morexGenes - Barley RNA-seq Database

Contig contig_59611

Source Contig contig_59611

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_59611 (2262 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_59611

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71324	1	1213 bp	MLOC_71324.1	Available	Available	LOC_Os05g33130.1, FRAME:-3, EVALUE:3e-138, 13105.m03421 protein CHIT17 - Chitinase family protein precursor, expressed

CDS Structure of MLOC_71324

Contig Sequence (2262 bp)

>contig_59611 2262 assembly3_WGSMorex_rbca.fasta
GCCGACGGCTGCCGTCGGCATAGAGCTATGCCGACGGTAGGAGGGCTATGCCGACGGCAT
CTGGCTGTAGGCATAGTTGAAAATTCTAGTAGTGTTTGTTTCCCAGTCCTTTAATTTGTT
CTGATCTGATAAGCATAATTGTAATGCTTACTTGTCTGTTGATAGAAGTGCTTATCCGTG
TGAATTTGTAGTAGCTGTTTGCTTACTTCTCTGTTGCTAGAATTATGCATACGACATGGG
AAGACATGTCTTCAATAAAGGACCTGTGATCGTGTGGAGCGACGCTCACACACAACAACG
TAAGGCAAGTTTATTCATACATTTATTTACTCAATAGATAGACTAGTCCTCGAGATTATT
TATCAGTAATCACATGCACACGTACAGGCATGCATCGATCGAGGACTCATACGTTTAGAT
GGTAGTATATATGTTGTTACTCCGTTACTCGCTGAATCAAAAGCCCCTCGACGAAGGGCC
TCTGGTTGTAGCAGTCGAGGTTGCCCCCGTAGCCGACGTCAAGGATGTTGCAGTAGCGCT
GGTAGAAGCCGATCCGGTCGGCAACACGGCTGTCCGCCCCCCTGCCGCACTCGAGCCCGC
CGTTGATGATGTTGGTGATGACGCCATAGCCGGGCACCCTCCCCGCCGCGTTGTCTGCGG
CCGTCGGCGTCCATTGGCCCGTGATCACGGCGTGAGAGGACGGCTTGTTGGCCTGCGGCG
TCATCCAGAACCATAGTGCCGTCCTGAAGGACACGGTGGCATCCGTGGCCACCAGGTCCG
GGTTGTTGAGCAGGTCCACGCCGATGGCGCGCCCGGCAGGGCCGTAGTTGTAGTTCCATG
AGAGCATGATGGGGCCGCGGCCGTAGTACTGCCTGCCTTGCACGCACGGCCACTGGGAGG
ATGGCTGGCAGTAGTCGGGCGGCGAGCCCAGCTCCCGCCTGTAGCAGTAGCCCCAGGAGT
AGGGGCCGTCAGGCGCAGTGGCCCAACCGCCGGTGGTCTCATGGGAGGTCTGCCCGAAGA
AGGCCGCCACCTCCTGCTTCCGCGTCTCGGTGCTCCCCGTGGTGCCGAAGGCCGGGAACG
TGGCGGCGGCGGCCAGGAATGCGTCGTACGTGTAGAACCCGGCGGCATCTTGGCATCGGT
CGCGGTGGAGGAGGAACTGCTCGAAGAGGTCCCTGGAGATGATGGACGACACGCCCCCGC
CGGGGCTGGGGCCGGGAGGGGTGGGGCCGCAGCCGCTGCACTGGCTCTGGCAGCCGGCGC
CGCAGTAGTCGGAGGTGCTGCCGCAGTAACCGAAGCGGCTGCAGCAGAGGCAGTTCGGGC
ACGTCGCGCCGCCGGCCTGCGAGCCACACTGCTGTGCGCGGACCACCATGGCCATGGCGA
GCGCCGCCGACAGGACGATGGCCACCACCACACTCGGGCCTCTCATTCTCAGTGTAGGCA
CGGTCTGGTTGATCTCGATGCCTATTGCCTCATGGATTATGGCGCCAATTTATAGACCTT
ATTTGGTGGAGAGAAGCCGTCCTGTGATTGTATGCAAGATCAACTCTGTGTGTGTGTGGA
AAATCGGAGGAGAAAGGTGTGGTTTGAATTCTGAATGTGACATGCCACAATTTTTGTTTT
GCAAGAATGTGACATGACACAAATTACCCTTATCATCTTCATTACTACAGGATCATGTGA
CATGTCTTCTCTCATAAATTGTTGAAATTGACCCAACATTCATCGATCAACGACAGAAAA
TTAGCCTGCATGTTGTCCTGTTCCCAAAAGATATACTGATCTGCTCAAACTTGTTGTTTT
GTACTAATAAAATATGAGATTGGCCTAGAAATTAACCTTAAGATTAGCTTGTACTAATAT
AATATGTTCTCCAACTTTGTGATGTGTACTATAGTTACTACACCAGGGTCATAGATAGCC
CGGCGCATAGTGCATATTACGGTGGACTTATTTTCTTGCCGGCCCTCCCAATTTTGTGCC
GAATACCCATTACCACTCCATATTTTTAGTCCAATAACACAAACCATCTATAAAATGGTT
ATTTGATGGGAGACTAGAGACTCTCAGAATCAACAGAGTCGTATTACTATTTTCCTCCAT
TAATGCGAGTGGCATCATCCAGAAGACATGTCACTTGCTCTTTTGATAAGACATTGAGGT
CGAAATAAAGGAAGAAAGAGATCCTGGTTGTATGTACTTCCTCTGTCTCAGTTTACAAGT
CCGGTACATGTACCTAGGTGGTAACCATAGAGGCATGTTTAC