morexGenes - Barley RNA-seq Database

Contig contig_59487
Source Contig contig_59487
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_59487 (10223 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_59487

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71277	2	1614 bp	AK361729	Available	Available	None
MLOC_71276	2	1365 bp	MLOC_71276.1	Available	Available	LOC_Os09g29970.1, FRAME:+1, EVALUE:2e-116, 13109.m02982 protein TMV-MP30 binding protein 2C, putative, expressed
CDS Structure of MLOC_71277

CDS Structure of MLOC_71276

Contig Sequence (10223 bp)

>contig_59487 10223 assembly3_WGSMorex_rbca.fasta
CTTTCTTGCATCGAGGGGCATCTCCATATAAACCTTAAGCCATAGCATCTTTTGATTTTT
TCTGAAATATACTTGGAAAACACATTATTCCAATGATGCATATGTTGTGATCAATTATCA
AAACTACCCTAAGGAGCAATTGTGCTTTCATCAATTGACATACATCCAGGAAAAATCATA
GGCCTATAGAATGACCACTCTTGGAGGCATCAAATGAGAAATAACACTTATTGAATTGTC
CATGGTGATCAACTCGCGGAAAAATATACTCCCAGGGTTTGATCACCTTAGCTCGATTGC
ATAGTCCCATAAGGCCATAAGTTTTCGTACTGAACCATTTCATCTCCTTCAATTATATTG
AATGCATGCATCCTTGCTCCCACAAATCTTCTGCTTCACACCTTTCATGGTATACTCTTC
CTGAATAAGTACTCCTAAACTTTGTAATTGTATTTTTCATCTACTCTTATCTTCTCCAAA
TATCTCTCATCTATGAATTTGGCACTAAATGATTTTACTAACCACTGTTTGGCTCATGTG
TGCTCACCATTTAAAGTCTTCATCATGAATGCTTTTGTCATGTTATCGTATTATGCATAA
ATATTCCAAGGGCACCCATGACAACACTTTCCTCTCACCCTTTTTCTGACATTTTTTGGG
AAAGGTAATTCACAATCTATCCTTGTAACGATATTGCCTAGCGGTTTAAAAAATCAAGTG
AGGAAAAATTCTGCCCACATGAAAACTTGATGAATTCATATCTTCTTTAGAGAAATGTGC
GAAGTTGAACTTCATTTCCTCATCTTTTGAATAAGAGAAGTCGCAAAAATTGACCAGTTG
AATTTATATCTTGTGCCAACTCTTTCATTTCCCTTCCATTCTGCCCGGCTTTTCTTCATC
ACTATTCCAATCTTCCTGCACTAGGTTTTAATCTACATCCTTGACTCAAACTCACTCGTC
AATCCTTATTCTTCTTCTTCTTGTCTGCTTGCACTGTTGCTTGGTACTTCCACACTTGCA
TGCAAATAGTTTGTTATATCATTAACACATACAAAGATCATGCATTGATCTGAACTACTA
TCCTCTATGACCCCTCTACTCCTCTTCATTGGATTAATAAGAGGAGCCACATTTTCATAT
GGGTTGTTAACCACATCATCTCTCTTGCAATCATAGAACGCATGGTGTTCACATGATCAA
