Contig Data
morexGenes
Links



Map Locations of contig_59566 (4825 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_59566

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71306 1 803 bp MLOC_71306.1 Available Available None
MLOC_71305 3 966 bp MLOC_71305.1 Available Available LOC_Os06g02230.1, FRAME:+1, EVALUE:3e-32, 13106.m00142 protein B3 DNA binding domain containing protein, expressed





CDS Structure of MLOC_71306






CDS Structure of MLOC_71305






Contig Sequence (4825 bp)

>contig_59566 4825 assembly3_WGSMorex_rbca.fasta
TACTTGTCCTAAAAATGCATATAATGAATGTATCTACAATTAAAATAAGTCTAGATACAT
TCATCTCTANNNNNNGTATTTCCGGACGGAGGTAGTACATGATTTGAGCTGAATCTCTTC
TGGATTCAGCATAGGAGAAGTAATTCTAGTAGTGATGGATGAACCTTGGCAGCTCTATAT
GTCTATATGCGTGCTAAATCATTTAATTGTCTTAATTCTATATATAGTACTGCTGTCTGC
TGGTTGGTTGGTTGGTTCTCTTCCTTTTTTTTCTTACCACGGTGACTTGGTAAAGTTCAG
AAGGCTTAAAGTTGGCTGCACAGGCGCTCCACAATGAGCAGTGGACTTGCTAGCTTTGCC
ATTCGTTGAAGAACATCCAAGTGAAGTGGCTCCTTCTCTTGCCTGCTCTGCTCTTCTACT
CATGGTGATCATCTTCTCCCCCACTCTGCCGCACCCCAAATTATATTCTCCTCGCTCAAT
TTTATTTTCCCCTCCACATGGATTTATAATATTTTGATTCCCCTGTTTTTGTATAAGAAC
ATAATTTTTTCTGTGAAAAAATAGGTCTTGCAGCAGGGTGCGGGCGAGGATGACGAGACC
ACCCCACTCTCCGGCGACCGGCCCTTCTTCACCGTCGTCATGTGCAAGACCCATGTCCAG
AAGCCCTATCTGCTGGTATGATACGATGCTGCAACAATTGCGGTAGCTTCATACTCAGTT
GGTCATGTCCTGAACTCCTCTTCTTCTTGCGACGGAACCTGCAGATCATCCCGACTCACT
TCCAGCGCCGGCTGCCTGCAAGGCGCACGGCGGTGGTGCTCCGGTGCCGTGGGAGCTCGT
GGATCATGAGCTACTCTGGCCACACCAAGCTGAAGAACCTCGCCGCGGGCTGGGCGGACT
TTGCCATCGACAATCGGCTGCAGGTCGGAGATGGGTGCGTGTTCGAGCTGTTGTCCGGGG
ATGCTAGAGATGGCGGTGAGGGGGAGGTGGTGCTGGAGGTGCAGGTGCTTCGAGGTCACC
TGCCGGAGCCGGAGGATCTCACCACCAAAGGAGAAAGTGCCGACGAGCCCATGGCCAACT
ATCATTGTTAGCGAGAGCTAGGCTTCACTTGTTGCTGGTGCAGTGCAAGTCGATTAAATG
TCTTCTTGTAAGCCATCGGCCAGCATATGATTGCGTTGCTGGTGTCTTCTTGTAATTTAG
TCATCGTTCCTAATTTCTACACGCGGATAGTCTTTTAGCTCAAGGCGAGCGCCATGCATA
AACACTTCATCAATTCCACTCTCCTCCGTCATTTCTTTCTGATGGCCGCATGTGCGCACC
ACAATACTCTATTTATGAAAGTTTTTCCGTGCAAAATTATCTAGGAGTACAATTGACTGC
AGATAAACATTTTGAGCAAACAAGACAGTATTGCAGAAGGAGCAATTTATTATGCCCACC
GGCCAGTGTTTTCTCTCCGTGTTATATAATCATCACCTTCCTCTTGCTTCCATACAACAT
TTGTCCGTCGAAACATTGCAAGAAAAAAACAATTTATATACGACTGCCAAATGAGTTTTC
TCTGCATTCTACAAGCTCAACATCTTTGCTCTCGCATACAAGCAACAAGGAAAACAAAAG
GAGAACAGAGGTTAATTTGAGAATAGGAGACATCGGAAATGAAAATTCTCAGATGCATAG
AGTTGCATGGTTTCACGTGGATAGCTGCGCGACAATGACGGGAAGCCACCGCTCGGGCAG
CCGATGGCTGCTGTTTGCCTCTGTCGTGGGGGTGTGTGAATGGCGGCTGCTCTGCTTCTT
AGTCGTCCGCTGCAACGACATTGAGTTCAAGCTACTGCTAGTTGTAGTTTATTATTTTGC
TCCAACACTCGGCTGGTCACGGCCTAATCGGCCTTGCCGTAGCTCCGCAAGTGTTTGGCA
TACCATGGAGCCGTGGTTGCACTATGTTTGCCGTACCAGGGAGCAGTGGCGGCCGATATT
TCTGATGGGGAGATGCCAACAGCCTAGGAGTCTCAGCAATATCGGTGACGGTGTATCAGG
ATCGACTTGATCCGTGGGAAATGCTTTCTTGATCTTTGAATGCCCAACACTACACCATGT
TGTTCTGGGTTGTGCAAATTGGGGGAGCGTAGATTTATTGTTTGATGTATGATGTTGATG
