morexGenes - Barley RNA-seq Database

Contig contig_59252
Source Contig contig_59252
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_59252 (6193 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_59252

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71157	3	2895 bp	MLOC_71157.3	Available	Available	LOC_Os03g45730.1, FRAME:+3, EVALUE:0.0, 13103.m04916 protein DNA-binding protein-like, putative, expressed
CDS Structure of MLOC_71157

Contig Sequence (6193 bp)

>contig_59252 6193 assembly3_WGSMorex_rbca.fasta
TCCACGCCGGGACGCCTCCTTCCCCTCCGGCGGAATCGGCGGCCCGCTCCTCCCCCGGCG
CCACGCGACGCTCCCCCTGCTACCCGGCGTCCCCGTCCAAGCTCCGCGGCCGGCTTCTTC
CACCTCCGTCGACACCGCCAGGATCCGAGGGACTCGACTCCGCGCCGTCCGAGGGACTCG
ACTCCGCGCCGTCACCAAGGGACCAGCCGCCCGCCGCCGCCGTCCGCGTCGGATCGGGCC
CGATCTGTAACGCGACCCCGCTATTAGCGGCGCTCTCTGTACTATATCCGATTTTATCGA
TCGATCTGCGAGAAACTCTCCCCGGACCTCTCGTTAATTGCGTGTGTGTGTGTGCGCAAA
CTAGAGGCCCGAAGAGGAAAAAAGGCAGACTCGAATCGAACCGTCCGCCATGGGCGTCTT
GTATTACAAATATAAGAGTGCAAAGGAAACTTACCCTGTGCAGTTGCCATATTCTTTCAT
ATCTGTGTCTGAACTCAAGCAGCTCATCTTGACGAGCAACCGGCACGGCATCGGCCGTAG
CCGTGGCCGTGGCCCCCGGGAGGATATCGCCCTCTCCAACGCCCAGACCGGCGAAGGTTC
GTCTTGTTCCACGCCGAGTGGATTTATTTAGCTAGCTCTTGGTTTAGGTTAGTCTGTTGT
AAGGCAGCATTCGATCTTGTAAAGCTTCGTTTACAGCTTGAATTGTTTGTTAAAATCACG
CTGTATGATCTATGTGTTTTGCTTTTTGAGAACTGTATATGATCCTGCGAATCTGTATCG
TGACGAGTGGTGTTAGCTTTATTGCCAGGATCAATTCAGCTTGGTGCCTCTCAGGTCCAT
CATTGTGGGATTTTTTATTATTTCCGTTGTGGCGTTTAGGTTAAGATCTTATTTGCTAGG
CATATCACCTAATTTATAATGAATTGCATCCATCAAGTAAATTGTTTGAGTGTTGATACG
TAGCCAAAATACCAGAATAAGTGATATTTAAGTCCACTAGAAATTGCTCCCACTAGAGTT
AAGATCAGCCAATTTAGTTGCTAGGGGGACCTGGACGCCCTGCAAGATGCACATTTTTAC
GTGAGTGAAATCTAGAGATGCATGATGCATCCATCTGTTCAAGGATTCCTCTCTGCTCAT
CATATATTGTAGTTTAGGTGTGGGGTTTAAGTGCATAACTGAACTTTAGCTTCAAGCAAG
CAAAGCAGTGATGGATATTTGATGTTGCTCTGGACAAAGCCTATACCTTTTTGGTTGATC
AGTGGTTTTAATGTGACTCGTTTCTGTAGTAATGCTGATTCAGCTTGTTTATCTTCTTTG
TGGTGCACTTGTACTGTTTATGTACATATATAATCGTACATTGATGGTCAGTTCTGCTAT
GGTTGTGTTCGCGTAACTGTTGTGCGAATTGTGCACCCCTTTAGCATGGTGGTAAATATT
AATATGTGTCCTGCTGTACTGAAATTTGCTTATGTACCATGACTGTAATGGAGGTCTCTT
CATGATGTACTAGGACATATTGTTGTTTTAGTTGAAGGGCTGCTGTACTCGTTCTCTAGC
ATGTCCTTGTGATATGCTTCTCTAGCACGAGAGATCCCCTGTACTATGGATAGTTCAATT
TGCATATAGTGATTGCGAGTAATCCTTTTATATTTTCCCAACCTGCACATCTCAGTAGCT
CGCAGTTTCCCAGTTTTGTGAACGTAAATTAACTTGTTATTTTGATTGTTGTGATGTCAT
