAGGTTCAGAAGTCCATGGGTAAACTGACA
GTGAAAACATGTGGACAGAGACGTACTCTTCCTCTAACTTGATGCTTCAGATTGTAAATA
AAACAATATCAAGTGTGATCATCATTGCAACAAATTAGAAAAAAGGGCGGACAAGGATGA
AGGAGCCTGATTAGCACAATGGCCATGAATAACAGAAACAGGCACCTCGCAAAAACAAAA
ATGGAATAACAGAAACAGGCACCTCGCAAAAACAAAAATGGAATAACAGAAACAGACCGA
CAAGTAACAGCAGCTCCTCGGATGACAGAACTTGTGTCGGATAAGAACTTGTTAGATCCA
TATGAACAAATCTGCGAGGACATCAAACTAAAATCCATGAGGTCTGACACACAAATTAGC
AGTCTTTGTTGCACCATCTCATAAGACAAAGCCACTATAGAAAAAGAACCAGAGTACCTT
CATTCTCACGACATCGTACCCTCGGCCAAGAGCCCAAGACGGTGATGATGAAGACCATAG
AAATCATATAGTAGTAAAACTTCTGTATACGTATAAGAATAAGAAGAACCAGAGTGGATA
GACTAAGTTGGTGTTTTTTTCTTTTTTGAGAAAAGACCTAAGCAACATGTGTATGGGCTT
GGCGTTTATTTCTACGTGGGCCTGATCTTTGCAGTCTTGCTTTTAGTTACAGGTGTCCTG
GGGTCGCGACTGCGCTAGCCCATTTGGCGATCGGGACTATAGCAACTGGAGCAATTAGCT
TCCTGGTTTTCTAGCATTTTTTACTAGTTATCAGCGTATTTTTCATTCGTTTTTACAGAA
AACCAGAAAATTATATTTAATTTCAGAACCACACAATTTTTTGAATGGTGAACAGGCATT
TTCTAAGAAACATGAGCATTTTTTGAATTTCTTGGACATCAAAAATTGAATATTTCTTTA
AAAAATAATAGTAGAAAAATGATTATTAATGAAATTTATGAATAGCTTATGATTCCTAAA
ACATATTTATAAAATAGGAACACTTTTATAAAACTAAAAACTAAATAAAAAGAGAAGAAG
AAAAATTAGTCTAACCATTACAAAAACTTCCCAAAACTGAAAAAGCCAGACCATAAACCT
TCCAAACCAGGGAGAAAATCAACACGGACTGGGCCGGCCCAGTCGCACGCCATAGTGCTA
GAGGTCAACATTTTACCGCAATAAAGCGTCAAATAGTCATTACACTAGAGTCTAATATAC
CAAGTATTGATTGAGGATAGGCTCGTTCTATTACATTGTGGCAATCTAGCTAAGATTTTA
TGCATAAAGGAGATTCAACACTTATAGCAATGGTTATAGGCTAAATCATACGCAACGCAC
ACACCCCGCCCTTTAATAGATAATAAGTGGGCTTCCCATCTAAGGAGTATCGCCAGTAGA
AGCTCCCCCATAACCCACCCTTGCAAAGGCCATTCTCTGATCTTTTCTTGTGTTGACAAG
TGACGCACTACATGCGTGTCATTTGTCACAACCTAAGAGTTTTTTGTACTTTTTTATATT
TTGTCTTTCGAACCGTGTGTTCAAATCATGAATTATTTTTATCGTTGGATTTCTCGTATC
GAGATTAAAACTAGATCTCATGTTTATGTGTTTTGACGAACTTTTTTCCAGAAAAAACCA
GCAAACCCAAAATTGGAAAATAAAAAAATGGAAGTCATTTTTTAAAAAAGATCGGAAAAA
TTGGACCCAAAAAAAGTAACACAAAAGCACAATTGTACTTTTCACTTTTTTAAAAAGCAA
AAAGTTGTGCCTTTCTTTTTTCAGGAAGGACAATTTTAGTTTTAGTGGAACAACTGACTA
