Map Locations of contig_5925 (9652 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_5925

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71153 12 2730 bp None Available Available None
MLOC_71156 2 1129 bp AK367248 Available Available None
MLOC_71155 2 5363 bp MLOC_71155.1 Available Available LOC_Os03g24844.1, FRAME:-1, EVALUE:4e-80, 13103.m02926 protein expressed protein
MLOC_71154 1 466 bp MLOC_71154.1 Available Available None





CDS Structure of MLOC_71153






CDS Structure of MLOC_71156






CDS Structure of MLOC_71155






CDS Structure of MLOC_71154






Contig Sequence (9652 bp)

>contig_5925 9652 assembly3_WGSMorex_rbca.fasta
AGGCCGGGCTCAGGCCGGAGAGGGCGCGGAGGAGGGGTCGCTGCAGATGGTCCTGCTCAG
CACCGCGGTGGCCGTGTGCGGTTCCTTGGAGTTCGGCACCTGTGTAAGCCTGCTGCAGCC
GCTCGCTCCATCTCCATGCCACAGCTTGCTTCGCTTCCGATGTGGCTATGATCGAGTCGA
GTGTATGGAATGCAGGTTGGGTATTCTGCGCCGGCTCAAGCTGGAATTGTCAGCGACATT
GGACTGTCAAATTCACAGGTTGGTTGGCTGTAGATTGCCCACTCCTCCCGTAAAAACGTT
TAGATCACTCACCATTTATGATTGGTAATCAACAGTCAAAACACTTCACTTTTATTTATA
ATGAAAACGAAAATGGTTCAGGCCGGCACAAGCCCGCCGTAGCACCGTCAAAGAAGGAAC
TTTACTTTGTATGTTGTTTTTGGAAATGCTTGCTGAGGCAAGTGCAGGGCCTCTGCCATT
TCATATAAAAAAAGGAGAGTTGCCTAGTTAACTGAGGGAAACTGGACGAAAACCAAATTA
CAAACACTCAAGGGGCAACAGGAAAATTAGAGTTTGGGGGTAGGGTTTAGACGAAACTAG
GCGAGGGCAGGAGCTCTGCCATTTCACTTGGTATTGGAACTGAAGAAAGATATTGTTTGT
TTGTAACAAAAGGCGATCAGGGAGCACCTCCTCTGTTCCATCAATCGTAATGAAACCACC
ATACATACAACATATACAAAAGATGTCCAGATCAACTCCAAGTTACAACCAGGCAAAGTA
TCAAGGCAAGAAACACAGGGAATGCACTGCACCCAGGAAGCAAACTGAAAACAAACATCG
CAACTAAAAAGTAGTACTCCCTTCGCCCCAAAATAAGTGTCGTGAATTTAATATTTAGTA
TAAATTCAGTACTAAAACAGCGACACTTATTTTGGGACAGAGGGAGTACTACGTAACAAC
CAACGAGTTTAGAAAGCAAGACCAGGCGAGGCTCTCTTGTAGCCGGAACTTAGACCTTCT
TGGCTTTCTTCAAGCTTCCAAACGGCAGGAATGAAAACAGGTTGAACCCCTCTAAACTTA
ATAATATTATGTAATGAACCAGTAGAGTACCGACCTTTGTTCACCAGCTGCCAAACCAGA
GAGTCAACATCAGGGCTAAAATTAACACTATTGGCTACCTCTACCAGTTCATACCACTTC
TACATCATGGCTGGTGAGAAAGATCTCCTAAATGTGAGTTTTAAGTTGAGATCCATCCCA
GGCAGCCTCGACACTTGTGTTTTTTCATTGCAGAATGCAGATAAGATACAAATCCCAAAA
TTGTACTGCTAGGGGTGATGAACCAAACCAAGTATCTGCCCAAAAATCTCACTTTGGCCT
CATCACCAATAACCCATTTATAAAAGACAAGTATTCACAGTAGAGTTAGTAAAGATATTT
