morexGenes - Barley RNA-seq Database

Contig contig_59753
Source Contig contig_59753
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_59753 (6530 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_59753

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71397	1	976 bp	MLOC_71397.1	Available	Available	LOC_Os12g38640.1, FRAME:-2, EVALUE:1e-32, 13112.m03986 protein expressed protein
CDS Structure of MLOC_71397

Contig Sequence (6530 bp)

>contig_59753 6530 assembly3_WGSMorex_rbca.fasta
CAAGAAGTGCCTATGGACAAATCGTACAAATATGAATATATTTTGTGTTTGATATGAAAT
GTCAATTTATAAATAATAGGGAAATTAGACTGCTTATTGGGTTTTCCTATTGCAGACGGT
TTCTCAAACAACACCATGGGCGTTGACCTCAACAAACCCACATAGTTTCTAGAAAGTCGA
CGTGTTGTATTAGTGAAAATTCACAAATGACTTCTGGCCAAAAACTATGTGCATTAGGCC
ACCTATCACAAACATTTTCACATAAAACATGTGTGTTATGGACGACCCTATGCCAAATAG
TTTCTTCTAGGTATCGTGTGTGATGTATTGAATAACGCAATCGACGGAATTATAACTATC
ACGTGTGATGGACACCCCTATCACATACGATGTTATGCAGAAAATTGTGTGTGGTGTACA
ATACGAACGAAAATGTAACTTTGGGATTCACTGTGCGGGATGCTAAGAACATCTCACACT
TCTACAATATGTATGTTTGTGATGGCTCTCCCAATCACACACGATCTCTTTTTGCCTATG
GTATGTGACGAACGAGGCATCGCCGATGATATCTGTGTCGTGTGGGATAGGCCCCCCTAA
CGCCCGCACAGGCAAGGTGATATTTTAAAACTACGTCGCGGAAGGGGGTAAAAACCGTTT
GTATAGGAGCCCTCTGCACTAGTGGATACCCTAAAGAGACAATTGGGTATACCTTCTATA
ACAAATTCGAGGGCAAGATCTTTGTTGTCAAGAATGGATTCTTTCTAGAGAAGGGATTGT
CTCGAAAGAAGTGAGTGGGAGGAAGGTAGAGCTTGATGAGGTTATCTGACCTTCTCTCGA
AAGAAGTGAGTGGGAGGAAGGTAGACCTTGACAAGGTTACCGAATCTTCTCTCGAATTGG
AGAGTAGCACAACACAGAAAGATGCTTTTGTGATGCCTACACCAGATAGAGAGGAAGTTA
ATGACGATGATCATGAAACTTTGAACCCGACTGCTAGTGAACTTCGTGGGTTAACCAAGA
CACATGCTGCCCCTGATTGATGCAGTAATCCTATCATGAATGTCATGTTGTTAGACAATG
ATAAACCTACGAACTATGAGTAAGTGAGATGAGCCTGAATTCCGAAAAATGGCTAGAAGC
CATGGAGTCTGAAATAGGATCCATGTACGAAAACCAAGTATGGACTTTGGTGAACTTAAC
CGGTGACCGAAAGGCCATTGAGAACAACTGGATCTTCAAGAAGAAAACATCTGATGGTAA
TGTCATCGTCTATAAAGCTCGACTTGTCGCAAAAAGTTTTCGGCAAGTTCAAGGGGTTGA
CTATGATGAGACGCTCTCACCCGTAGCGATGCTAAAGTCTGATAGGATCATGTTAGCAAT
TTATGCATTTTACAATTATGAAATCTGGTATATGGACGTCAAAATTGCGTTAATTAATGG
TTACTCTAAGAAAGAATTGTATATGATGCTAATAAGGTATGCGAACTCCAATGATTCATT
TCTGGACTAGTGCGAGCATCCTCAAGAGAGGTGACCAATTTTTTTGGATTTATCCAAGCT
TACGGAGAAGTTTGTATTGACATGAAAGTGAGTGGGAGCTTTGTAGCATTTTTAATACTA
TATGTGGATGGCATATTATTGATTGGAAATGATGTAGAACTTCTTGAAAGCATAAATGGT
TATTTGAACGTGAGTTTTTCAATGAAAGTCCTTTGTGAAGCAGCTTACATATTGAGCATC
AACATCTATAGAGATGGATCAAGACGTTTGATAGGACTTTCACAAAGTACATACCTTGAC
AAGTTTTGAATAATTTGACCCATACTTAGCTTAATTCATGATAATTAGTACTTACAAAAA
