Contig Data
morexGenes
Links



Map Locations of contig_59314 (5443 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_59314

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71188 1 612 bp MLOC_71188.1 Available Available LOC_Os02g08180.1, FRAME:+2, EVALUE:3e-30, 13102.m00943 protein protein transport protein SEC61 subunit gamma, putative, expressed





CDS Structure of MLOC_71188






Contig Sequence (5443 bp)

>contig_59314 5443 assembly3_WGSMorex_rbca.fasta
GGAGGAATATCACTACCTGATGGCAGGGTCAAAACGAAAGCTACTCCATATAGCTAGCAT
GCTCTGTTTCTCAGAGCAGAAAGTTTGGGCCTCCGATGGTGCATAAAGTTTTAGCATGTC
AACTAAAGTTCAAAATACCAGAAACATTCAGTCCATAGGAAATTTGATTCAATGCCAAGG
CTATTTTTTTTTCTTTTAGATATTTACTGAAAGAGAACACCTTCCCTAGTGTCATAACTA
AGTGGTTCATAATTGAAAACGTACTGATAATCTGGTATGACTTACCCTGGTCCTGGTCCA
AGCTCTGCGATTCATGTTGAGATGAGTAGTGATAGCATACAAGTGAAGGAACAACGCCAG
CAAACACACCAGCGCAAACATCTCAGATCCCTTGGTTTGAACAGAATGGTACGCTGTGAC
GAACATCTTAAAACAGCTGACCGATTTTGCCACCAGCGAGAAATTGTCGAAGAATAACTC
GCCGGCATCATTACGCGCCGAATACATGAACCTGAAAGAAAATAAGAAAATATGCTGTAA
CTACCTCAAGGATATACACATGGACAAAAGCCAGAGCGGGCATAAAAGCTACGTGAAGAC
GTGAATGAAATCCGGTTCGCCAACATTTCTTTATCTTACGTCTGTTGGATGCAGAGCAGG
AGAACGGCCAAGTTCACGATGGTGTTCGTGGTCATACTGCAGACGGCGAAAGCTCCTGCA
TCCATTTCCTGCAGGTGTCTTGATCGCGGCCTTCTTCTGCAGATGTCGTTAGCGGTGGAG
AGCAGCACCGCCTGTCTTAGAACACGAGATTTGAAGCTCGAGCGACTGAAAATTACGAAG
AAACAGTTCGCCCGCGAAGGCGTCGGCCCCGGGTTTCTTTCGACCATCGGATGAGAAAGA
AAAGTCTCATCCGACAGATTAATGGAGAGCAACAACATGATCCATTGTAGCTACGATTCA
AGGCTGATAATTAGCAGTCGAAGAAAGTTTCGGAGCGTGCGTACCCGTGGTTCCGGATGA
AGGAGGAAGCGAGCAGCTTATCAAGTGGATGATGATATCGGCGATGGAACCCTTCTTCTG
CAGATAGATGTAGTTAGCAGGGGCTGCAGACAACCGAGAACAGCACGCCCTGCCGCAGAA
CACGCGCGATTTGAAGCTCGAGCGACGACTGAAAATGGCGAAGAAACCCGCCTGGTTTGC
TCCCTGGCTATCACGCGCTACGTGGTTCCTTGCTCTTGTCCCGCGCGGTTTGATTTGGAC
AGAAACCTGGCTCTTTGAAACGGGTTAGGATCCTCTGCAGTAGCATACCGTGCAGTACAG
TCAAACTCTTTGAAACCCGCCTAGTTGCCAACTATCGATATAAGATAGCGAGGAGGCAAC
TCTTTGAAACCTGGCTCGCTCGATTGACCGTCTGGTTTTCGATTGAGTTGTCGCGCATCA
CCGCAGGGGCTGTGAAGTGTGAACTCGCGGTGCTGGTGCCCATGTATGTGCTCGTTTGAG
