morexGenes - Barley RNA-seq Database

Contig contig_59635
Source Contig contig_59635
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_59635 (8595 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_59635

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71333	5	2165 bp	MLOC_71333.2	Available	Available	LOC_Os01g65110.1, FRAME:-3, EVALUE:0.0, 13101.m07033 protein POT family protein, expressed
CDS Structure of MLOC_71333

Contig Sequence (8595 bp)

>contig_59635 8595 assembly3_WGSMorex_rbca.fasta
AATGATATAAAAGGTACATAAAACAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATACGTTTGAGACGTATGAGGGATATCAATCTATTACTAATGGGAGAAAG
TCTATTAGTAAGAACCTTGGAAAAGATCTTAACAACACAATTACCAAGACTGGTCGGTCT
AAATTTCCTCATAGTTTTGGCATCAGGTTCTTTCGGAATTAAAATGATCAAAGCAAAATT
AAGTCTATGGATATCTAGTTTATTTTCCTCAAAATCCCTTATCATAGCCATGAAGTCAGT
TTTGATTAGTTCCCAAAAGGTTTGGTAAAAGAGGAAATACATGCCATCAGGTCCAAGGGC
ACCATTGGCATATGAACCAAAAATGGCCACCTTAATTTCTATTTCTCAGAAGTTTTTCTG
GAGGTTCTCGTTCTCAGTCACCGTAATCAGTTCATCTTCCTCCCAAAAGGCAGGACCAAG
ATGAATATTATGTCTCTCCTCATGGCCAAATAATCCTTTATAAAAGGATGTCGCCACCTC
CAGCATTTCCTCCGTAGTGTAAACAGGTCCATGCTCACCAACGAGCTCAGATAGATGATT
TTTGTGATGTCTATGGTTCGCTAATGCATGGAAATAAGCATTATTCTTATCACCATCTCT
AATCCTACGATCTCTGGATGTCTGCCATAAGGCAATCTCCTCCTTCCTCATAATGTTTTC
CAACTCAGTTTTAATGTCTCGCATACTTTTATTGTCCTCATCTGTAGTACGGCCAGATTC
AGCAAAGATATCCAAAAAATCGAACTCCTGAATAAGGTCCTTCATCTTCTTCTGAATGGT
TGCCTCAATATTCATATTCCAGCCCTTAATCTTTTTTCTAAGGCGCTTAGATTTAGCAAT
CCACACATCAATAACATTTCTACCAAAAATCGGGGTATTCCACACGGTTTCTACCATATT
TTTAAGCCAGGTTGCTCTAGCCACCATTTTTCAAACCTAAACATCTTCGGAGAAGTCACT
CTCCGGGCCAGCGTATCGAGTAGTAGGGCGGTATGGTCACTCCCAATTCTGGGGAGAGCC
CTAAGTACTGATAGTGGAAATAAAGCATCCCAAGAAGGGGAAACAAAAACTCTATCAATG
GTGGCATAAATGGGGTATTCCTGGTTGTTACACCACGCGTACTTCCTATTGCAACACTGA
TTTCTACCAACCCCCACTTATTGATCCAGTCATTAAACAGAAAAGTAATAGAATGATTCA
CATTACCACTACTCTTATCAGAGTCAGATCTAATCAAATTAAAGTCACCACCCAAAATAA