TGGCGAGTTAGTACTGTATTTGCTGTCACTGCTCTGTTAGATCCCGATGGTCATGGTCTT
CATTGCTTTCATTCAGTAGACTAGTTGCGATTGATGATCATCCTTCCTTGTAGTATGGTA
TCTTTGGATCAGTCTTGGCGGTTGGCGCAATGATCGGCGCTCTAACCAGTGGCCGCCTTG
CAGACACTCTTGGGCGCAAAATGGTGAATTACTTCACTTGAATCATACTCGACTTGATGA
CTGGGATGACAATATCTGTGCCATTTGCCTTTGCTACAGACCATGCGCCTGGCAGCAATT
GTTGGCATTTTTGGTTGGCTTGCTATATACCTAGCCAAGGTATATATATATATATAATCC
TTGCTCCATGAGCTAATTTCGTTTACAGACATAGTCTGTGGTTTCAAGAGCTTGAAAGAC
CACATTCATCATGACATGAAGGATGCAACGACGCTCTACTTGGGACGGGTCTTGCTGGGC
TACTGCACGGGGGTCCTTTCTTATGTGGTGAGCATCTCTTGACTCTCAATATGCACCTGA
CTTGTCATGCTGTTTTGATTAAAAAAAAACATAGCATTCTAGTGCCCTAATAATACCCAC
ACGTACAGGTACCTGTGTTCATATCTGAAATAGCACCAAAGGATCTCCGAGGAGGCCTTG
CAGCCTCAAACCAGGTTGGAGAGAGCCTCACAGGCTCTTCTTAATGTACGTGCACAAAAA
ATTAGAAAAGGTTGGAAATTAACGTAGTTTCATCTGTAAGTGCAGTTGTTTATTTGTTCA
GGGTGTTCAGCTGCCTACATCATCGGAGCAACGGTTTCGTGGCGATCTTTGGTTATTGTG
GGTAATGAATAATATCCATTATTATCTTATCTGCATATGGATGGTCGCATGTCCATTATC
CAAGAGAAATCAAAACAGCATTTGCATGTTTGTGCAGGATTAGTGCCTTGTGCATTCCTC
CTCGTGGGTCTTCCCTTCATTCCCGAGTCTCCAAGGTGGCTGGTATGGTTGTAACTACTA
ACTTGGGAAACACATGAGAAAATATGCAGCCCAATAATCGAATGATAAACAGAACCTACC
TAATGAATAGCTAACCTTCACTGAAGTTATCCCTAAAAAAACTTCTACTGAAGTTATGGA
TTTCTCATAGTAGGCTTTCGTTGTGAAGTTCTTTCTTCAACAATCTGACAGGCCAACATC
AGGAGAGAGAAAGAATTCCGTACTTCGCTACAAAAGCTTAGGGGTGAAAAAGCTGACATA
TCTGGAGAGGCTACTGCAATTACAGTTAATTTCTACCCTGATTTAACATATAATTTGGGG
AAGAGGATATTCCAGTATCTTATTCTTATGCAGGAGTACATCGAATCAGTTCAGGATTTA
CCTAAGGCTAGGATTCAAGATTTGTTTCACAGCAAAAATATGTATGCAGTCATTGTAAGA
ACCAAAAATTTCATTGACCTACTTTATTCCCAACAGATGTTATTCTTCATCATCCTGAAA
GAAGCTCAGAACTGATGATGTAACATGTCGTTTTTCAAATAGATAAAAAAAGTTAGTTCA
GAGATGATCATAAATATAGCTTTGATTTGATACACAGGTGGGTGTCGGCCTGATGGTCTT
TCAGCAGCTGGGAGGAATAAACGCGTTAGGCTTCTATACAAGCTATATCTTTTCATCTGC
AGGTATCCAAATGCTACCTAATCAATTATGCCATTTTACTGACGAGAGGAACTTTATGTG
ATTATTCTTCCCCTAAACTTCAGGGTTTTCTGGTAAACTTGGTACCACCTTGATAGGCAT
TATTCAGGTTGAGGATAAACTATTCTCGTCGGTAACTGTAACTGGCTTACTGGCTGTATA
ATTTCCACAACTATAATAATTTCAGATTCCAATCACATTATTCGGGGCCCTTCTCATGGA
TAGGAGTGGAAGGAGAACCCTTCTACTGGTATGGATACTCCAAAACTGAGCTGATGCACT
TAAACTAAAAAGAAAGCTTCATTTTTCTTTTATATTTTTTCTTTTAATTAGGTGTCTTCA
