Contig Data
morexGenes
Links



Map Locations of contig_59756 (5890 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_59756

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71399 2 926 bp MLOC_71399.2 Available Available LOC_Os12g08700.1, FRAME:+2, EVALUE:4e-19, 13112.m00920 protein expressed protein
MLOC_71398 2 221 bp AK369753 Not available Available None





CDS Structure of MLOC_71399






CDS Structure of MLOC_71398






Contig Sequence (5890 bp)

>contig_59756 5890 assembly3_WGSMorex_rbca.fasta
GAGAAGGAGAGGCGAGAGAGGAGAGGAAGGTTCCGAGAGATGGCAGTCCCGTAGCCGGGT
GGAGGCGAGGCTGCTGGCCGGTTCCAGGAGCACAGGGCCCATGACTGGCGGACGTCACCG
GAGGCGCCGTGCGGTACATCATCAAGGACCTCGGCATGGCGCTGGAGGTCGGCGACGACC
AGGAGGAGGAGGCCAATGTGCTGTCAGGGTCGGCGCTGTACCGACAGATGTTCTCGGCCA
TGGCGGAGACCGGCGACGGCGAGCTGTGCCTGCAGGGACTCATCACCGTCATCGAGCGCC
TGAACGACATCCACAAGTAAGGCAGGACATGTGTTCATCAAAATGCCGCAACCGGATATG
GACCCATGGTCATGTATTATTAGTTTTTTCGTGGACAAAAATTCGATCTCTATGTCATGT
TTTTAACAAAAGATTTGTGGATGCTATCATCAATCGTAATATTATCATTTTTTTGCTTAT
TTGTGGATGCTATTCTTGTTTTCTTGTTGATGTTAACAACGGTATTTCAGTTCTTTTTAC
CAAGTGCGGTACTCTGATAAGTTAATAAATTGTTCTATGCTTGTAATCAAGGTGTTGACA
AGGTAATAAATTGCTTCTTTGGACATCATATGATGTTCATACAAATTTGGCGGCTTTGAC
GATTGATGTAGAGAATGTTAAGTGGAATATCAACCAGATATTGTTGTAGTAGTTGTAATG
CGGATATGTTGAAAAATCTGTAGTAAAACTCATATCCAGGGCACTACTTTATTTGCTCAG
TTCACTTACAGAAGCATGATTTATCATTTTCCCTTTTTTAGCTTGCCATATAAGAAGTTA
TGCATCGCACTACATGATCTAAACAATCAATTATGCTTATCATATCTGTTGAAAGAGAAA
GATAACTTAGAACAGAGAAGTGATGTTCATTAGTTTGCTTTGAACTTTTTACTCAGTTGC
CTTGCGACTTAATGTAATTATTATGACATGNCAGATTATTGATCTGGCAACACTAACCGG
TGCATGTCTTGTTGCACTTGGGCCTAGCATTGCTAGTAAGCTCAAACACATATTTTCCTC
TTAGCCAAGTTCAATTTTGTGTGCTTCTAAGATGGAAATAGTGGGGTACTCTGAAGTCAT
GTATACTAATGAACATGTCTCTTCAGAAATCCTCACACCAAGTGATGAACTAGCCCAGGA
AGTCACTGCTGCATCTGAGTTATCGGGGGAGAAGTTCTGAAGATTGCCCATGGAGGAAAG
CTACTGGGAGCAGATGAAGTCTGGTGCGGCATACATGGTCAACACGGGCGGTCGACAACG
GTTCCATCACAGCTGCCCTGCTCCTGAAACAGGTATAGCATCTCTCTAGAATGACCAAAG
CATCCACATGTGTTCGTTGAAAAAGGTCGCATCATACTTGTACTAGGTTGAATTTTCCTC
CGGACGGTTCCATCACAGCTGTCCTGCTCCGGAAACAGGTATAGCATCTCTCTAGAATGA
TCAAAGCATCCACATGTGTTTGTTGAAAAAAAAAGGTCGCATCATACTTGTACTAGGTTG
AATTTTCCTCCGGCAAAGCTGACGAACTCTAATGTGCTTGCATTGCAGTTTGTCGATGAG