TGGGGTAAGAGGCCTTATCCATCACCTCATGCAACTCCGCAATGAATTCTACCTTGCAGG
CATGATAAGCACTACCATAAATTGCAACAAACTGCCATACTGATTTCTCAGATTTATTTC
TAACTGTATCTATCACACAGAACTCATGGTTAACAAAACCAATAATCTCATAAATGTCAC
TATTCATGCCCACAAGGACACCACCAGCTGTACCATGAGCAGACAGTTGACGCCAAATAA
ATTTTTTATTCCCGCAATTCTATTCAAGGTATTACTATCAATATTTTCTTTCTTGGTTTC
AAAAAAACAAACAAAATCCACACAATTTACTCTCAGGAACTCTTGAAGGCGTTGAATTTT
ACCAGGTTTACATAGCCTTCTAGCATTTCTCAGGTTTGGACAAGAGCTACCAAGATCAGC
AACGCCATCTAATCTAGTAGGAACCGCACCCTCACCTAGAGGAGAACCCCCATCAATCTT
ATGTGTTGGAGTGTAAAGATTATCAGGTAAAACAGTTTCAGGATTGGAATCTGCAAATTC
CAAACATCTAAGGCTCTCTCTAAGGATCAAATCCTGAATAATCCCACTTTGTTCCACATT
ACTATCTCCCACACAGACATCAACTTTAGGTATGTGTTCAACAAGAATTCGTGCATCATT
AGTAGCAAAAGATTTACCTTGGAAAGAAGCAGGGATTTCCAGATTCTTCTTTTGTAAATA
CGCAGTAGCTTTCTCCATGATCTTAATGTCGCCGTGTTGTCTTGTGGTAGGTCTGGTGGA
GAGCACAGGCCCCCATTTCTTATCTTGAACTGAATTCTCTTTCCTCCTCTTTTCCACCTC
CTCCATCTCCAAGGACTCCAACAGGGATCTCTTGGCCGACCCAAAGCTTGCTGCTAGGTT
TCCAGGGAGGCACACCATCTCAGGAAGGTTAATTTCATCTTCTCCCTCATACTCAACCAT
CTCAATCTTCCTGAGCTGGGCAGAGCAGTATTTCATATGAGAGCCAATATCCATATCCTA
TTGGTTCAGCAGAACCTCAACATCTTTAGTAGAGCCCTCACATGAGCAGGAGGGGTTTTA
GCTTCAGCTTCCACAATGAACTGTTCATGCACCTCATCATTCATCATCACAGGATGGAAA
CTAGCTGCAGAGATAGAAGCTACTTCCACCTTCTTTCCAGAACCAACACTTTTTTCTTTG
GAGAAATTTGCCTTGTCAAGTTCATCAATATGTTCATCAGCATTCCCATCCATATAGTCT
CTGCTTTGATCAAAATCATCTTCTACCTTGTCATCATCTTCAACATCCAAGTCTGGGTCA
TCATCATCCCCTTCAGGTCCCTCTCCATCTTGATCAAATCCTTCCACGGTAAAGAACAAA
ATGTATAGTTTCTTTTTCATCTCCACCAATCTCTCATATGGGATTTTGATAGGATACCTA
CATGCACTTTGATTCTAACTTTTTCATAGAAACTCTTGAATATTCCATTCCAATCCATAT
CCACCAAGATGCCAAAACATGAGGCAATTTGAGCAATCTATTTAGTGTACATTTTGTTAG
TTTTTCCTACGAACTTGGTTAAACTCTATACTGTTTGACTTCAAACAAAATTTATATACC
TTTTCCAACACGGAGGCAGTAAAACTTTTGTATCCATACAGAATTATTTTACGAGATTCA
GTGTTTGCTTGGATGACCCATATTGTCAGGCTACAAAAAGATCGAATGATTCATTCGGGC
TCAGTTAAGAAAGAGATCCCTTATGAGTGTTTTTTTTATGGAATTCAGAGTTCTCTGGGA