TTTGGCACATTTGTGGGCTGCTTTCTTACTGGGCTGTCATTCTACTTTAAGGTAACCGTA
AACTTGCTTATTCTATGGGGCATTCCAACTCAAATTCTGAACTGGAAATCATTTATTGAT
TATTCTCAAACAAATCATTTATTGATGGTAAGTTACTAACATAACCCATTGGGAAATTTC
AGGAAGAAACTTGTCACGGTTTGTAGAAGTTCTGGCTGGTCCTTTTTCTCTTTAATTTTG
TCTCCTTCAACATAAGTTGATTTGTTTATCACCTAGCTCATATTTTCTCAAACCGTGTCA
ATGGCAATGCGGACATTTGAAATTTAACTATCTGATAATAGTAGTTCCTGAATGCAAAAT
ATAAGGTAACCACAGTTATTAAAGTTCCCAGCTAGTACGGAGTATTTGGCAATCAGACAA
ACATTACCAAACTGCACAAGCACCGACTTCCATGTATGAGGCTCTATCAAATAAACATGA
TTGAAGGGTGAAATATCAACAGATCAAGCAGATCAAATCAACAAAAATAAATAGTTGAAT
AAACATGACCTGAATTTACAATTCAGAATGTTCGGCATCTATCACTATATGGTAAGCAGA
GTATTGACTTTCTGTCTTTTCATGATCACAGGCACAAGGATTGTACACACAACTGGGTCC
TACACTGGCTCTTTACGGCATACTGGTACACAAACTACATAACTAAAACAACAATAATTT
TGTGTAATCCCACTGTTGAAATGAAAAATTGTTCGCATAGTTCATGACCACCTAGCCGTC
TAAGATGGGCAAATTTTTCTGGCACGACATGTTCGAACTCCAGAAATGTAAATTTTGACT
CCTTACTGAATAGGCATACTATGGGGCATACTCAATTGGAATGGGACCTGTTCCTTGGGT
TATCATGTCCGAGGTATGATATATCACCATGAATTAATTAGGGATGAGGCTCAAGTTCCT
GGTAATCTGTATGGAACTCATGTTTGTAACTGATGACATCTCTCCTTGTTTATTGGCAAA
GATATTCTCAATCGACATGAAAGGAATAGCTGGAAGCTTGGTAACCCTGGTTAGTTGGAT
TGGTTCGTTCGCGATATCCTATTCATTCAGCTTCCTTATGGATTGGAACTCTGCAGGTAA
CCATGTTCAACCCTTGCATTAGTAGGACAGTTGAAAAGAAAGTAGAATATCCACCATTAC
CCGTTCATGTGATAGCCGAATAATATCCATTCTCCAGTAAATGTTTTTGCTTGAGCTTGT
TTTTATTTCTACGTGTAGGCACATTTTTCTTGTTCTCAGCAACAAGCCTGGTTACTGTGT
TGTTCGTGGCAAGGCTAGTGCCAGAAACTAAAGGGAGAACACTCGAAGAGATCCAAGAAT
CGCTAATGGCCAGCACATGACAGGTTAAGAGGGAGGACTATGTATGGCTGGCACGGCCAT
TACAAATTTATGACTACAGATCTGAGAAAAAGAACTGATATCTTTGCATTGTAAATTCCC
ATGTAACTATTGTTAATCATTAGATTGCTTGGCCATGAGTGTCGAACTATCAATCAATTC
CAGACAGATCTGTGTCAGATGATCTCATTTGGTTCAGTTGTGAGTTGTGACCGAAAATTC
ACCATGATATCCTGACCGACATGCTTTGCTACATGGCAGAGTGCCCGTATTGGTTGAATG
TCATTGGAACAATGAAGCAGATTGCATGCTTGTGTGAGTTCATGTGCTTTTTGCTCGGCT
ATATATCCAAGTATTTCACACAAAGAATTTAAAAGAAAGAGCCAAAAGATGTAATCATTC
AGAACCAAACTTAGAATGACGTACACTAGGCTGTTACCATCAGAATTTGACAGCACAGCA
GCAGCAAAGAACAAACCTGACTCTGAGCAGAACAGGATTCTAAACAAAGAACAAACCCAA
CCCTGAGCAGAACAGGATTTTACACTTAAACGTAGACTCGTTCATAGGTGAGAATTAGGT
ACCAGTATTTGTGTTGCGGTTTTCAACTGCTTGGGTGAGTGATGTACTCTAAACTCCGCA