CGTCTTATGTTATAGGAGAGAGAGTACAACTTTGAACACTCCATTATTCTTAAAAATTGA
TACTGATATACTCTGTCTCCTTCAGATATACCTGACCATAAGATACACGGTCCGACCCAA
AAAACTCAGACCTGACCCGACCCGATGGTGCCCATTGGCCGGCCTTGGGTCTAGGTTTTA
AGCCCGAAGGTCGGGCCGGGCCTAGGCCCGGGCTTGCCATTTTCCCGATCTAACGAAGAG
GCTCGGCCCTAGGCCCGACGGGCTTTTACGTTGATGGGTCGGGCTTGGGCGTGATTTTTA
GGCCCGGCGCCCGGGCCAGGACGGGCTTGGGCCTTGGTTTTCTGCTTCTGGTTTGCTTAG
GACCGGCCAGCCCGAAGAATGGCGAGATATTCCTTCGTCTATCTTGTTTGGCAAAAAAAT
GAGGTTGGAAAGCTTAGTTAGTCATACTATCGTTACGAGGCCTATGCACACCACAACAGT
TTTCTCTCTCCAAAAAAATAGTCACCTTTTAGCTAATATTGACAAAAAAACCAAAACGAG
AACAAAAGACCAAGACATGTTATTGCAAAGAAAAAAGAACAAATATTTTTCATGAGCCAA
AGATAAGTTGGGTACTTTTTGGTTGTCGTCCAAACATACCCTGCGGTTTCTACCCCACCT
CGGTGTCGCCGGGGAGCTCGCGGCTTTGTTCTCTCTCTGGTCAGTCCGGTCGGCTGGTTT
GGTTTCCTGGGCTTGGTCAACAGGGTGGTGGTTGTGACCAAGCCAAGGGGATTTTGCTCT
CTATATCATTTCGTGCCATGGAGATGCTTGCTCGAGCGTCCTTCGCCGGTGCTCGTCGTC
TCTTGGCACGATGTCGGCGTGCAGAGGGTGGAGGCGCCAAATTCACATGGTTGGCAGCCG
TTTGGTGGCGGAGCTGACGTTCTCCCGCGACGACGTCGCCTAGCCACGGCGAATCCGGGG
CCCGAGGTTCATGGGGTTGTCCCCTGGCCGACGCGCCACAACGAGATATGCTAGAGTATT
TTAACCCCCCTGCCAACTGACATGTTGATTCAGGATATGAACGTTTTGAGATCAACAAAG
TTCTGCCGTTGTTGTAAAAGAGAAAAAGAAAAAACCCTGCATTTCTCTGAAAAACTGAAA
GACAATCCTCTAGCTTCTCAAGCCTGCACATGGACATGGGCGTTCTTTCGGAAAGCAATT
CTGATTCTGAATCCTTTTATTACCGGAAAACTAAGTACAGAAGCGCTTCCTTAATACAAA
AACCTGCAGTATTGCAACCGTATGAACACCAGACATCTTTACAGAAGTAGATTAACTCTA
CGCAAGATCATCGGTGGCGGTGCTAGAATCAAACGCGGCAATTGACACTCGGTCGATGCT
GAATGCGCCATACCCACGGGCGCGCATAAGCAAGCAGAGGCCGTTGAGATCAGCCGGAGG
AGCCCTGGAGCCTGGACACGAAGCTGGATGCGGCGAACGCGGCGGAGCCGCCGGCGACGC
AGACGAGGGCGGCGACGGCCTGGAGCGCCACCTCCCAGGGGTACTGCTCAGGGACGAGGA
AGACGACGGCGGGGCCGGCGGCCAGCAGCAGGAGCGCGAGGCCCTGCAGCGAGCCGGGGG
TGCCGGGGTCGGTGGCGGCCGACAACACCCCGAGCTCCTCCGCCTTGGACAGCAGTCCGA
GCCGCTCCACCGCCGACAGCGACAGCCCGGCACGCTCCGCCGCGGACAGAAGGCCCGCCT
TCTCCGCCTTGGTCAGCAGCCGCAGCTTCTCCACGTTCGTCAGCAGCTTCACGGGCGCTG
ACCCCTTCGTCGTCGCCGGCCGCGGCGGGCCCGCGGGCTTCCCCACCGGGAACACCGTGG
TAGTGCCCTGCATGCGCGCCTCGGTAAACAGCAAGTTCTTGGACACGCACGCACGCACGC
ATGGAATTGACATGGAAACAAACTAACGGCCGGGGCTAGCTCACCGACGATCTTTTCGTG
CCGCCGGAGCTGGGCTTCGGGCCCTTGGTTGCCATGGCGGTGACACTGGGAGCAAGGCGG
CCCCTCCTGCCGGTCGGCCTCGCCGTGGTCGCAGCGACGGTGTTGGGCGACAGAAGCGAC
GCCATTGCCACCGCTCTCCTCGCGTCGTTCGATGGATCCCCTTCTCTTCTTCTAGCTAAT
GGTTCTGGACTTGGCGACGTGCAAACCTTCGTCCCCTTTCGCTTCGGTGGAGTGTTGTAG
CTGGTGTGTGCGGTCTCATGTCTGCCCGCCTGCCTGATCCATCCAAGAAGGAGACGTGGC
GTTTCTCCAGCGCTACGAAATCCAACGTTGGCAACGAATGACTAAAATCACGCAATTACT