GATGGGACATCAGATATTTGTGCCCCATTGTAACCATTGGCTTGATGCGGGTGGTGTAAT
TTCTATCTTTAATAAATGTTAGTCCATGCTCATTCATTTGCATTCCTCGAAGCAACATAT
ATGTTCTATTAATCATGTAGTCTCATACCCCAACTCCTCTATCATTTCTTCCAACAATGA
CAAAAAGTTTCCCTAGCATCACACAAATAAAATTCCATTCAGATATGACCTAATCGCTCC
GATATGAAAGAAAAACCAACATGCACTAGCTCTACGTGTACAAATCACTACCTTCATGTG
CCAAATGAAGAAAATCGGAAATTTTAAGACAGTGGACTAAAACCATATGAAGCAAAGTAA
ACCCTGGGCGAACGAGCTCGAATCAAACGTGATTCATGATTAAAACTGAACTAACGCAGT
CGAAACCTTCACATTTGAGGTCCATGTGAACAGAATCAACGTAGTTTTTTGAGTGGCAAT
GGACCATATCGCGAGAGGGGTTTGCTCCGGCCATCGTATGCCCATCACATGAACTGAGAT
GCGGGGTTGCGAGAATGTTGTCGCCAACCGCGCTAGATCCCCCATGCTCGAGCATGTGTG
GTTGAGGCCACAACAACTATCATCTTGCACCACCCCACGACGTCGTCGCCTTCGAGCACG
ACGTAGGGTTGGGATGGACGACAAATGAAAATGTGTTGTCTTGGTGAACTCTATCGCATA
TTCACATCAATGTCGTAAGCGGTGGCACGCGGGTTAATTTTGAGCAAGATGAGGGGGTTG
TATGCAAAATGTTTGCCACGGGCGCGAGAGGGGTACGTCTCGGTAGCACGACGCTCCGTA
GAGGGGGCGTATGGAGAACCATATTTTTTTATCTATTTCGTGTATAAAGATTGTGTTGAG
GAAATTTTCAAATAGAAGGGTTAGTGAGGTGTGTGCCCGCAAGTTAAAAGGACAAATCGG
GGCAGACGAGAAACCATAGTCGTCGTCGCCAAGAGAACCAATCTTTAGGCACCGTTTTCG
GCGGCTCTCCTCCGCCGATGACCTCTTGGCTCGTCGGTCGTGAGAGGGGTCGTGAGATCC
CATGCACGCGGATCGTTTTTTGCTTTGGGTTTAGGGCCCTAGTAGCTTAGGTTTTGGATC
GTCCAATGTCTTGGCTTCGACGGCAGCGAGGGCGATGCTGAATAAAGAAGCTCCAAATTC
TTCTCCGGCGAGGCGATCGTCTTTATGGTCGATGATGGATTTGGGAACCAGTGTGTTCAA
GTGAGGATATCGTGGCAGCGACGGCATTCTTGTGGTGGACTTGTGTCATCGGGCTCTGTC
ATTGCGACGGTGTCTGTTGCAGCGTCGGCGTGGAGCTTGAGAGGTAGTCCAGGAGCGGAT
GCATATTGTGGTATGCATCGATGATATCTGGAACATGAAACGTATGATGGATTCGTGGTT
GATGGATGACACGTATGGTTTCCTCCTCCCGCGTCATAGTCGTGGCGGAGTGTTAGATTT
GGAGTTCCATGGCGTGTCCAGGGTGTTGCCCCGATCAGATTCTTTCAACGACAATGGCTT
CATCTTTGGTGAGCCACATTGAAGGTCCGCAAGGCTGTATATCATCGATGAAGTCGCGTC
GAGCTCGGGTAAGGAAGTGATCTGTCAGTTTTTTCTTTGGTGACTATTGTGGTGGTGCCG
AAGGCAGATGACGGATGTTGATATCAAGCTCAACAAATTTTACTATCTTTTTAGTTTTAT
CATATCAGTCTTTACATGATTTATAATTTAATATTTATGACATAAATAAGATACGTATTA