ATCAATCAGGTACCGGTATTTGCGGTATCCAACAATTTAACTTGGTTCATGCTTGCCTCG
TGCTTACTACTTTCCTCCCTTATGACCCGCTTGAAGTTTCCAAGCTCAGGAGAGTCCTGA
CCATACACCATCTTGATGTTATCCACACAAGCACTGCAAATGACAGGCATCAGATAAATC
AACTCAGCATCGTGAATAACTAACAACGTAGAGAACGAACGAGAACACAAGAGCCAGCAA
ACCTGCAGGCTTCCCTGTCGAATTTGTTGCGCGGCACGCCAAAGAAGTCTTCGAAAACCT
TCGGTTCGACCCTGCAGAAGAATGGCCGGTCTACAACATCCCAAAAAGCAGCCATAACAG
CATCATCAGTTTGCTTACACATGTGCGCTGCGCTGAAGACTAAAACACGGCTCGTTCTGT
AAAGAAACGAGTACCTTGGTAGATGTTGCAGGTTCTGTTGGACTTGTCGTAGTTGGTGCA
CCATCCATCAGGGCCAATCATGCTCTTGTACAGCTGCGACCATGATCAGCAATTCAGCAT
GCTCCATGATATCAACCGAAATTTTGCATCTATCTATCAAACAAGAAACAACAACCAGTC
TTTTTGCAGTAGTACATATGTTGATAGATACAGCAGAAATGTTGCCGCTGTTGGTACTGA
AGTCTACCTACCTGGAGGTGGTCGGGGTAGTCGGCGAAGACCTCGTCGGGGGTGGGGAAC
TCGGGGCCCTTGTCGAGCTTGCAGCACGCGCCGCACCCCGTCGCGCACCGCCACCGCACC
ACCCGCTTCGGCTTCTCCCCGGCCGGCGGCTGCTTCCTCAGCTCAATCTCCTGGCCCTGA
CCCGATGGCCCTTGCGCCTCTTCTTCCTCCACCGGGCGAGCCTTCCTGTCCCTGGCCGGC
CTCGCGTTGGCCTTCTTGTTGCTGGCGATCTCAGAGGGCTGGGGCTTGGCCTCGCCCCGC
CGCTGGCCCTTCCTCCTCTTCCCACCCGATGGTGGTGGTCCTGACGAGGAGGACGAGAGG
CCGGCGACGGCGACGGGCAGGAGGCCGGGTCTCCTCCTGGCGCCGGCGGCGACCGTGGAC
GCCGCCCTCGCGGTGGCGGCCCGCAACATGAGCATCCTCTCTCCTCTGCTTCAACACAAG
AACCTCGCTTATCCCCTTCCACGCAAGTTGGCTTGACTACGCCCTGCGGCTGGGCTCGGG
CATCCCAATTCGATCATGTCTAGGCCCACCGTGCCTCGCTGTTTTCAGCCCAATTTGTCT
TTTTTTTTACCATAACTGATACACTGAATTCTTCTAAAAAAATCACTGAATTTGTCTAAA
AAAAAAAGTGACCCACTGAGTCCCCAAGTGAAGATTTTGAAGCTACTCCTATTGGCGTTC
AGCGATGATGTTGGACGCGATCAGCGATGATGTTGGACGCCGAGTGTGGCTGTCAATTCC
TCCTATATGCGTTTGTATGATTGTATCCGGACGAACATTGATTTTTTCAGGAGAGCTGGG
TAATTCTCAGAAAATAAAATGTAGTCACATCTCCTCTCCAATTGGTCGTATGAAAAAAAA
TATAACATGGTTGCGTAAAATGGCTAGAAGAATCAACTCAGAAATATTGTCAAAAATGAA
AAGAACCAAAAACTACAGGTAGACTCAGTACTGAAACGTAACAAATTGTGCCACCGTTAA
ATCAAGTACTGAAACATAACAAATTTAATTAAAATTCACGTACATTTCTTGGTTCGATTT
TGGTTGGTCCATGTGTCATTCGCCTTGCCAATTCCAAAACAAACAGGATCAGCAGTTCAC
CACTCTCTGCTAGCTAGAAAGGTAAACCAAAAAACCCAGATTGAACTGAGGGTGTAGCAC
CCACTGTGTGTCTTCTACCCTACCAGTAACAGGAAAATAGCACAAACACTGACACAGTCT
ACACTACACTTTGCTCGGTTGCTTGTGTCTCTACCTCCTTCACCGCCAGGGGCTCATACC
AGGCAGGCCCAAATCCAGCCGCTTTCCTAGCTTCCGTATTGAAAGGGGGCTTCAGTGGTC
CTCGGAAATGCTCTCTAACAATGCTGTGGAACCTCTCAATGATTGCCATTTCATCAGCGT