GGCCTGAATCTGTTGTATGTGCCTCTAGATGCTCTAAGCCAGCACCACCAGCACTATCCC
AATGCCTTCTTCCCCGACCTCTGCATCGCCGTCTTTTCGCAAAAAAACATCTTTTCTGTT
GTTTTTCGTGACAAGCATGGTCGTGTCTTTCGGAATCGAAGGAAAAAAAGCATTTAATAT
TTTTTATTTCGCGAGAAGTACGGCTTTGCTTTCGCGAGAGGCATGGTCGTGCCTCTCGGA
AACAAAGAAAAAAAAAGCCTTTACTATTTTTTATTTCGCGAGAGACACGGTCGTGCCTCT
CATAAACGAAAAAAAATGTTTTCAGTTTTTCCCGTGAATGATACGGTTTTGTTTTCGCGA
GAGGCATGACTTTACCTTCGCAATAAGCACGGTCGTGTCTCTCGGAACGAAAAAAAAATA
TGTTTTTCTATTTTTCTCTATAACAAGAGGCACGGTTTTTTCGTCCGATTTTTTTCACGA
AACAAGTTCGTTAAAACCTATGAACATGAAAGCTAATTTTAAACATCTCAATGCGAGGAA
CTCAACAGTGAAAATAGTTCAAAAATTAGACGTACGGTTGAAGAAAATAAAACATTTTAA
AAATACAGAACAAGGAAAAAAATCCATAATTGTGACAAATGGCATACATGCAGTAAACCA
TTTGTCACAGGCTAAGAAGACATGAGTGATTTTTAAATAAAATACCCTTAATTAGTGATT
TCAAAGATCGGTTTTGATCTACGAATTGAAACAGTTTGAGACCGATTTGCACGTGTCCGG
ACTGAACAAAGACTAATCCATAATACCTATAGCCCAAACCCACACCAGATCGTGTATTAG
GGGCTCAGCCCATTAAAACCCATCCATAGATGGTCCAGCAAAGAAACCAAATTGAAACTG
CGGTCCCAGGTTCATACAAATACCACAAACCTAGGTGTTATAAACTCGTTTGACACCCGT
TCTGACCTGGTTGGCCCGCCTGTCAGAGCCGAGAGCAAGAGCGAGCGCGAATCAGAGCAC
ACGTGTCGGCCTCGCATTGGATGGACTACGTGGAGGCTGAGGACGGGCATTTCTCTCCGG
CGGTCGAACATTGACAATCTTTCCAGGCAGTTCACGCTTTTTCTTGTAGGGAAGAAAAGT
TTATAAAAGAAGCCATCGGCGACACCCACCCGCACAAATCCAAACAGCATCCTCCCGTCG
GCTTCCTCCCCCTCACGCGCGCGACCTCGTCGTCGTCGGCTCCGAGATCTCGCCGCGCCT
CGCCCGCCATGGACGCCGTCGACTCCGTCGTCGACCCCCTCCGCGAGTTCGCCAAGGACA
GCGTCCGCCTCGTCAAGCGCTGCCACAAGCCCGACCGCAAGGGTAAGGACGCCCCTCGCT
TCCCGATCCGGTTCGGTTTCCCTCTCTCGCCAGATCTGACGCTGATTCTGCGCGCGCAGA
GTTCACCAAGGTGGCCGCGCGGACGGCCATCGGGTTCGTCGTCATGGGGTTCGTCGGCTT
CTTCGTCAAGCTCATCTTCATCCCCATCAACAACATCATCGTCGGCTCCGGCTAGGGTAC
GCCCGCGTCTCTTCCGATCCCGTCTCCCTACTGCTTGCGCGGCTTAGGCTTGGATCCTGT
CTTCTCGTGCTGTTATCTGTCGGATCTGCGGTGCGCGCGTCTGCCCCTGTCGATTTTGCG
GCTAATTCAGTGATGTTGGACCTTGGGACTTCGAACTTGTTGGGTTTTAGGAGATCTTCT
TAGGATGTTCCTGCGATCCGAGCAATATTAGTAAGTTGGAAATTAGTAGATCCTTTTTCT
CCTCCAAATAAACCCGCCAATTTCCTACTCCCTCCATTTCTAAATATAAGTCTTTTTAGG
AATTTCATTAGGAGAGTACATACGGATGTATATAGACATATTTTAGAGTGTGGATTCATT
CATTTTGCTCCGTATGTAGTCCCTTAGTAAAATCTCTTAAAAGACTNNNNNTTAGGAACG