CTGAAGATCTTAGTTTCAATTTAAACATGCTAGTGTTGCTATTTAATTGCATATTTTGGT
TATACTGGAGAAGATGTTATTTCATGCTTAAAAGCTAGAAGGGTATTTTAGTGTAATGCT
TTGACATTTTGTTTTGTGTTCTTATTCTTGAATGCAGAATATGCAGATGAAAATGCAATG
ATACCACAGAATGTAACTGTGCTGGTCCGCCGAACTGCTGGGCAAGAGTCAGAGAATATC
GTTGTAATATCCTCGTAAGTCACTATATCCCTGTCTGTACATATAGCTTGGGAAGGGGGG
GGGGGTATTCATAGTAGGAAATTTAATGGATGGAACTGAGATTACATGTGAAATTTGCCG
CCTTTAACTTTGTTGATTGACTATCTTCTATGTGTAGACGTATCTTACGGTCTTAACAAC
AAGTGTTTGTAATATAAAATAGAGACTGATGAAGGCACTCTCTCTTCCATTCTGCCTGTT
TCCTTCAAAGAACGAACCAAAATGACATGCATATTGTTTTACATTAGATGTTATATATGC
CTCTCTTTCTCTCGACAGATTTTGACTGATGGCTAAGGAGATGCTCTTTTTCATATACTA
ATATTATACCACTAATTGCAGGCGGAAAGTTATAGAAGATGGTTCTATAGCTTCAAACAG
ATCAGTGGTTACTGAATCAGTCTCAAAATCTTGTTCCTCCGCAGAAATGAAAGATGAAGA
TGCTGCAATCGCAGCTGTGATTGATGCAGCTGAACTTAAATGGTTAGAACACAACATTTC
CTTCTCGCATAAGTTAGCAGCTAGATTTTCTGATGATCATATTTAATGGTGCATGTAGGG
AGGAGCAGTCATTTAAGAGAGGACAAGCTCCTGGAAGGTTTATATCAGGGCGCCAGAATG
GTAATGCAGAAATTCCGTGTCTTCAGTGTCATATTCTTTTTAGTTATCATTATGCTAGCA
GATAATCTGAAAAGATTCTCGTAAAAATCGAAGCCATTGTTATGATGAAAAAGGGTGTGT
AGGTGTTCTAGCTTTGCTTTGCAGACACCAGATATCTTTTCTTTTTGGTACGGTAGACCA
TGTTTTACTTGTAACTTTTTTGACAGTAACTAGACAATTGTTTTGTGAATATGTGAAATA
TACTGCGGCGCAGTATGCTTGCCTTGTTCTGTGAATGTGTTCAGAATACTGTTTAACATG
TGCTCTGTTTGACAAATCTTTCAAATTGAAGGCCATGGATCATCAGAGAGGGAGGCACCT
CCACCAGGCTACGTGTGCCGCAGCTGTGGAGTTGCAGGCCATTTCATTCAACATTGCCCA
CAGGAAAACCAGACACCTCCACCTGGCTATACCTGCTACAGATGCCGGATTCCAGGGCAT
TTTATTCAGCATTGCCCAACTATTGGCGATTCTAAATTTGACAACTACAAAATGTCTCGT
CCTGTTGCCCCTGTCGTACCGCTGAATCCTGTTGATGGCATCCTATCTGCACTTGCCCCA
GCTGCATCTGTGAGTGAAGTTGATGACTTACCAGCAGAACTCCACTGCCAACTATGTAAT
AAGGTGATGGCAGATGCGGTTTTAACAAGCAAGTGCTGCTTCGTCAGTTTCTGTGATAAA
TGTAAGCTGTCTTCTTATACCCGGTCTGTTTCTTTAGATGTCTTGCTCTGTGGTGAACCA
ATGTTCAGATATTCGAAGCGTGCCTGTGCTCCAACTTTGTTTTAGTTCTTCAGTTGTACC
ATCATTTTCATGAGTTTATGCTGCTTTAAATTGAATTAGGAATAACCGTTGGTTTCCCCC
CTCAGGTATTCGAGATTACATTATTACACAATCGAAGTGCATTTGTGGAGTGAAGGTACT
TGCAGATTCCCTCATCCCAAATCCCACAGTTAGAAGCACAATCAGCAATTTGTTAGGAAC
AAGGACTTGCAGCACTGCCAGCGGTACAGGGAAGCACAGAAGTTCTTCAGGAAGCAACGC
TGATCCCAAATCACAGAGCCACACCACCTCGGCTGCTTTGGAAAGGGACACGAAGCAATG
TTTGGACAGCCAGCTATCGCCAGCTGCTTCTGACGCCCGCCTCCAGGTCGCCACAGAACA
TGATCAAGTCGACCGGCCTCAGAAGAATTCTGATCTGAAGAGCAACACTGAAGGCTCTGC
AGGGCGTTCAGCAGAGAAAGCTGTACCTAGCGCTGACCTCCCCAAGCCAAAGGATGTAAG