TCGTAAAAAATGTAAGGACAGACCGTATAATTTTTTTGAGAAAAATGGGTGCTACTCGAG
AGAAGAGACCGGTAACGAGAAAGGAGGGAGGCACGGCGAAAGCGACCCATACTTGCACCT
AACAACCTTTTTGACAGTTCAAAATTAAAAAGAAAAACAGTTCCTGCGGTGGCCGACACG
TCGTAGGTTCCCCATATTTTCCCCAGGCGGAATGTTGCTCGACGGCGACACGACTGCGAA
GCATTTACTCATCCTCAACGAAAAACGTTTTTAAAAACAAATACGAAGTGGAGTAAATCC
CAGAACAAAATCCCCCAGGTAGGCCGGTATCGGGCATAGCCCACCCCACCCCGCGGGTCC
ACGACGCAGGCACGAGTGCAGTGGTAGCAGCGCACTCCGTCATAGAACCGGTCCACCACG
CCCGCAGTCCACTCCCAGCGCCGCCCGTCCCTCCGCCGCCGCCGCCGCCGCCGCCGGAGA
AGACCAAGATGGCCGAGAAGACGGCGGGCCCGGCCTCCAGGTCCAGGATCCGGGGCGGGC
TCGCCCCCTCCGCGCCCTCCTCCAGGTCCCATTGCCCTCGATCTGCATTTCCGCCCGGGG
CCCCGTTTGAAATTTCCTTCCGGGGTCTGCTCGGGCCGTCCTTGACTCTATTTTCCCCCC
GTGTTTCTCGGTGCAGGAGGGTGGTGTCGATGGCGTACACGGCGGCTCCGCATCAGGCCA
AGAAGGTGAGCGAGAGGAGAGGCCTCCTTGACCCCGCTCTAAATCTCCTTTTCAAGCAGC
TTTTAGCTTTCCGAATCGCTTCTTTGTCTAGCTCCGCAAATGCTGGGTTCTTGGGTGCTC
AAAGCCTGAGCCTGTCCTTGGAGGCGAGGAGCGTCGGCATTGTGCTCCTGCAAGGCCCGG
TGTGAATGGACACCAGCAGCAGGAAACTGTCCTGAAACAGTGCTCACTGCACCTGCCAAA
ACTAGATACGCGCGCTTGTTAGTGGTGGTTGTTACTGTTTGTACTGGTGGTTTTGATCTA
TGCCAACATCTACCACATGTGCAGGTTCCTGAGCCAAAGGTTGTCAAGCCAACCAGAACC
ACGCCCGCCAAGAGGCGGCAGCAGCCGGATCAGGGGCAGAAGCAGAGGGAAGAGCGCGCT
GCTCTGCAGGAGCAGCTCAGTGGCCTGCAAGACAAGCTGCTTGAGAAGGACGAAGCTCTG
CGGTCCGCGGAGAACTTGATTGGCAGGGTCAGTGCCGCGAACGAAGCGGTCGACGAATTG
AGAAGCCAGCTTAATGACAAGGAATCGCTGGTCGAATCTACTGGCTCCGAGTTGCATTGC
GCAAAGGTATACTGGACTCTCTTGGTACTTTTGGCACATCGCTGCAGTTTATATTTGTAG
AGCACTATTTTACTGCTTAACCAGTTACACGGCGCCTTCATTGAGGAAAAAACCATCCTA
GCACCACATTACTGCTTCATGTAAAATTTACACTGACGAAGATGATTGCTATTAGACACT
ACTCATTTAGACGACAAAGTTTGCCTCTCTTTCTTTTGTCTCTGCGCTGTATCTGTATGT
GTCCTCTGATATAAAAGGCGATGTGTCTTAAGTAATATCTCATTCGAAAACAATCAGAAA
ATGATGCAGTTACATATACAAGTGCACATCATGTTTTGTGAGCCTATAGTCATTCCACTT
TAGTTGCCCTGTCGTGTACCATCTGTTTTTGATTTGATTGAACTGAACTGAGGAAAGAAA
CTTAATATGCTGATTTGAGGTTCTACCTGCGCTGCTGCTCGGCATTCAATGCTAAGTAGA