GAGGGAGTAGCTTGTAAGGAGGATTCGGATGAATTGAGGGTAATCAGCTGTGGAGAACTG
GTGGTTGACTGCTGACTTTTCAGTTTTTTTCACCATGTAAATCATCCCACAAGTGCGACC
GGACAAATTGAAATTCTGAATGAATTGTTTGTCAGAAGTCAACGGTCGTTTTTTTTTTAC
TTTAATATAATGTTTTAATTTGATAGTACTATCACGAAATTCAATCATCTTTGGGTCTGA
ATTTTGGTCCCAACAACTAGAAACAGTAGCTGTTTTAGTACTGTCAATTCGGATGAAGCA
ACTTTAGTTTGTAACAACAACCTGATCCACCTCGGATGACTCTACTTGGTTCCTTCATAT
ACTTCTTGCTTTCTCTGACACTGCTTGCTGCTGTGCACATCCTTGATTCATTATTGATGG
CTCTGTCGTATGGTCACTTCTCTATTTGGATCATTATTGTGTTCTAGATAAGCGTCACAT
TGAAGCCTTCTAAATGTGTAGCATGCTGTTCTGGAATAGAAAATCATGGGCAGGCTGTGC
CATTTTCGTGCTAATTTTCTCATTAGCAAACTTCATGTTCACATGTGAATGTAAGCAAGT
GTACTAATGCACCGTTCTGATCCTCCGCAGGTTGGAGGACAACAGGGATAGTGTGATGCC
GGCAGTTGAGCCTGCAGCGCCCAAAGTTTGTTCTGAAGTTGTTGTTAAAGACCTGTTTTC
TGAGAAATTGTCACCAGCTTAATCATCGTAATGAGTATAGATCTTAAAAGTAGCGAGTTA
TAAAGTTTATGTTTTGTCATAATTCCCTTGTGGGTGCAAAGGTAGATCGCTGATCGCAAG
TGATGAATCCTTAGTGAAACGCGCACCACCGGTCAACTAGTTGGGCCACACTCACGCCAT
TCTGAAGATAATTGAAATATGAAAAACGTAAGAATACATTGGTAACAGGAAAATGCTTAG
GAGCTCTTGGGCGCACGGAACCTGATGTGAATAGTAAAATAAAATAAGAAGTAGAACAAA
TAAAAGAAAAACTGGAAATTTGGTGTATCACACCTGGTCCATCATTATACTCGCGTGCTC
CTAAGTTTTATGAAGAAATGACACTCATGTAGTGGATGTTTTGTGCAAAACCACTGCATA
AGGATCGACCTCAAGTACATAACTACAAATAAGATCGACCTCAACTACATCACTTTAGTT
TAAGTTTTAGTTTTTTTGACTGATTCTCTCAGGATCTTGAGAATTGGATCTCTCCATAGC
TTCTTCCATAATCTTGAATTGAATCCATATTCTTTTGACAATCCTAGCTAGTTAGGATTG
TAAAAATATATATAGATACAAAGATTCTAAGAGAAGCTGTGTGGACGTTTGATTTTTAAG
ATTCTAGGACTATCGGTCAAAAAAATTGGGGCTAACACTCTCAACTCAAAAAAGCAAGAT
TCTAGGACAATCGGTCAAAAAATTTGGGGCTAACACTCTCAACTCAAAAAGCAAGATTCT
AGGACAATCGGTCAAAAAAATTGGGGCTAACACTCTCAACTTAAAAAGCAAGAAAAGGAA
AGTAAATGCGGCGTCCCTACTACTCTCTCTGTCACGATTGTATCTAATTTTTTCGCAATT
GCTCACACAATAACTGCACGACGTCTAATTATTTGAAAAGATAATACACAGTAACTCACA
TTACACGTCTAATTATTTGAAAAGATAATACACAGTAACTCACATTACACTCTCCAAGAG
CGGTGGTCTGGGCGCTTGCTGGCGATAGCCACGTCCCAGTTTTTTCTGTGCCGAGGCAGA
AAAAAACACTCTCCAAGAGCGGTGGTATGGGCGCTTGCTGGCGACCACGTCCCAGTTTTT
TATGTGCCGAGGCATCCTAAATAATACCTACCCTGGATAAAAAAAAGTTCCCTTCCTCCC
CCACGAAGAGAGGAAAACTCGCAGTCGTCTCTCTCCCGTCGCA