AGCATAATATTATCAGATTAAATAAATGATGAATGATTCACTCATATTCGGTTAAGAAAA
GACCCCATTTGAGTAATTTTTTTATGAGAATCAGAGTTCTCCTTGAAGGCATGAGCTGCC
TGTTTGGGATTGCTCTACTTCAAAAAATTCAGCTGCGTTTTAGAAAACATAAGTCAAACA
GGGTAGCTTCACGATATACAACTTCAAAAAAACTAGAATCTGGGGTCCAACTTTCTGTTT
TTTATGAAGCTTTCTAGAAGGTGCTCCATAAAATTGTAGAAGCTGGAGTTGGAACGAAAT
TACCCACCACTGCCACCCGTAAGTGGATACCCCTTCATTTCTCCCCTCTCATCCAATCAA
ATAGATCATTTTCACCATATTTTTCATTCGTGAAGCTGGAGATGTATAAAATCCAAACGT
TTTCTTTGAAAGAGGTACAACTTTCATATGAAACTGCTTCAAAGTGGATTTGGTGAAGTG
GAGCTGCTTTTGATGGAGCAGAGCCGTCCCAAACAGGGCCGATCAAAATCGAATGATTCA
TTCAGGTTCGGACGTTCACTTAAGAAAAGACCTTTTTTTCAGTCACGTAATTCAGAGTTC
TCTTGGATGCACAATATTGTCAGGCTATACATCTGGAGAAAATTCCAACCCCAAAATTTA
TGACACTCTACCTCGCACTCTATGACAATCAGAATTTAGTTACACGAGTGTAGCATCCGC
ATCACCTCCCCTGTAATCGCCATTGCCCTCGCCATCGCCGTTCTTCCTCTTGTAGACATA
AGCTCGTGAGAAGAAGAAGAATGCGACCAGCTCGACGACGCAGAGTCCGGCGAGCAGCCA
GTAGAAGTAGTCAAGGTGCGCGCGGTTGAGGTTGTTTGAGAACCAGCTTGCGCCGCGCCT
CGCCGTGGCCCTGTCGATGACGGAGATGAGGAAGCTGCTGAGGAGGTGGCCCACGCCGAA
GATGCTGAGGAAGAGCGCGAGGCCGAGGCTGCGCACGGCGTCGGGGACCTGGTCGTAGAA
GAACTCCTGCAGCCCGATCATGGCGAACACGTCGGAGACGCCGATGAGGACGTACTGCGG
CACCATCCACCAGAGCGTCATCGGGAGCCGCGCCTTGGGGGTGTCCACCAGGCCGGCGTC
CCTGGCGACGCCGAGCCGCCTCATCTCCACGAGGGCCGAGAGCACGACGGCGACGAGGGA
GAGGGACAGCCCTGCGCCAACCCTCTGCAGCATGGTGATGCCCGTGGGGCGCCCCGTGTA
GCGGCGCGCGAGCGGCACGAAGAGGCGGTCGTACACCGGGATGAAGGCCACGATGGTGAC
GCTGATGAAGGTCTGCAGCGCCGCCGGCGGCACCTTGAACTTGGGGCCGATCCGGCGGTC
CAGCGTGGCCGCCTGCTTGGTGAAGAAGGTGGACGTCTGGGAGAAGATGATGGCGTAGAT
TATGCAGCACGCCCAGATTGGCAGCAGGCGGAAGACGCTCCTCACCTCCTCCACGAGGTC
GTCGGAGCTCTTGCCGTCGACCTTGCCGTTCGCCGGGCTGCACGAACAGTCACGTCGTCA
GAGTGAGGCCATACAGCAGCAGAGTTTGGTTCAACCATGGATACGCGTACGTACTTGGTG
CGGTGTTTTGATCTCCAGCTCTTGATCAGCACCAGGAGCGCCTTGCCGACGCGGGCGACG
GGGCTGGGCTCCTTGGTGGTGTAGTAGCGGTAGGACGGAGTGCCAATGAGGAAGACGGCG
AGGGAGGCGACGATGACGATGCAGGGGATGCCGAAGCCGAGGCCCCAGCCGACGTTGTCC
TGGACGTAGCTGGAGACCATGGTGGTGACGGCGGTGCCGGCGCACATGCCGAAGTACCAC
