morexGenes - Barley RNA-seq Database

Contig contig_5944

Source Contig contig_5944

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_5944 (2862 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_5944

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71259	1	1497 bp	AK356633	Available	Available	None

CDS Structure of MLOC_71259

Contig Sequence (2862 bp)

>contig_5944 2862 assembly3_WGSMorex_rbca.fasta
CTCGATCCAGTCGTGGGAGGGGGGCGGGGGAGCGAACAGGTTTCCGAGTCTTTCCACGCT
CGAGCGCTCGGAAAGATTTCACGAGCGGGGTAGTGCGCGGCTGGCTCGCTCGGAATTGGG
CCAGTTTTTCATAGTCCAAATTATATACCACTCCAAACAACAGAATTTGGCCTTGCAATT
CCAGATTGCCAATTCCAAACGGTTTTTCCTACATCCAAACAGGGCGCAAGAGTATTTTAG
GCTCTGGGTAGCTACATAGCTACACTAATGTACAAAATATATATGGTAACAAAAAAGTAT
TTCCTCCGTCTCAAAATAAGTGAATCAAAAATGACTCAACTTTATATTAATTGAAATGGA
GGAAGTACATTTTTATGAGGTGCCTGGATTCCCCATGTCAGCAATTCAGCACTTGATAGG
CCGTCTAACAGTGCAGGTTATGCAGAGGGCGGGTAGGGTTTTCGTGCTGATGTACACCCT
CTGTTTCTAAATTTAAACTGCTAAAACGTCTTACATTTAGAAATAGAGGTGGTAGTGTAC
AAGCGTATTTACCCCAGAGCTTCCTGGAAAGAGCAGAAGAGCACACAATTTAAAAAAATA
GCCGCAGCTGAACATTTGGTGTTCCTTGGTGATATGCCCCATGCAAACTGTAGAAGATTA
CATAGTGTGGTTACTATATGAAAGTTTCAGCTACATGCCCTCCAAAATAAAAATCAGCTA
TGCGCCAGGACATTGCAATTCTGCTGAGAGTTACCACCATCAACATCATTTCGTATAAGA
TGGTCTGCTTATTGAACCGTTAGCGGTTCTCAGTCAGTATGACTAAGCAGTAGGGTTCAG
AATGTCGAAAACATAGGCCATGTGTTCAGCTTCCAAAAGCTGTCTGGGAATCCAAGAGAC
AAACCCTAACAATTGTTGAGACGACACGCAACACTAGCAACTATAGGTAGCACTCAGTCA
AATCTGAGATGAAGCATTGCCAAATCTTCAAGCTTCAGTACTCTCAAGTATGCATCTTGC
AAGACAGACCAAGGCTAGCCAGCAGAATGTTCAGGCTTTAGGTAAGACGATCAGCTATAG
ACTCTGACTAGAACCATCATATAGAGGTAGCAACAATAGAATAAGCTTACAGTGCGGGAA
GCGCATCATATCTAGCTAGAAGCATCATCTAGCATTGCCGAGGTTGCAACTATGCAAATG
CATCCTATGTGGTGAGAATAGGGGGCAGGTGTTTGGATTTGATTCCAAGCACCGGAGCCT
GCGTGTCGGGGAAGCACCTCGCACCGGGCAGCTCCGTCACCGTGCCGTCCTTTGTCACGG
CAACCGGGTAGGTGAGAAGGTGCCCAGGGAGGTCGTCGTTCAGTTCATCACTAGCATAGA
GGTCCCAGTACTTGTCAGCCATCTTGTTCACCCTCTGGACACACTCCAGGCTTCCCGGGC
TGACGAAATCGTTGTGCAGCATTCCAAGGTGCTCATACCACAGCGACATCCGGAAGCCAT
GGACCTGCCCTCTGGCAACCTGGCCTTTGGCGTTCAGGTGGTGTGGCTGGAATGCGCCCA
TGGCAATCTCGGAGTCCCTCCCCCCGTCCATTGACCGCTGGTTGATGTTGGCAGATCCGA
CGATGATGTACTCGTCATCAACTGGAAATCAAGCAGACTAAATGTTAAGGCAAATTTGAC
TTCGATCACATGAGACATGTCCTGACAGTTTATAGTAGGATGGACGTTACAATATCAGGT
ACATATATTTGTGACAACAAAAGCAGAGAACTGGAGTCTGGAAAACATGTTCTGTTGTAA
AATGAATCAAGTAAGAAATGATAAGGACAACTAATTCTAAGTATGCTTCGAAGATAGAAA
TGTTGGCAGACTGAAATGTCATGGAAGTGCATATAATCATCCTTTTCTACAAATAAATAA
ATGTAAGTGCACATAAGATGTTAATGACCGCAAGAACTTTCATGCGACGTGTGGAGTGGG
CATACCTATCATCATCTTGGAGTGAACATAGATCATGAACCGCCGAGCGTTTTGTGCCCT
TTCATAGGCTGACCCAGGCAATGGACGATCAGCGGGTTCATACTCCCCACTCCTCTTCAC
CTCCCTGTTCCCTAAGCAGAAGAAGGTGAGGTAATCCTTGGGGCTCGCGTCGATCCCCTT
CGCCTCAAGTGCGATGGCAATGTCATGGTACATCATGTCCATCGTCCTTCTCTGCCAATC
CAGTATTGCCTGCACAGATCCACCTTCAGGAGCACCTTCCGGCCACATTGGCACCACCAC
ATAGACCACAAAATGCTCACCAGCCTCAATCTTGCTCACAATCTTCAGCGAGAGCTCTCT
GGGAATCAGATGCAACGCCTCGATTTCCTCTGGCCTTATGTCGTCGGCCTTCCACGCGAA
TGAGCTGCCAAGGAAATACTGATTCTCAATGTAGATGAAGTGCTGTGCACGGCGTATCGC
ATGGATGTAGGCATCCTGTATGCTCCTGTCAAGGGTGTTGTTCTTGCCACTGACAAGGCC
TGATCGAGCAGCTTGCTCAGGGGTGTTAGGAAAGCCGAAGCTTGCGCCGCCGTCGATGGA
CCGGAAGACCTGCACATTCCACGCCTCCTGGTCATCGGGGAACGTAACGGTTGATGGCGG
TATGATCAGGTTCGCCAAGGCTTTCAGATCGACGAGGAGGTCATTGTCACCGCCTTGCTT
CCTCCACCTCTGCTCGAAGTTGTAGAGGATGTCCCACGCGGCCGGACCTTCGATCTTGGC
ATGGATGTCGTGCCATGGCTCCCTCGGCCCACCCTTGCTGATGGACGTGTCGACGAAATT
GGTTTGATGGAAGTCGTTGTGGTGCGCCGTGTCCAGCGTCCT