Contig Data
morexGenes
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Map Locations of contig_59410 (4807 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_59410

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71244 6 2136 bp MLOC_71244.3 Available Available LOC_Os05g07764.2, FRAME:-3, EVALUE:0.0, 13105.m00852 protein carboxyl-terminal proteinase, putative, expressed





CDS Structure of MLOC_71244






Contig Sequence (4807 bp)

>contig_59410 4807 assembly3_WGSMorex_rbca.fasta
GCAAGTCTGCTGAAAACAACGTTAGTACGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCAAGGGCAAAAGAGTTTGGAAAACAAGATACGACGGAGACGTATCTCTCACC
TCCGTGACAAGTTTGCCCTAAAGGGTTTGATGTGCTGCATTACTTCCTTGGCATCAAAGT
CATTAGGCGTGGTGATGGGTTCTTTCTACACGAGTAGAAGTACACCTCTGAGTTACTTGA
GCCCGTTTACATGCTTAAGTGCAAGCCCGCCTCCACGCCCGTCGACACGAAGGGCAAGGT
CGCTACACTAGAGGGTCTTACTGCGCCTCATGCTGCGTTTTACCGCTCCATGATCGGCAC
ATTGCAGTACTTGACACTCACAAGACCGGATCTGCAGTATGTTGTTCAGCATGTGTGCTT
ACATATAGACTCCCCACGTGACTCCCACTGGACTCTAGTGAAACATATTCTTTGGTACAT
ATTCAGCACCATGGGCATGGATCTCACCCTGACGGCTTCTGCCTCCAACGACATCGTCGC
CTACTCCAATGTTTACTGGTTTGGCTACCCTGACATGCGTCGTTCTACGTCCGGCTACTG
TATCTACCTCGGCTCCTCGTTGATTTCATGGTCGTCCAAGCGACAATCCACGATATCTCG
CTCGAGTGATGAGGCGGAGTACCGAGGAGTGGCCAATGCCGTTGCTGAGTACTCTTGGTT
AGATCAGTTGCTTTAGAGGTTGCTTTGTGAGGTTCAGAAGGCCACCATTCTCTACCGTGA
CAACGTCTATGCGGTCTATATCTCCGCCAACCATGTACATCATCGTTGGACAAAACACAT
TGACCTGGATATTCACTTTGTGCGCGAACGGGTTGCTCTTGGTCGCATACGTGTCCTACA
TGTCTTGACTGCGCAATAGTTTGTCGACGTGATGACCAAGGGTTGCCTATTTTTGTCTTC
GAGGAGTTCAGGTCCAGTCTTTGTGTCGCTGACAATGCTTCGACTATGGGGGTGTTGAAT
ATATATTTGATGGCATGTATAGATTGTTTATTGTACACCAAGACCACCTACTATTTCCTT
GTATAGGTTGCGGTAGAGACCCACATTGTACATTACATATACGTGCACATTGCACCAATC
AATGCATCGTACATTACCACAACTATTCACACGCCCAAACATGGCCGGCCGCCACATCCG
CAGCCAATGCCGTCACCCATGGCTGGGCCGCCCATCACCCATGGAGCCGCCGTCGCCCGT
GGCAGGGCCGACCACCACGCCGCCGCCAACCGCAGCCATCACCGGCACGCCGCAAAGACT
GGATGGGTCGCGCCTCCATACGTTTAGGGGCCTCGCATCACCCCTAAGACGCGGGAGAGA
GGGAGTCCCTGCCACCGCAGTCGGCCCTTGGGCTTAGTCCGACGATGACGAAGGGAAGGG
AGCAGGGAGTTCACACCCCGGTGATAGGGTTTGGGCGCCGTCCTAGTCACCCTACCCGTC
TGGTAGTGCAGTGTTAGATTATTTGATTGCTTGCAAATTCATTTGTTCTTTTGAAAGTGC
CATGACAGATTTGAGAGAGGTTATCCTCACAACAAGATGGTACATACGGCGGATTAAAAG
ACATAAAGTTAAGGGAGAAATGGTACAACCAATCCCACATGGAGTTATGTCAAATTCATA
TTTGATAGCAAATTGTACTCGATCCTCCAACAAACTACTCCCGTCATTTCTAAATAGAAG
TTTCTTAGATATTTTACTACGGATTACATACGAAATAAAATAAATAAATCTACATTCTAA
AATATGTTTATACACATTCGTACGTAGTGTTTGGTGAAATGTTTAAAAAGATTTATATTT
AGGACCAGAGGGAGTAGAATAGAGGAAGAAGAGTAGCTGGAGCAGAGCAAGGGAAGGCTT
TGTTTGGGTCAATGTGAATGCTTTTTTATGTTAAAGAAAACAAACAGGCATGCATGCAAA
TAAAAGTCTTTTGTGGTGTAGTACAGTATTAATTTTGCTGGAATTAGCATCTGTGGCGTG
AGTAAGCAGTATTGGTTCCGTCCTAGTCCTAGGGGCACCGGACGTTCCTGCCTGGACCGC
CGTAGTAAAAGTAGCTGCCCCACGCGCCGCCCTGGCCGCCGGCGATGTCGTAGCACCCCG