CAGTTGAAGAAGGAGCTCCGCGCCACGTTCTCCTTGGGGTCCCTCTCGTCGAACTGGTCC
GCCGCGAACGCCTGCGCGCACGGCTTGTGCGCGCCCTCGCCCAGCGCCACCAGGTAGAGC
GCGACGTAGAAGACGGCCACGTGCCCGCCGGACCGGAAGATGTGGAACGCCGACGACAGC
GACAGCGTGCCCATGCTCTGGATTGAATTTGAACCGAACGAAAGGATCAAGACGGAGTTG
GAGATCAATCCCATCTAAACTGGAGTAGCACGGAGTACTTGTGATGGACTCTTGTGGCTG
GATTGGAGTGGCGACTGACTGACCACGACGAAGAGGACGGAGGCGAGGACGATGGCCCGG
TAGCGGCCGAGCCAGGCGTCGGCGACGCAGGCCACCGGCAGCGGCAGCATCTGGGAGACG
CCCTTCCACGCGTCGATGGACGCCGCCGCGCGCGCCATCGGCTGGCCCAGCGGCCCCGTG
AGGTACGTGATGAGGTTCGCCGCCACGCCCTTGTACGCGAACCGCTCGGCGATCTCCATT
GCTGCATGCCAACAAAACAGCAGCAAAAGCAACAAACAAACGTATCGGTCAGGAGTCAGA
GCTCGAGCTGGAGCACCCAACAGGTTCGGCGGTCACGTGCTAGCACAAGAGATGGGCGCG
CGTACGAAACGTACCCATGACGAAAACCGAGGACTTCCAGCCGCCGGTGGCGGCGCGGGA
GGCCGGCCGGCCGCGGTAGTCGACGGCGCCAGCGACGGCGTCCCCCATGGCTGCGGCGTC
GGCGTCGTCTTCGAAGCGTGGCGAGACTAGCAGGCTCCGGTGAGGCATGGTGTATGTCAG
CTCGCCGCTTTATGTAGGCGCGCGGGACTGATCGATCGATGGAGGCGATCGTGCCCTGCC
ACCGCCAGGCGTCGCGTGCAAGGCGAGACGTGTCCAGCTGATCGCGAACCAGCAGTGCCC
GGATCGATGAACAGCATTTATGGCCCGATTTTTTGCCGAAAGGCGCCCCTCCTTTCTGCT
GACATCTTTGTTATTTCGTCCAAATTTAGGGTATAAAACACACCGTAGCCTCCTTTTCAA
ATTACCTCCTCATTATTCAAATCCTACTAGTACGAGATTTTAAGCCGTGCCTTGTAACAC
GAGTTTATGTCTTGCCGCTGATACGCGAGGCGTGGCGCGCCCGGGCGGGCATGCGAAGGC
CACGAGCGCGGAGATTCCCGGCACGCGCGAGCGAGCGTGGGTGCGCGGGGGCCCTGCCCG
ATCGGATGGGCGGCTGAGATCTGCCCAGCTCGAAAGGGGTGGGCGCGTACGCAAGTGCCG
AAGTGCACCCCGGCCCCTAACCGCACGCATGCACCTTCCGTTGCCCCGATTCCAAACCGA
TGGTAACTAGCGGCTGCTATGGAGGAGGGGCTTGCTTCTGACTTGTGACAACTTTTGAGG
AAAAGCAACGGACACAAACTGTTGGCGATCGGATCACGGTATGGCCTCCGCCGGGAATGT
TATACTCCACCACGATTCCTGTATAGCTAGCTAGCTAGAAAATGACTTGGGGCTGAGTTT
TAGTGAGAAGCACGAGACAGATGGCGCATGATGTACACTACATACACATCGATCCTCTAC
GTACACACATGCATTCCCGGTTCCTAGTTCCCGCACACTTGCTCGTACGAGAATATTGGG
GACTTTCCGCCCCCACCGAGCCATGGCGATCGCCATCAACTGGTCCTCCTTCCTGGGCCT
TGAATGGTCGTTCGGCACGGCACAGCACGCCTGAAAGAAGTAGGAGGAATCTAGCTTTTG