TACTTTTCCTTTGGAGAGGCACACATGTACCTCTAGTGAAAGCACATTGTTTACTTCTCC
TTTTTTCAAGGAAGCACAAATGTGTTTTTCCCTTTCGGGAAGCACAATTGGCTTCTCGTG
TAAAGGTGGTTGTGTTTCTGCGAAAGCACAATTGTGCCTTTTCCTTTTTTAAAAGCATAA
ATATGCCCCAAAAAACGCATGCAGAAAGAAAAAAAATTCCAAGGGTGCACCAACGCATGA
CATGTGGTGGCACATGGGTGCACCACTTGGCGCGTCCGAGGGGCTAAGAATACCATTACA
TTTGCACCCAAAGGAATATCCGTCGGATAGTCGCTCCCACAATTTTGGGTATCTTTTGGC
CCAACTTCTTTCTTTTGCCTTTTTACAAGGTTCTTGGTTTTCCACATGTTTTTATCTCTT
TTTTATTATTGGAAAATGAAAATGTTCATAATTTGATTTTTAAAAATCCATTAAAATTCT
CAAAGTCGCAACTTTGTTATATTTTCAAATTCATAAACATTTTTTAAAATCCATAACGAT
TTTTCATTTGACATTATTTGTTCAAAGATATCATAAAAATGATCTTTTTTCCTGTGATAG
CATACCAATAGAAGAAAATAAATCAAAAAATAAAAGCAGCAAAGAGTCGGCCTAACTAGC
CGAGAGAAGCGAGTGGGGCGTGACTTTGTACCGCAGCTCACTGGCATGTGTTCGAGCGCG
AACCCGTTAACTGTTTTTTTAAACAATCTCGGAAAGCTTTATTTAACTGGACCAATATTT
TACAGGAATAAATGCAAGATCACAGGGATTGCCTAACCACATCCAACCCAATAACTAAGG
CGCTGAGGAGGAGCTCTCGCTTACACTGGGTCTTGCTGCACTCGTCGAGAAACTAATGAA
AATTCTGCAGAAGAAAATCAGCACACGAACATACTATTTATATACCATGCTGTGAATTTT
TAATTCAAAAATTTAAACCTATCTTGATAAAATAAAAGAAAAATTATTGACAAATATAAG
TAGCTAATCAAATTCAGGTTGAAAATTCTATCTATTGTCACAATTGATATTGATTTTATC
CTTTTCTTCTTTCTGAAAACCTGTGATTTGAATTTTGATTTAATTTTTTTTGCACTAGAG
TGTAGTCTTTATTTATATTCATTCTTCTTTTTAAATTATTTTTAATTTCCTAATTATGAA
ATACAGAGGTCCAATGCAGCAGTGTGGACCTCCTCATTCAACAGACAACATCATCTATCA
GGCTCGTTTTAAGCTTCAAGCCCATTTTAAGGTTCCAAAATCCCCTAGAAAAATCTCCAC
ACCCCAAGAACCGGTGAAATACATGCAGTTATAAGGATCAAGCTAAGCCATCCACCATCA
GGAGCGCAGCTAGCATTGGGATCAATTGACCCCAATGAAATTAGGTAACACTAGTACTAC
TAAATATTCTTCATACTGAAGAGATATTAGTGTTGAACCCTTATAGTCTATGAAGATGAC
CCCAATTATTATTTTAGCTGGCTTCGCCCCTGTCCACTATGCGGAAGAATGACGAAAAGA
AAACAAGCAGTTTCGGAAGAAGAAAAAAATGAAGGGGAGATAAACTACCAGCTGCAGGAG
CAGGAATGCGCAACAAAGCCAACAGGCAAGAATTGGTGGAAGCATCAACGTACGTACTGG
TTGTAAACATGAGTATAGTTTGTCAAATCACTTTGTATTAAGTGGCCGCAAAAGTTCATT
CACAGGCAAGTGAGCCGCAACTTTCTGGCATAGTTTAAGAAACCACCATACCGGTAATCG
AACCGGTGAGGTTATCATTTCAATTTTTTATCGAGCGGATCGCCCGTTTACCGGTTCTCG