CCCCATTTTCGCCTAGGCGGCACCTTGCCAGTCCATCCTCCACTTGTTGAACCGTCTCAT
CATGGCTATTAATATCTTCTGTCGGCTTATCTGCCAATCCATCATGCACCGCTTGGGAAG
TCTTATTATCATCAGCTGTCCTTACTTCTCGCAGCTCGGCGCAGTGGGGTTTAGGCTGCG
GAACTGGAGGTGCAATTGGATCGCTGGCGAGGGACCGGAGGCACAAGTATCTAAACCATC
TAACACCAGCTGCACAGTGTGTTATCTCTTCTGGATAGATAATATCTTCAAGTAGTTTGG
CTGTTTCTTCATCCCCACCAGCACGGAACCTTGATATGGTGGTTGGAAGGACATCTAATC
CCCTAGCCTGTGTTCCAAATGGGCATTTATCAGAAATAAATATGTGCATATGATTGATCA
GAGTTTATCACATGATGATGTTGGCATAGTATTATGCATAATAGATACATGCTGATTTTT
CCCATCACTTCACTAAATTACGGGCATGTAATAGCTTAACTGGTCACATTGATAGACAGT
TAACCGCAATTATAGAAAGGACCATCTGGTGGATAGTTCACTAAAAGGGCAGCTCAAGTC
CTACATTAGGACACATTTTTCAGCTTGGTTCTAAGTTCACTGAAGAAATTGCTTTGCAAG
GATTGCTACTTTCTCTGGAGTAAATTATGCACACCCAAACAGTCCAAAATCTTTGGTTTA
CGAAGAACATAAGGTTGGTCTGATACCATAGGCCATAGCCCAAAGTTCAGATACCACGTC
AAAGTGCAAATGTCACAATTAGTATGCACTTTATGAACCAATCAGAAGTGAAATATAAGA
AAGAAGGAAAATGTACAGCATATCAATTACAAGTAGATCTTTTTTTGGTTATTAAAAGAG
TCGGTTGACAGATATCATTACAGGTTATTCCTCATGGTTACTCCCTGAGGCGGCTTCTTA
CATCTTCATTTAGGTACATGAGAATAGTGGTACAATTTACTCTCTCTGGATACTCTACAA
AATTAGAAGGTTTTGTAGAAATAGAATTTGAGGGTTCTACTCATACTACCCCAGTAAAGA
GTGTGAGTTAGTTCAGTTAATTCGTTCCATTGTAATTCTAACATTTTGCTTATCAGAAGA
GTCGTTATCAACCAACCATTAATTGGTCCATTGAATTACCACGAGTAGCTCATTTTCTTG
CACTGAGAACACAAGAACATACAGATGGTTCATAATCCTTACACCAAAGTCAGAAACTAG
TTCTCTTGCAAGCTTCCAAGTTTCAAGTAGAACACTAGTCTTCAAAACTACTATAACTTT
TATGCAACCAACCATAAATGAAGAAACTGAAATGATGATTGATTTAGCATCGAAATTTCA
TAGAACAAATGATGTTTCAACTTTCAAGGCATTGGCTGCTTGTAAGCCTACAATGGCAAA
GTCGTGTAGAAAGCCTCTAGCTCAATGTATCGAGTCAATTTGGGCATCGCTAAGCGAATT
ACTGTCCTCAATTCCTCATGCCATTGGTAAATAAAGAGGTACCTCGTGGACGCAGTGCTC
GACGGCCAGGCGGGCGAGGAGGCAGTGCGAGGTGCGCATCGCCGAGTCCCAGAGGCCGTC
GTGCGCGGGGAGCGCGCCGTAGTGCGACCCCAGCTCCCGAAGCCGCGCGGAGAGCACCGC
GAAGTGCCGCCCTTCGTCCTGCGCGACGCGGGCGAAGTCGTCGAAGAAGCCGCGGGGCAT
GCGGAGCTGCGCGCCGAAGCGGGCGACGATGTCCCAGGAGAGGTCGACGGCCCAGCTCTC
GGTGTGCGCCAGCGAGTGCAGCATCGCCAGCCGGCTCTGCGCGCTGCCGCCCTTGCCCAG
CTTGGGCGCCCGGGAGGGCGGGAGCAGCCGCACCGCGTCGCTCCGCGCCGGGCGGTCCGG
CGGGGCGCGCGCGGGCTGCGCCGGGTCGCAGGGGCGGGGGTAGGATGGGCGGGGTACAAC
GGTCGGGGTGAGGATGTCCAGCAGGTGTTTACATGCCTGTTGGCACGTTTAG