GTGACAAAGGATTTAATCGAATTGTTGACATTAATTGACTCCGTGGCCCAATGGATAAGG
CGCTGGTCTACGAAACCAGAGATTCTGGGTTCGATCCCCAGCGGAGTCGTGTTCGTTGTT
TTCCTTTTTTATTTTGTATGTTCCACTAAAAATAAAAGTGCAAAGCCCAAAAAACACATC
AATTGACTCCGTGGCCCAATGGATAAGGCGCTGGTCTACGAAACCAGAGACTCTGGGTTC
GATCCCCAGCGGAGTCGGAACTGATTTCTGATTTTTCTCTCCTTTTTCTCCAGAGATCTA
GCGACCGATTCGGATTGGGTCGGCCCATCTAAGTGATCTGTGCGTTTTTGGTTTTGGGAA
CCTTCTACAAGTTTCAGCCGGTTTTTTATGGTTTTAAAAAACTTCTAGATAATACCTGAA
CGGATATTTTTAGTTATGTTTCTCTATTTTTTGATTTTCCCGTTTCTGTTTATTTCCTTT
CCTTTTTATTTTTTGATTCTTTTTTTCTTTCCTTTTTTTTATTTTTTTTCATCTCAATTT
TTTTTTATTTTTAAAATGTTTGCATTTTAATAAAAATGTCCATTTCTAAAGAAAATGCTT
CCAATTTCAATTTTGTTCATAAATTACATAAAAATAGAATTTGAAAATATGTTCACTTTG
CTTAAGAAAATTTTTGGTACTTCAAAAAAACAATCATCTTTTGTAATTTTATTCAAAAAC
CAAAAAAAGTTTGATTTCAAAAAGTTCCTACTTTTTAAAGTTTATTCACAAATTAATTTT
TTTTCTTTTGTTTCAATTTTGTTTCCAAATTTAAAAGTATTTGGGAATTTTTGGTAAAAT
CGCACATTTTTTGGAAAACATGAACATAATTTTTTTTATAGAACATAAACATAAAAATAT
ATTTTTTCACAAAGGCAACATATTTTATAACTCTCAACGAAACTTGGCAATGCGAACATT
ATTTGGAATTATGAACATTTTATGAAAATACGAATAAGTTTTGAAACTCGAACATTTTTT
GAATTAATAGAAGCAAGTTTTAGAACAAGAACAAAATTTTGAAAAACTAAACTTTTTTGA
GTTTCACACGTCAACATTGGAGTGACGCGCGTCCGAGTGGTCCGCGTAATCATTGATCTT
GTATAAGAGGTGCAAGGACTGATCTCGGCCGCTCATGCAACATGCACGAGTGCAAGGAGC
GATGGGCCCAAGACCCGTGCGTGCTTAGGATTTAGACCGGCGGGTTGACGTGTGTGTTGA
GCCTAGGTAGGGCTATGACGTGTTAATCTCCCGAGGCCGAGTATGGCCCAGGAAAGTGCG
TCCGACCGGAGCTGATCGAGTGTGTTGTGAAATGTGGCGCACGTGTGCACGGATGATATA
TCTATTCGAATAGTCGTGTTCATGAAAATAGGACGACTTTGAGTTGTATCCCGTTCTAAT
ATAACTAGACATGTGACTTAAATTGAAATGTTGTCTCTGAGATTGCTTTCTCGCAGGGAG
TCAAGGAAGGATCTCTGGGCGTACTAAATAAATTTGGTGCAACAATATGACATATGTGTT
ACGATCTACACTCTTCTAATGTTGCAAGACACTGATGATGCTAGTCTTCAATAGGACTAG
ACCCTTCCCTCTATTCTGGCAATTCTGGAGTCAGTTCAAAGATATAGCCTCATTCCTTTG
ATACTAATGCATACTTNNCATAGTTCTGATGTCAGTCTTGCGAATACTTTTGATGAGTAC
TCATTGTTGCTTTGCTCCCCCTTTTCCTCTTGATACAATTGCTGCAACCAGATTACGGAG
CCCATGAGATGGCTAATCCCGCCGACGACTACAACCCTGATGGAGCCTACTATTACATGG
AGGCCGGTGATGACGAGGAGTAGTTAGGAGGTTCCCAGGCAGGGGGCCTTGCCTCTCCAA
TCTATGTTACGTTTGTGCTAGTCTTCTTGGGGAAAACTTGTTTTCTCTTTTTGTACTCAG
ATATTATTTGCTTCCGTTGACTCCTTTGTATCCGAGATTATCTATTCAAGCTCTCTAGGC
CCCTGGCTTGTAATATGANGCTTGTATGACTTTAATTTGTGTCTAAAGTTGTGTTGTGAT
ATCTTCGTATGAGTCCCTAATCTTGATCATACGTATTTGCGTGTATGATTAGCGTATGAT
CAAAATGGGGGCGTCACAAGTTGGTATCAAAGCCAACTGCCTATAGATAGCCCTGATCGT
GCAATCTCTGGCGTTAACTAGACAAATGCTTATGACAACAAACNNNNNNNNNNNNNNNNN
NNNNNAGAATGCTGAAAGCACTCCCTAGTAAGGAAACTAGAAGAATGTTG