TTTCCCGGGGGTTTATTGTCATGATTATACTTTCTCGTAGCCCCCCATGCAAAAAAAAAA
ACTTACCATTACTTGGAGCCATTGTATGGGACTTTGCTATATTTTTTCAAACTATGCACC
ATAGTGAAGTCCAACTTAATATGTTGTTGTATTGTTGTACTGTAATTGATATGTCTCCAA
CGTATCAATCTTTTTTGTAGTATTCATATCATATTTAACCATGTTTATAGTATTTTATAT
GGTTTTGATCTACTATATATGATTTAATTAGAACTAATCCGGACTGACGCTGTTTTGAGC
AGAATTACCATGATGTTGTTTGTGTGTTGAAAATAAAAGTTCTCGAAATCGACCGAAACT
TTTTTACAATTTCTTATGAAAGGAAACAGACGTAGGAAGCTTCAAGGGAGTACCAGAAGA
CCCACATGGGCCCCACAGTGGTCGCGCCAAAATACCTTGTGCCCCCCTGTGGCACTTCTT
GGCTTGATTCCAACGCAGAAAAAACCATATATATTCAGAAACCCCCGAAAGTTAACCTAG
AATTTTCGCTCCGCCGGCGCAAGCTTCTGGTCCGACGCTATCTCATCTGGAGCCCTGTTC
TGGCACCTTGTCGCAGGGGAAAATTATCACCAGAGGCCATCTTCATCATCCCGACGGTCC
CCATGATGAAAAGGGAGTAGTTCACCCGTGGGGCTAAGGGTATCTACCAGTAGCTATGTG
TTTAATCTCNNNNNNNNNNNTTCTTGAGATGGCACGGTCTTGATGTATCACGAGCTTTNN
NNNNATAGTTGGATCATATGGTGTTCTTTCTTTGCTATCTTGATGCGATGAATTGAGTCT
TTCCCTTTGAGGTTTTGTTATGTTGGATTGGATTTGAGAACACTTGATGTATGTCTTGCA
TGTGGATACCCTGGTGACAATGGGGTGTTCTGTTGATTCACTTGATATATGTTTTGGTAA
TCAACTTGCTGATTCCCGTGGTGACAATGGGGTAATCTATGCATATGGGTTGATACACAT
TCTTGTCCTACTTTCTCTAGTAGAAATATTGGGTACTCTTTGATGTTCTTTGTGTTGAAT
AGAACATGACGAATCTGAAATTGTTTGATGCGTGAATCTGAAATTCTAGGTCTCTTTGTG
ACATATATATGGTTGACTCAATAGACTGATCGAAAATGAAAACTTTAAGGTGGTTCTACT
ACCTACAACAATTACATCATATGTTCTTCGTTAGATAGGAACATTGGAGTGATTCTTTAT
CGCATGTTGAGGAATAGGTATATGATTTAGTTATGCTAGCATTGTTGAGAGGTTGCACTA
GTGAAGGGATGAACCCTAGGTCTTGTTGCCAAGCACTGATATAACGTTTTGCTCGTTGTT
TACTACTTGTTACCTTAACGTTTTTATAATTTCAGATTACAAAGACCTATTTCTTCATTA
ATATTGCACTTGTATCACCATTTATTCGCCGAACTAGTGCACTTATTCAATTTACCATTG
TATTGGGTATTTTGAGGACACAAGAAATTTCTTGTATTTGATTGCAGGTATGTTTGGGAG
AGAACAATTTCATCCTACACCTCTCATGGATTGATAAACCTTAGGTCATCCATTTGAGGG
AAATTTGTTATTGTCCTACAAGACTCTGCAATTGGAGGCCCAAAAACATCTACAAGAATA
AATATGTGTAGTTTATATCATTTATTACATCAAAACCTTTTGAAAAGGCCGAGGAAGGCC
TCCAGAATTTCATCCTCTGGACCAGAATTGCGTAAACGTCATGCCGGGAAGGGCACGATG
CTTGGGAAGCATGGAGGAGCTCGTCAACGCCGCCTCCACCGCCTGTTGCTACCCCGGTAG
GTCGACATGGTCAAAGCCGATCTGGGGCAACAAAGTTCTCTCGGCCTTTTTCCCAGTTGA
TGGGGGTGTGTCCGTCTCCTTTTCGCCCTACAACATTGGAGCCTTTCAGGCCAAAGATGT
CGGGCGATCGAGCACTGGCTGTTCCTTGTCAAGGGGAATCTTTTTCCCCTTGGTCCTCGG
CGACCCAGGATGAGACCTCCCATGATCCGCCTCTTCCTAAGGCTCTTCTATGTACCCCTC
CGTTTTAGACACGAGAGGGGCAGAGCATGATGAAACCTCCCCCAACCAGCGTTGAGCAGG
GGGATTAGTGCCCATGTCCGAGGAGCTCCGAGCCAGAGAGACCGAAGGAATTCCGTCAAC
CGTGTCTTTTTTGGCATCAAAGCGGTGTGGTGGGCTGATAAAGCAAGGAAGTAGGGGAAT
AAAATCATATTAGAAAAAAAATGCTTTGCAAAATAAATGGAAAAAGGCATTAAGTGAATT
ACCTTGTCGGGGTCGGATGTCCCATGCGCTTGGGCGTCCTTAGAGCAGCTAGAGTGCACC
GGTTCCACCGGTGGCGATAACTGGGCACGCAGGGTGACATTGGGCGTTCTTAGAGCAGCC
AGAGTGCACCGGTTCCTCTACCTCTTATACGACCGAGTAGGACCTGTTAGCACTAATCTT
GACAGATGCGCGTGTGACCGGGTCGTGCGCAGCTGCTGGACCAAGTCATGTGGCCGTTGT
GGACATATTGCTTGAGTGGCGTACGTGCGCCTGCATGTAGNNNNATTAGTCGGGTCAGTG
GCCGAACATGGCGGCAGGTTAGTGC