AAGGTTCAGTGGATGCACATCGACAAGGTTCAGTGGATGCACATCGACATGGCAGGCCCG
GTGTGGAACGACACCGCCACTGGCTTTGGCGTGTCCACCCTGGTGAAGTGGGTCCTCAAG
AACTCATCATCATCCTGAAGGTGAAGTGGGTCCTCAAGAACTCATCATCATGAATGAACT
CCCCCATAACAACGTCAGTGAATGAATGGTTTCATTACCAGTGAATGAATGGTTTTTATT
TGCTTTTGGCTAACGTTTTATTTGCTTTTGGCTAACGTATGGAGTGTGAAGCGATAGAAT
AAGGAAGGGTTTCATGGGGAAAAATAAAGCAGCATGTTGTTGAACACTTTCCTTATCAGA
TTAAACGACGTTTCATTTCGTCGTTTCCATATTGTGTCCTATCAGATTAAACGACGTTTC
ATTTCGTCGTTTCCATATTGTGTCCGTGACTGCTGTCTGGTGAACATTTTTGCTATAATT
AGTTTAACCTTATGTTAAAATTGATTATAAAAATGATGCACAATTGCATATGAAAAGTTG
TGTCTTTTTTTCACCCGGTGCAACGCACGGGCATTTGTACTAGTCATCAATAAAGAACAC
TGTTTTGATTACAACTCGGTCAAGAAATCGCTGTGCCTGGATCTCTAAAATCTTCGTAGT
TCTACATTACATGTCTTTCCGAAGCTGTATAAAAATGCCTTCACCACTTCTATCAAAAAA
TTGTAAGAATATTATGAAAAAAAAACTATCAATAGGTGGTGTTGAGCAAATTAGAAGGGC
GCGGTAGCAACATCTCGTTCTGCGGCGGTGCGGCCATACTGGCGGTGGCAGCAAATGCTA
TCATCGTCAAGAAACGCGTAGGGATTGAACATGTCATAATCTTCGTCGCCCTGGTCGTCC
TCCTCGTCGGAGTCGGTCATGGAGTCCTTCCTGACGCCCAGCACCGGCTTGAGACCCTGC
AGCACGCAGCAAGTTCCATAAATATCAGCTGGTTCGTCCATCGTCATCACAAAACTGAGA
GACAGAAGCTAGCCGATCGACCATGAACGATCTGCTGGATCGTCCAGATTGTAAGTAAAG
CTGCTCGTTACCTCGGTGAAGATCCGGACGGCGTCCTCCGACGAGTGCGTTCTCAGGACA
TACAGCGCCGCCTCCTGCAGAAGTGGATACGTACGTCTTAGAGAACCGTCTTAAGAGAAG
GTTGAGAAAGATCGATGAGAGCTAGGCTCGGTGGCGGTGCCTCACCCTGGCGTACTTGAG
CTCGTGGAGGGAGAGCGCCTTGGGCTCCCACTCCATGGACGCCATGCTCCCCGCGGCGCC
CGCGTGGGGCCGCATCGATCTCAGCTTCGTCGGACGTGCTGGGGGATGACCGGAATGTAT
CACGTACGAAACGTGTAACGCGCAGGCCGGGCAAAAATTGCAGATGAGAAATGCGTGTGT
GTGTGTGTGTGTCTACTGCTTCCGTGCAGCAGATAACAACGGAGTTCCTGTGTCGTTGCC
TATTTATAGCACGACGAGGCGTCGGTCGGACGAAGAGAAAGTAGGCACGAACTCCACGCG
TGTCGACCGGCGCAAGCGCGCACGTCGTGGAAGCGTCGTGACACGCGGGGACGGAGAGCC
GTCACCGGGTCGCGGTCGTCCACCCCGCATGGCGCCAGTGCATGGCGAGGCGGCCGGCAT
GGGCCAGTGGCTGCCCGGCGCGTGGCGTCCGCTCGGGGTTACCATCGCGTGTAGCGTGAC
GTGTGATCCTGACGCCGCCGACGCGCGCGCGCGCGGGGCTGGGATGCGCCCGTTGCTTCG
CGATGCTGTGCACTTTTGTGTTTGTGGAGCCTTTCCACCGGACGAATACTTCCTGATGTG
ACCGGGGCCGGTCTGCTTCTACCGGTGGTTTCCCACGGTATTTTCGCTGCATATATACGT
ACCGAGCGATATAGACGGACACCGCGTGATTGTTTTTTTTTTGAGCAGGACACGCGATTA
TCGACAGGACAGGAAGTAGACGAGATCGTCTTCTTTCTCTCCTTTTTATCTGACAGCGAC
GAGGTACATGGCCACCTTCGAAAAATAGCTGATCAAATCTCCTTTCAAGATACTGTTCAT
ACCATGTTCGTTTCTCTTGTATTCAGGGGCGGCCGGCCTGGGCCAGTGGCCACCCCCATC