ATTGTTTGGTTTTTTATCGTAAAATAATATATGTCGAGTAATATATGTGTTAATATAATA
TAAAACAATGATTAAATAAAATTATTTTTATATAATAGACAACAAAATAGCATAGCTAAG
TTGCTTATTGGGCCATGGGCAGACCCGGTGTACCTTGTGTGACATGGGATCAAATTCTGC
ATTTCTCAATATATATTAAAACATTTTCCTGGTTTTTCCCGGTTCAATGGCCGGGTTTTT
TCACCGATTTTTTGTGTTCGAATGGTTTTCTCTGGTCCGATTGCAGCACATCTTATTAAC
TTAAAAACCTGTCAAGGCCGCCCGTTCTGGTTTCTTCCGGTTCAACCGCCGGTCTGGTCT
GGTCCGGTTTTTTAAACTAGGCTTTCTTGTTAAATGATTGGGTAACTCATTATGCTAGGC
TGCAAGTAGCATTAGTCATGCGTCACTCATACTAGCGATAATCAAACAAAATAGAAACCC
TAGAGTTAATAAGTTCAGTGCTACCCCAAAACCACCGCAGGTTCTGAAGATGAAGTGCAA
CGGTGAAAACATGTGGTCATCATCGCAATAACCTAGGAAGGAGTAGCCAAGGCCACAATG
GTCACTGAAATTCTGAAAGAGACCAACAAGAAACAGCGGATCGTCAGATGACAGAAACTT
GCATCGGATAAGAACTTTGCAAGCAGAGACAAATTGCAAACCATGATGTCCGAGGAGATT
GTATGGGCAAATGACGAACTCGACACTGTTGGTTATGAATCTTCGATTTACAGACCACTG
ATCAAATGAAAAGGAGGGTCTGAGCTCCTCCACAACTCAAATTATATATAATTGCTAATA
ATTCTTTCTTTCGAAACGGAGGCAAAAGAATCGGTTCATCGACTGTTAAGAAGAAGAAAA
ATAATCAATTAATTTACGAAAAACCGACCAAAACCGATCTGCCAATAATTCTCACTAAGA
TGGAAAACAGATATAGTTTTGTACGATCATACAGTCATCGCACTAGCATCACACTACAGC
AGGGATCATGATAGGATGCTAAGATTTCCTTTTTCTCAGAAAGAAGGCCTGTCATCAAAA
AGACAAGGGGAAATGCCAAAAGCTACCCAAACCTGTCAATTAGTAGTACTCCCTCCGTCC
CGGTGTATAAGTCATTAGCGTAGTTCTAGGTCACCGATTTGAGGAATTAAATATGTGTTA
TATGTCATGAAAAGTATATCACTAGATTTTTACACGGATGTAGTTTCTAAATATATATTT
TTTATTACATATGATACATATTTAGATAGTTAAATTGTTGACCTAGAACTACGCAAATGA
CTTATACACCGGGACGGAGCTAGTAGTTTACTGGCTCAAGATAAGATCCAGTACACTCAA
TAACATGTAGGGGGGCGTCCTTTGAGCCAATAACAAAGATAGCAGTACAAAAGGTAGTAC
CAGGCTCACTAAATATGCAGGTGTACGCGTAACATGGTGGACCGACCGAACAATATCACC
GAATGCATCTTTCACACAACGATCCACCGATTAAACAACAGCCCGCCACACTGCAACTTC
TTCATTACGGGTAATTTCAGACCAAGGAGAGCTGGGAGCGTCCTGAGCCGCTGAACATGG
CGTATTTCATTTCAAATAAGCTGAGAGAATATTGTTGTCGGCACATGGCCAGCTATGAGG
CCATCTGCTCAACCTTGGGAGACTCTATGTTAATGGCAGGACATGGTAATATTTCTCAGC
GACATATATTACTATCAGGATTCAAGCATCCTTTCCTACTACAGCCTAGTCGTAGCACTA
GCACAGACATAAAGGTGAACTCCAGTCGTTGGCAGCAACTGTGAACTTGTGTAATGCAAA