CGAATCAACATTAAAGGGCACTGCAATTTCATCAGGGACCTTGGAACCAAAAGTTGCTAG
GTCTGATCAGTTGAAGAAGAAGCGGAAGAAGGCAGACTCATCTAAGGCTGTTCACCCAAA
CAATGCTGACTATGGTTACAACGTTCCATTTGATCCTTCATATTGTAACCCTTTCAATGG
TGGATATGTCATGGGTCCATTTGGTGTACCTGAACCATACATGTACGGCTCAATGGGCAT
GCCCTATGGTGGTTTCCCGATGGGTCCATTTGGTATGAATCCCTTCGGCAATATTCCGCC
TCAGGCTCTTGCCATGCAAGGCTATCCACCAAACTATCAAAGGTGTGTGTATTATCAGTT
ACAAACCTTGCTTCTTCATTTCTATCTACCTATGGAAATGAACTGTAGTCATTGTATCTC
CTTTTCCATTTGAGTTTGAATACTAAGTATTTCATGTATTTCCTCTTAGCTGGGAAACCC
AGGCTGCAGTACACCGTGATGCCGAAGCTGCTGCACGCGCAAGGCAGGTCTCCCATGGGA
ACGCGGATGCTGCTGTGCGTTCAAGGCAGACCGAGAGGCCAAAGGACTCTGGTGCTTGGC
CCAGGCCATCAGAACGTAACCAGCGCATGGGTTCTCCTCAAGGCAGAGAGTTGAGGGACA
GGCCCCAGTCGAGACCTGAACCATCAGAGCGCAACCAGCGCTTGGGTTCTCCTCGTGGCA
GAGAGTCCAGGGAGAGGTCTCGGTCTAGATCTAAGCCATCAGAGCGCAGCCAGCGCTCGG
GTTCTCCTCGTGGCAGAGAGTCGAGGGACAGGTCCCAGTCAAGGCCGGCGAGGAGTAGGG
ACCATGGGCGTAACGACAGAGGTTCCAGTGACTACCACGAGGATCACCACGACAGGAAGA
GAATGCGCGCGTCTTCTACAGTTGATGGTGATACAGATAGCAGCCAGAGGTCCAAACACA
GTTCTAGGAGCCTCAGGCGTGACGATGGAAGCGACGATGAGCAGAATTTCAAGAGGAAGT
GGGGACGATGATCGCCGGTTGCCATGGATGGATACAAGGTTCTGAATAAAGATGGAGGAC
TTGTTGCAGCATTGCTGATGAGACTTGTTTTACCAGTGATTATATATGTCTCGGAAAGCG
GAGGACAATTCCTCTTGCAGAATGTTAAACCATTTGTTATACCGGAGATTGTAATATATG
AGAGTTCCCAGATCTCTTCCTTTGTAATGCAATGTTACCAAGATAAATGATATTATCATT
GGATTGAAATGTGTGTCTTCCTCTTATATTTTGTTATTTGATCGTTTACATGTGACCTAA
AGCCATCTAAATATGAGAAACAAATTAAACTGTGAATGGTGTGTGTTGTTTTGTTTCTTG
AATCCAATTTGGCTCCCAGGAACATGCTCATGCATGCCAAAATTATATTTTCAATCAAAT
GTTTCTTTTTAAATATATGCATGACCACATCCAAATGCTACCCATACATTTTTAGCACCA
GCGAAAAAAGGGAGAAAGTAAAACACCAAAATTACCTCAAGTGTAATTTTTAATTATGTT
TCACATAAAAGTTATCAAGGACGCTTGCTATCTTTTTGACTTAAACATCTATAAAAAAAC
ATATCAGATTCTTAATATATACTTACCATTTGTTCTGAACTCATATGCTTCTAGAGTAAA
AAACAACCCTTAAGATAATGTGGGAAATGTAGTAAAAAAGGAGAAGAAAAATCGTCATGC
GAATCAAGACCCATAAACACTATGAAGATGCAAATGAGATTAGATTAGATTTTCTCAACA
AAAAAGAGATTAGATAGATTGAAGAAAACTTGATCTAGATCGTTGGTGCAGATTCCTGCA
GCTACGATTAAACCTCCCAACTGCTTAGAATCAATTCCCTTGAAAAAAGTCAAGCACACG
ACCTCTCTGAAGTCAACGATCCGATAGGGCATCGCCGTCAAGAGCTAAGCGGTGTCTAAG
AAGGACATGGATTAGTCTCACAACGTAGGAAGTGGAGAGAACTAGCGAGAGATGGGACAA
CCTCCACGCAAGATGAGATGCGTTGGAGGGGGCTGCCCCTCCACTATTTATAGGCACAAG
GGGAGAGGTGGGCGCCATGGAGGAGGGGCTGCCACCTCCTAGGTCGGCCACACCAGGTGA
GGTCCCACCCAAAACCCTGGTCGCCCCAAGTGGCTTGGCCACGTTGTGTGTGCCGCGCGG
GGGGGGGGGGGGG