GGTGGTCGGCGAGGAGCCGGAGCCCTGCCGCCGGGATGAGGTTGTTGTCCCAGTCCACGA
CCTGCAAGTTGCGGAAATATGCCGCGCGGCCGTACCCTTCCCCCGGGAACCGGCCGCTGC
CCATCTGCGTGGGCGTGTGCGACCCCGAGGGCCGCGTGTTCACCGCCTCGCCACCGAACT
GCACCATGTCGGCGCCGCCGCGGCCGCGCGCGCCCAGGTGGGTGAAGAGGGAGGACGGCC
AGTACCCCACCAGCGCGCCCGACGGGCCCAGCTGCAGCCACCAGTTGCCCTTCTTGGGGT
CCTTCCAGATCATGAGCGTGATGTCGAACTGCCGGCCGCCGTAGGCCGACACCGGCGTGA
TGGCGGCGCCGATCACCACGCGGCCGTTGATCTGCACGAACCCCGCGCAGTGCAGGTTGT
AGCACCCCGTCTCCTGGTACGCGTCGCTCTGCATCGCATACATACATGGATTTTCATGGA
CAAACAGTTGAAGATGACTGAACTTTTAGACGACATCGTTTAGAGAGCTTACGGTCCAGT
AGGTGAAGAACCTCGGGCTGTTGTCCCCGTATAGCTCGGGGCTGACCTGCCACCCGGCCT
CGATGGTGTTGAGGTCGTTGCCGAAGGAGCCGGAGATGACCCAGATCTGGGACAGGCTGA
ACTCCGCCGGCGACGACACCTGCGCCGGCCACACGTTCAGGCTCGCCTTCGCGCCGTAGA
ACTGCCCGCCGGTCACGTACCCCACCGCGTGCTGCATACCACCACAATGACATTCAGTAT
CCGGTACACTAGTACAGTGGCCGTATCCTTTTGTCTGCATACGTGTCCAAATGACTGACT
GATACTCCTAAACAGAGACTGAATCGAAGGAGTGGTCATCATTGGCGGGGAGCCGGTGAC
TGACCTCATGGCCGTTGCTGGTGGAGTCCCGCCGCGCCGCGGCACTCTTGGGCTTCATCC
CGAACCTCCGAACGGAACTGGCCCTGAGCAGATCGCCCTCCGTCGTCCGCCTCACCGGTA
TGGTCCCCTTCGGGCACCACTCGCCGGAGCTCCTCCACGTCTGCGGCAAGACCTCCTCCT
CCTCGTCGTCTTCCACGGCGTCGGCATTCCCTGGCCTTGCCGCAGGTTCGTCCTGCAGCG
GCTCAACAACCATTAGCGATCACCTCAAGGGCATACGCGAGAACACGATGCACATTGCAG
CCGGTCAGTCACTGTCAGTCAATCAGAATTCAGAACAACACTAACGTACCTCTGGTCTCT
GGCCTCTGAGGCTGGGATGGTCGAACGCGGGCTGCAGGTGAGAGGGCACGCAGTCTATGA
CGTCGCCGTCAGGGCTCTGCGAAATGATCAAAACCAGTTACTACCTGGCAAAAAAGGGAC
AAATTTCACGTACGATGTGACGAACGAGAAGAATGTCTGGTGTACGTGCCTGGATCGTCT
TGACAGTGGCTTCCCTGACCCTGGCGAGCTGGGCCCTCATCCGCCGGAGCCCGAGCTGCT
CCTCGCCGAAGCGGAGCGCCGTCGTGCTGCCATTGCCATTGCCCGTCGTCGCGGAGGAGA
CGAGGGCGGGGAAGACGAGGAGGAAAGAGACGAAGGAGGCAATGATTGGGCAGCAGCAAG
AAGCCATCGACGAGCAGGGCTGCCCTGAGTTTCGTAGCAGCCTAGGATCAGAAGAAGAAG
AGGAAGAAGCTTAATACTCTTCCAAGGCGTCAGTCAGTATGTGCGCGCGCGCACCAGCAT
TGGCGCGGTTGTCTTCTTCCTACCGCCCTCGAGCTCGCTATAAATACACACAGGCATCCA
TAGATCACTAGATACACGGATGGATAGATACCTGGGAGTATGGCACCAAACGAACCAGCA
GTGAGACGGAATTATCAGCAGGTCATTTGGCCGACTCTGCGCTCCGGTGGGCGGCTGATT
TGGCTCACCAGCCTGCAGGCCTTTTTCTTCCGTGCGACGGACCAGCACAGCATAATTGTC
TCGAAATGAGCACCACGCGTAGCCATGCCCCCATCATTTTTTCCTAGCCGTATGCCCGCT
CCTGTCCCCTCTCCCACTCCACGCTGCTGCCTTTTGGTCTTTCCTTTAGTAGATCTCAGT
GGAGGCCAGCCCGGTGGCATGGCATGTAACTTTTCTTTGTGCTGCAGAACGATGGGTGCT
CCCCATGTGCCGAGAGATTTAGGCAGATCTGTGCAATGTCCAGAACACTGCTTGGTTAGG
CAGAACAGGTTTTACATCCTGTTACCTTTGAGCTCGGCAGTACAGACTGCGTAGTTCAGA
GGCACGATCGGGGTTACTGGATTCCAGGACACTTCATTACTTGTGTTGAAATTAGTAGCG
GGCCTTAGGCCCATAAGATAATTTCAAAAATCTCCAAAGGTCCATGTAGGTGAGGGCATG
ACAAGGTGGTGGTGAAAAGTTTAGTCCCACTCCGTTAGTGGAGAAAAAGTTTGATCCTTT
ATAAGGGTCTCTATTCTATATGCTATTGGAGAGTGAAAAGGGAAGAAGCCCTCGCGCACT
CCTCCCTCGCCGCCCGCCACGCCTCGTCACGACGTAGGTTGCGGGAATGAGCCGAGCTCC
CACGTCTCTCCACCCGGCCGCCTATATAAGTAGGGCTAACACCAACCCTAGCCATCACGA
GAATCAG