GCATCCAGCAGTTATGAATTTATAATGCAGGACTAACGATCACCCATTAGAATCAAACGG
CAAAGAGAAGTGGAAATAGCACCGCATGGGTACACCTTGGTCCAACAAGTTGACAATGGT
TCAAACTCATTATCAAACATGGCACATGAGCTAAATTCGAGCCATTTTCATCTTGTTGGA
CCAAAGTGGTGCTACTCAAACGAAAACGAATTCGCACAAGTAACTGGGTACATTGTTATC
CACTAGTTCGATGATAAGTAGGGTAAAAAGGACCGCATATACATAAACAAGACATCAGCA
AGCAGTAAAATAAGGTATAGATTTTATCAGCTGAAGCATAGTGGCAGCAAAGCTGAAGCA
TACCTGTCTGTCACCTAAGAGAAACTACATACAGTAGAGTAAATATCAGCTGAACCACAG
TGGCAGCAAGGCTTCACATAAGGAGGTATACATTTGATTGGGAAGAACTTATCAAGACAA
ATCAGTCTGAAATTACACTTGACTAGCTGTCGTTGTGAAGCAGCCAAAAACACAAGCAAC
CTCTCCTATACGGTTATACCCAATGGAGGATCCAAAATCTTAATGTACACTTGCAGCTCC
AATTCTCTATCTCGACTCACCTATCCATCATCTCTAATCACAATAAATAACTACTAACCC
ACCTCGCAGAGCACATTTTACAGTGAGCAAACAAGCAGGTCCAAAAAGAAAAGCATAACG
TCGAGCACGTTGCCCGCGCCCTAGGAAGCTGGCGCCTAATGGTAGAAGACGACGGGCGGG
ACAGCCAAGCCGGTGTCCTTGAGGAAGGGGACTACCTGCGGGCGCTCGGCGAGGTCGCGG
TAGAAGGCGTACTCCGCCTCGTAGTCGTGGAGGTCGAGCTCGTTCTTCTGGTTGCTGTGG
TAATGGTGCTTGGCGTCTGCCACCTTCCCGAAGCCGAACACGCTCACCCTGTCGCACACC
CCCACCGCGACCATGATGGCCTGCATCCCGGACGAGTAGTGGAACAGCGCCGCGTCGTGC
GCGCTGTTCCACTCCTCGACGGCGCGGCCCGTCTCGGCGACGAAGCGGCGGAGCGAGTAG
TACTTGACGATGCGCGCGCAGAGGACGTCGAGGCGCGGGTCGGTGACGGAGATGGGTGCG
TCGTGGGTGGCGAGGGAGGAGGCGTTGCAGGCGGCGACGTCGAGGAAGTGCGCGGCCTGG
CAGATGTAGAGGAGGACGGGGACGCCGCTGCCGTAGGGGTGGCAGAAGCAGCCGGGGCGG
CGCGCGCAGAGGTGGAGTATGTTGCTGTTGATGAAGGAGAGGTTGGTCTTGGCGCCGACG
TGCGCGGTGTAGCCGACGATGCGGGCGTTGTTGAGGCGGAAGACGGCGTGGTGGGAGTCG
ATGAGGGCGCCGTGGGCGTGGCGGAGGAGGATGCCGCTGTTGCCGACGACGGCGCAGGAG
GGGATGCGGGCGGGGAGGGCGAGCACGGCGGGGAGGTCGCGGAGCACGGCGGGGTCGTAG
CGGCGGAGGCGGTGCCAGGAGCGGAGCGCGCGGCGGAGGGAGGGGTCGAGGAGGATCTCC
TCGCGCGGGAGCGGGTGGAGCAGGGAGTCGGCGTGGTCGTGGTCGTGGCCGCGGCGGTGG
ACGGGGAACTGGTGGTGGCGGAGGTGGAGCGGGTGGAGCCTGTCGCGGCGCCAGGCGCGG
GCTCGGGCGCGGCCGGAGGCCGGGAGGCGGCCCTCGAGGAGGTCGTCGAACACGCGGCGC
AGCGGGGGCCCGGCCCCGGCCAAGCATCCCTACCTTTGATGACATCAACCAGCCTGACAA
ATAAGCTTGCTAGCGCACC