AATGGCCATGCTTTCATGTATCTAACAAGGACAGACGGAACTATGGATTTTAAGCTTTAT
TTGCCTTTTTTTAGAAAACCTCATACATCTACTTGATTAGTAATATATGTTTCTCTCATT
GCGTTTCAGTACCATGCTAAAGATGCTTATGTGTCTTTAAGTCTCTTTTAATGTTGAACA
ATAGATTCTAAAGAAGAAGAAACGGAGCAAAATGCCAACACGATTCTTTCTATTTGAACT
AACCCGTACTGTCTACAGTGCTCGACGGGAGTATCGATTTTGCTACTTTCGGCTTGTGCA
TTCATGATTGTCTGTGTCACAAAAGACTTCCATGTCTTCTATCTCTGCATCATAAAAGTA
CAAACTCAGTGTAATCACTTCTTGAGTAATAGCACTGCTAAATACCCTTTGATTTTTTAT
TGTTGTTGCAGATCATGTTGGCAGAGAAGCAAGCAGCATTGGAGAAGTTGGAATGGGAGG
CAAAGATGTCAAGTACAAAAGTCGAGGAACTTAAAGTGGATGTAGCCTCTATGGATGTTG
AAATCTCTGCTCTGATGAAGGTATTCAGGAAAATAACAGAGAACAACCGAGCCTCTCATC
CCACGGACAGACCTGACGATTCATCGTTGGAATGCGAACCAATTCAGCTCGATGTAAGCT
CATGTATTTTTACATTTCCGTGAATTCCTCAGCACTTTTTTACATCTTGTGCTATAAAAA
TGTGAATCAATTATGTCTTTATCTAAAACTAATTTCTTAACTTGTTGATCCTCCTATTTG
CTACGAGGCAGGATACGGTAGGTGATATCGACACGGAGAAGATGGAGCAGGAAATGTCAG
CCTACGTCACGGCTCTAGCAGCCGCTAAAGACAATCCTACGGAGGAGTTCCTGAAGGCGG
TAACGGAGGCAAGACTGAGACTCCAAGCTTTTGTACTCTAACTTGGCTTGGAGACATTGA
CAATGCTCTGTGCCTAGAGCAGCTCTCGTGAGGCTCAGCGGTCACCGTGCTTCGCCTATG
ATATGATGTGCACGCGAATTGGCAGTTGTCGTCACTAGGTCTTGTATCGCAGAGGATCCG
TGTTTGTATCCTCTCATTTTGGATCTGAGCCGATGATGCCTCTGATCTCGTTGTTGTAAT
GTTATCCACTATGTTCAGTATATGACTGGGTGGCGTCTTAGTAGAGATGTCAACTTGTAT
AACTGTAGTGAACATCTAATGGTTCGACCTGTTTGGACGACCTAGAGATTATTGTTCTCA
ATGGTCTGAACATTTGCGACCCGATCAGGCTATTGTTTGGTTTCATGCACATGTTTGTGA
ATTTTATTGAACATCCACTGGTTCAACCTGTCCAAATGACCCAGAGATTTAGCCATGGAC
AGGGGGGGCCTCAAAGTTAGTTATACCCGTGGTAGAACCATGACTTGGTTTCGACATCTT
ATGAGTTTTAACTCTAGCTTACCCAACTTGTTTGGGACTGAAAGGCTTTGTTATTGTTGT
ATTGTATGTTCTCAAAACTTTCAGGCCATTGCTTTGGCATGTGCATGGAGTTTGATTTCG
GAGGGTAATAGCTCACAGAGCAGAGTCCTGGCAACCTCTGCGTACTGGTCGAAAAACAGC
CATACCAACCAAGCCCTAAATGTATTTTGGCTCTTATTTTGCCAGGTCATACAAACACAC
ATAGGTCACAGATAGCACACACAGTAGTTCAACATGTGCATTCTAGAGGTAAGAACATTG
TGCTGCCGTATTCACAAAACGTACTGTACAACATCTACCAAAAGAAACACAAACCTAGCA