GATTTCGAGAGGGGTGTGCTGGCTGTAGAACTTTTGTTAACTCATGATAATTAGTACTGG
ATCATGGAAGTAACTATATTGATATAAGAGCATCTCTAGTAGGTCCCATATAACACCGAT
CTGTAAAACGTGTTTACAGTTCGTGAAAAAACGATTTTATGGACCGGTGCGGACGAGAGC
AGAGTTAGACCCCGTAAAATGAACCTGTAAAAAAGATATTCGCAGAAGATGTTTTTTTAC
GGGTCAACTCGGGCTGCGACGGAACAGACCCCCTAAACTTAAAGTGTAAACCGAATTTTC
GCTTACATTTTCCCCCATATCTTCTTCTTCCTCTCGCCCGTGTCCATGATCAATTAAATT
TGTTCCTAAATACAGGGTCGTCGATCCCTGAATACATCCAGGAGCTAGCTAGCTAGCTTC
CGTCGCCGACGTCGAATCCGGCCAGGACGAGCAGGGTGGCCATTAGGACGGGCGGGGTGG
CGTTCAGGGACGTCCGGAGCGACGTATGGTGGACGTGGACGGCGGACGCGGAAGTTTTTG
TGGTAGTTAGGCTCCCGTCAACTGCTTTCTTTCGATACAGGGCACCGTAGAAGCGGACGC
GAAAACTGTATTTTTGCAGATCGGGAGAAGCTTTTTATCGTGCCCCATAAAAATATGTAC
ATGTCCGACGCATTTGCAGGGTCTGATCAGACAATTTTTTCACACGGACCTGTATTTTAA
CGATTATTTTGCAGGTCATATATAATGCTCCGACCCGCAAAATAATTAGTCAAGCACGAA
GTTGGAAAAAGGCCCAAGCCTAGGAAGCAAACGACGTCGGCCCATTAGATGGATACATAA
CTTTTGTTTTTGGACCGAATGCACCTGCACTACTTGATGATGGATTAGTTGACTACCAGC
AGTCGACTACCTGCACTACTGCATGTGTTCGTTGATTGTCTCCCCTGTGCGCTAGGACAT
CGCAAGCGTCCGGCTGCGATGCGTGTATTCGTCATCTCTCACCCACGTGTGCTAGGGCAT
CGCCAACGTCCGGCGGTGATGGGCGTCGCCTGCGGCCGGTCTATGCGCCAATTTCATGAT
ATCCCTCTATCAGGAGCTTCAAATTGCACCATGAGAACAACACTATACCACTCACGCCGG
ATTTAAGGTAATCATACTACGATTTCATGTCTTGAATATCATGTGTTATTACTATTATTA
GATTTTTATATAAAACTGCTAGATGCAAGATACTGTTTGTTCATCGGTTATAAATTATAC
ATATTGTCTATGTACATAATAGCCCCAATATCACATATATTTATATACAAACTGCCAAAC
AAATATTTTGCGCAAATAGAAATTTCACAACAAACTAGAATCCAAAGTACACAATATGAG
ATTCTGGTTACATGCGTTTTTTTGTGTTAGTTATACATCCAAACTAATAAAAATCTACAT
GTTTTCTAAGTACAAAATATATATTATCTCGTGTTGGTCTTGTATGGTCATTGTATTAAA
AAGTGTATGAAAATCGTCATCTTAGCTCCCCATACTTAAATCCTGGCTCCGCCCCTGTTT
GTGTTGGACAGGACTTTTCAAAGACAAGGATGCGGAAAAGCTTCACGCTGAAACTGAGAT
GATTCGCAATGGGACCATAATGTTGACAAAAGTCTGCAACAACTCAAGAAAGATTGATGC
AGAGCGTTGAGGTCGCCATCTCCGGTCGTGGAGGTCTAAGAGCAACTCTAGCAGACCCCA
CATCCGTCCCCGACCCGCAAAATAACCGCCAAAATGCGGGTCGAGGCGGAAAAGCCTGCC
CGATCAGACCCCGCATCCCGTCCTGGTCCGCAAAAAATTTTAGGGGGCGCGGTAAATTCC
CAACCCCAACCTGGGAAAACGAGGGTTTCCCCCTCGTGGCTGCGGTGCCCTGCATAACAG
AGAAGCAGTTGGCGGGAGAGACATTTCAGCCCGCGCTATTTTCCCCCTCCCTTCCACCGC
CGCCCCGCCTTTGCTTCCGCCCGCTCACCACCGGCGATTCCGGCCATATCTGTAGGCGAG
CCGCTGCACCGCCCCTCCGGATCCGGCGAGAAGAGCCGCCTCCAGCCGCCGCCGCCGCCG
GGGATCGACC