GTTCAGCATCCAATGGTTACGCAACTGGCTAGCAGCTCAATACAAGCCGATCGATGTCGC
TCACCCTCCACCGCAGCTGCCCGCCGGTCAGCTATGCCGGCCTGCCTAGCTAGCAGCTAC
TCCACAACCCTAGAACCTCACCTTCATCGGCGTTTCTTTTTTTCTTCCTTTCATTGGAGA
TTCACCGGCGTGCGACAAAGCAAGAGAGATATTTATGCATGCATATCTCGGATCTGGTCG
CCAATCATATATCTTCTGTGCTAATCACGTCACGTGCTAATTATAAAAGCTGGAGAAGTG
TTCTGTATCCACCCGTTATGGAATAGCGGCACTGCACGCTTTTGATCAGGATCAGTCCTC
TACAGATACACTGAACGCTTTGCGAGCATGCGTGCGTGCTTTTTCCATATCGCCTCTATT
TTTGTACCCATTTGTTATGTTCGTCGCTTTGAATTGCAACTGCCTTACCAAACATGATTA
GACTATTATCCCCGCAAAACAGACATGATTAGGCTAAAAGTGTTAAGCACTCTCAAAGCT
ACAACAGCAATATAAGACACGCATATGTATATTCTTTCGTAGAATCATTGTCATTAGATG
TTTAGATTTGGGTAATAGATGTAGTACAGCTTTGCTTTCAAGCATGAGCGCACTACTTTG
TAGTACTCTCTATTGAGCTAAAACCACGACATTTATTAGATTTGTGTATCTTGTCACAAG
GTCACATGGTGCGTCAGGGCATAAGAGCATCTACAGCCGAACTTTGCAAGTCTGGTCTCT
CAAACATCCATGGACATGCCCTCTATTTTTTCGTTCGTGCAGCCGCATCTCTTATATTTA
TCTTCATATGGTCAGTCACTTGCACGTGATTGGTGGAGAAGAAGAGAGAGAAAGAAAAGA
ATGAATAAGAAAGAGAAAATGTGGTTCCGGATGGGGTCGCGTCCTACATGGCGAACTAAT
CGGCGATGTCCGGACACGTCTGCGAGCCCTCATATCATCCCCATATTTGAAATGGATTTG
AGGGGTGCTGATCAATCCACGCGTTTGAGATGGGTATGAGGGGTCCGGCTGGGACGACTT
TTTGTGACCAGTGAGTGACCGTGCGGGCTGTCCGGGCGTTTGAGGCGGGTGTCGGTGTGA
AAACTGGCTGATCTCGAGTAGGGGGTCCGAACTGTGGATCTTGGACCGATGGGTAACAAG
GGACGAAGGAGACAGTGTTTTCCCCAGGTTCGAGCCCTCTTGATGGAGGTAAAACCCTAC
GTCCTGCTCTTGTTATATTGATTAATTAGTACAGAGTATAGAGTTGATCTATCTCGAGAT
CGGATGTCGTGGTCTAAAATCCTAATCGTAATGAGCGTAAGTCTTGTATGAACTACATCC
CCCTGGTTTATATAGATACCAGGGGTGTTTAGGGTTTAGACAACGACGGTTACATCAAGG
AAAGGAATATGCGGATTAGCACGTTTTCTTGGCCTCCACGCCAAGTCTTCGGAAGAGTCC
ACCTTGATCTCCATATCTTCAAAGATGACCGAACGACCCACGAGTTCGGCCCATAAAAAC
AGATAAGTGGCCCGAAGACCCCCTTAATCCCACACTCCCTAAGTAACCCCCCAACTAGCC
TCCAATGCCGCAGTCTAGGCTCACCATCTTCACACTTCTGCAATCTTCAGCTTGCGGAGC
GTGTTCCGCTTATATTCGGTTGATCCTATTCCGCAGTGTTTTTCATCCGCGGTTGATGAA
ACGTTGCCGGCCCCACAAAAATAAATATTTTGTTGGGTTCTATCGTAGGTGCAAATTAAA
ATTTTCCTACGCGCA