ACATTTAGAAACTGCATGTGTACATTCCTAGCGTTATAGGCTGCTCCAAATCTACAGCCA
CAAGCACAACAACCAACATCTAGGTCAGTTAATCATTCACAGGCGGCATACAGGTGTACA
ACACAGCCACAAACCTAGAAAAAACAAACACTGCAGCTACCTCCAGGCAAGGACGAGCCA
CATGAATGTTGGATGTTGGATCACTTGTCCACCAGCAGCAGAGATAATTTTAAAAAAAAA
GGCAAAAGTAATAATACAAGGTTACAGACCAGTATCATCCTAATACATAGTAGACAGTAC
ATTATCGCACTCTCGGAGTGCTCTATCCTCGCATAATAAGTAAACAAAAGGAGTATTCAG
GGGAATCACAACACGTTTGACAGGTCTTTCCGGCAATATTATGCCACTCGCAAGTATATT
AAAGGTAGGGGCAGGTAGGCGTAGGCAGGCAGCAGCAACATCTTGTATCCGAGGAGGCTA
GAATCATGGCTTCACACTTATTCGAACTGCTTGTATGGCTGCAAGAGAGAAAGAGAGTAC
AAGAAGTCAGTACGTGGTAGCAGGCCAGCAGCAAAGGAATACAAATAGGTAAAAACTAAT
AATAGCACCAGAACATACAATACAGCATAACCTTAAAAACTACACCCTCTGTTCATTAAT
ATAAGACGTTTTGGCAGTTTAACAGAAGTGGTACTATCTTTTATACCACAGTTACCAGCA
TTTGAATATGAAAACTAATACATGAAGGCTGTGAACTTAATGGTGTTACAAGTAAATTTG
CTAAACTAAGTTATTAATGGCAAATAGAGCTAAGTAGAAATAAGCTACAGACTTGCAGCA
GGTACTAGATGCCGACAAAAAGTTTGTAGCCAACAAAAAATATTTTCAGACTATCTATGG
ATTTGTTGTAAAGAAAACTATGGACATATTTCAAAAAGAAGAATGTAAAATTATATCTAG
AAACATTTCATCTCAACACAAAGTACCTAAACATAAAATGATTAAACTAATACATTCAAC
CTCAATACAGGATAATAGTATTTGCTGTAAAATGTTTCTCCTTCACAGCCAAATAGGCAA
TGAAATAAGCAGGCTAATAAAAAGTAGCAGGGGCAACTCCACCGGTAGCATGATAATGCA
GTGAAAGTTACAGACTCGGTTCAAAAATCACAAAACTAGGAATGATCGGGCCACAATGTA
ATGGTCTAAATGGATGGAAACCATATAGCAGCTCACTACAGCCAAAAGGAAAGATACCGG
CATAAAAAAACTCTGACAATTGTTTAAGTACAGAAAGAATGCATAACAGTTCATATAGCC
TAAAACAATTCCTGAATAAGGAGATCAATATATGTATAGATCACTGAATAGAAAGGACTA
GCAGTCACCAATGTCGTCAAAATAAAATCATGTTTGATTTGATATTCTCCGTCAATGGAC
ACATAACAGGATGCATGAAGAAAAGAAAATATGCAGTGCTTACGTTTTCAAGACAAGCAT
ATATGTTCCTCACTAGATACTTGACATCTATTGGTGATAGCAGTCAAGTATACACGAATG
CATTTGCAAATTGGTGATAGCAGAAAACAAAAATATGTTGTTTTCTAGTATACACGAATG
CATTTGCAAATGATAATTATATTCAACTGAGAAGGAATCTTAGTTTGGTTCAGCCGCAGT
CATAGCATGATACTCATTTTAGTGAGTGCTAAGTCTACTTACCAGAATATAACATGTTAC
ATGAACATCCAACACGGGACAATAGTTCTTACACATGTGAAAGGGTGAAACATTCTCTAT
ATTCAGTAAAACTTAAGCTTTTATCAAGTACAGATAGGTCCTGGCATATAAGATATAACT
TCCCCAACTCTATGGTCTCACTTATGCTGGCTATTATGTTTCTACACCATAGATCGCTGG
AGCACTAGACTTCAAGCTTTGGAAATAAGTTATGCAGTGCAACTTGTCACCTCCAGACTT
TGCACTTGATTAATGTAAATGTGAAACTTTGGTACAAGTCACGCACTTCAACAAGTATGT
GTTCAATTATCTCAGTGTGCAAGAACATTGTTTCCAGCAAAGGACCTTTCGACTAATTGT
CAGAGCACCCATTGCGGAACAGGAATGACATAAGCAATTACAAGCTCCAAAACAATACAA
TTAGGTCTTTTTACAACTTATATTAACTTCAAGGCCTACTCTTGAGTACTTATCAAAATG
CTGGAGCATAAACACCACTGCTCATATTTGAAGAATACAGGGTGAGAGCCCTTACAGTTC
CTTTTTGAGAATACATCATATAAACAATAATTGGATTACAAGGAAGTTTTCTACAACAGC
TTATTTACAAGTTACAAATCTAAGTTACATTCTTGAGTTCCCAGCTTGAGCAATGCCTTA
AAGCTACAAAAGAATTAATGAAAAATCTATACAAAACAGCAACCAGAGCGTTATACAGAT
GGTATACAGTAGGTACACAAGTATATGCAGCTATACACAGTGATATCCAACGACAGGAAG
CTACGTACAGGTATACAACCAAATGAAAGAATGATTACACTCAAAACAAAAAACAAGAAC
AGATAAAGCAGAACTTACATCTCAGTTAATGCTACAACAGATCCCTGGAGACACAAAATC
CACCAGTTATAAGCAGTGAACGGTTGAAAGCCGGCATGTGCAAAAAATATGCCACCTCGG
ATTGCCACTGCCCCTACGCTAGGCATCCAGGTACATCACTCGTGCGACATTCGTCGCCGC
TTTGAGTGATCAACTTCCCTTGACCTGCTTCGTCTCCCAGATGACCTTCCTCTATCCCAG
TCTTCAGTACGATCAGAATCGCGCTCCCTGTGCCTGTGGTAATCACCATGGCGATCTCTG
TCATCCCGGTGTCTGTCCCTATCTCCTCTATCCCTCTCCCTTTCCCTATCTCCTCTGTCC
CTCTCCCTTTCCCTATCTCCTCCTCTGTCCCTCTCTCTTTCCCTCTCACGACCCATATCC
CTTTCATCACGGTGCCTTCTCTCTGGCAATTCTGGTGGTGGGGGCAAATCTTTTTCCCTC
TCCCGCCTCCTTTCAGGTGCACCTGACCATTCCCGCTCCGGTGGCCTCTCTTTACCATGG
CTAGCACCTTCTCCATAGTGCTGATCAGATGCTGCATCATCCCCATAGCTTGATTGTTCC
TCGCCTCCCCAACCACCACCCATGCTTGGGTCTGGCCACATTCCAACACCCCCTGCACCC
ATACCACCTCCTCTCCCAAAGAACGCTGGGTTCACATGAGGAGCAACCACAGGTGGGAAT
GGCTGCATCAAGCCTGGGAACGGTCCACCCCCAGGTCCACCAGGGAACCCTCCAAACCCT
CCACCCATCCTTCCCATGGCTGCACCATAACCAGTGGGATCAAATCCCTGCCCCATCATC
CCTCCGGGATGCATCATTGGTGGCGGTGGAGCCACCATCCCTCCGTTCCCCATGATCCCT
CGGCCACCCACCGGACCCATCCGATTCCTCATATTCCCACCAGGACCTCTACCCCCCATC
CCACCACCTGGACCTCTGCCCCAATTTCCGCCACCAGCTCCACCTCCTCCTCCGCCGCCG
CCACCACCACCAGCTCCTCCGCC