morexGenes - Barley RNA-seq Database

Contig contig_59193

Source Contig contig_59193

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_59193 (4511 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_59193

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71118	1	2259 bp	None	Available	Available	None
MLOC_71117	3	1410 bp	AK363025	Not available	Available	None

CDS Structure of MLOC_71118

CDS Structure of MLOC_71117

Contig Sequence (4511 bp)

>contig_59193 4511 assembly3_WGSMorex_rbca.fasta
GCTCCGAAGCCACCCATCCCTCCCATGGTCTCCATGGTAGCTCCAAAGCCACCCATGGCA
CCCATGCCGCCCATGGTAGCTCCAAAGCCACCCATGGCACCCATGCCGCCCATGGTAGCT
CCAAAGCCACCCGTCGCACGCCCTGCAAGTTTCTTCCTCGACGGCTTGGAGATGCTTAGG
ATTCTATTGGTTTGGGGTGTCCACATCTGTATAATGAGACACAATGTATTGAATAAGGGG
ACAGCAATAATTATAATAACTATAGCGCCTTGCTGCGGGAATTTATAGCAATACATTTTC
TAGAATAAAATTAGAATATATGAGAATAATGGCCCTCTACTTTCTCGATATATGAAGAGT
AGCAGTAAATGGAGGAGAGTTCACGCTATATGATTTGTTGCTAGAAAAAAGGAAGGTGAC
ATGGAAGGCCTTCATGTGCCGTTGATGATGTACATGGCATGCATGTGGCGCAAAATGGAA
TATGAAGGGAGTGCATGTACTTGATGTGGAGGACTAAATGACATGCGTGGTGAGGTGGGA
TGTGTGCATGTTGAGAAAAATAGAAGTAGCGGGGCGCCATGGCACACCACCTACTTACTG
GTACTCTTCATCATATCGAGAAAGTCATGTCCCCCGGGACGCAGAGTAGAGTAGCAGTAA
GTGGCACAAAATAGAAGATCCTGCCTAGCTCCTCCATGGCACACCACCTACTTACAGGAC
ACAAGACCCCCGGGCCCAACCATCATATCTTCTGTTCTGTCGATACCAAAACGGCTTGAC
AATGTGGATTGATTGGTATGTACATCACAAAGTATGGTTGTTGGTTGTCACATGGATAGT
TTCAAGACCATTGCTATCAGGGATCACCCCGTTTACGCCTCATTGTCTAATCGGTTGGGG
CTAGGTGTTTGAAGTCTTGCTTTTCGTGGAAATGATTAGGTAGGTACAATCTGCAAAAAT
ACCTGTTGTTGCTGGCGATAGACATGGCAGACACATGGGTCAAACTAGGGTCTTAGGGCC
CATCTAAATTAGCTCTCTATGAATCACATTGGCCCATCCCTCTCCTAGGTTAGGGACCTA
ATCTAAGAGGGTTGGACTTTGGAGCTCTTCACATTCTGTTGGAGCACCACTTCTCTTGTT
ACATGTTGGATCAGGTGGATGGAACGGGAAACTACAGACGGACGAGAAGACGCGAAGGCA
TGGTGGAGACTAAGGTGCTAGAGAGAAGCTCGTTTCTCCCGTGCCCGCTCCTTGTTGGAC
ATGTGTTTGAACCAGGGGGCTACAAGTTTACCCTTCGGGCTTGTACCCGCCAACAATAGT
AACAATTAATTTGGAAAAGAAGCTTTTGAATAGCAAAATACGCATATTCACAAATATTAA
CTTGTAACCAAAAAATATCACAGAATTAACTAATACTCCCTCCTTACCGGTCTATTGGGC
TCATCTTGTGCAAATTATATAAACCAAGGAGGACCTACTTAAGTACTTCTGTTCCTTTAT
GTAATGTGTATTTTTTCGGCACGGTGATGAAGGCACATAATTGTAGAGAATTTAGGACGA
AATTACCCTTGGCTAATTCGTTGGTTAGTGGCATGTAATTCAATTAGGCCGGGAAAGGAA
GGGATATAGGCAATCGAGAGAGAGACTTTCCTTTTTTTGTGTAGAAGGAGAGATACAGGC
TATCGCGAGAGAGATAGTTTCCTTAAAAAAGGAATTACGAGGAATTAGAAGAAATGCACC
TTACATCATGGAATTTATCAGAAAACAAATACACCTTATATAAAGGAACAGAGGGAGTAC
CAGGCAACATATTAATGCTACATGCATGGCCCTCTCACTCCTTTATGCATTGGTTGATTT
TACATTTGGAACAAAAGTTTGATTGGAATATAATGTGGACATATATTTGCATGTCCCCAA
GACAATGGGCCTTACAAATTGAAATTTTCTGATTTTTAAGATAGGCCCTTTAAATCGGAA
AGGAGGGAGTACTGTGTCAAATGCAGTACTGGGGATATTTTGTTTTAGCAATGTTTATGA
AAAAAAATAGATGCTCCCTAATATTATATTTATATGTAGAAATGCTCGTTTTTTTAGTGC
ATATATATAAAGTTCCACTCTTTAATCAGCATATTTAAGGCTTCGTCCAGACTTATAAGT
TACATACTTGGATCAGCTGAAGCGCAAGGTTTGTTTGCTATGAATTTTCTGAATGAGTGT
CAGCCATGTAACATGTCTAAATAGGAGCCCCCACTTCCAGATTTTCCTGCAACCTCAGCG
AGCCATGTCATCTGAATTGTTCTAGCCGTTGATGCAATATAGCCCAGCCATCTGCAGCCG
TCTGATCTCTTCTCATCTTTGTGTTTACTCTCTTCTGCTCCACCAAACAATCCATGGTCA
CCGAAGCAAGGTGATCGGCTGCTTCCTCTTCTGCCTTCCGTAGCCGACGAGTGATCTCAT
GGTCACTGAAGCGAGGTGAGCGGTGCTGCCTCTTCTGCCTTCTGTAACCGACGAGTCAAG
AGATTTCCTCTTCCACGGGTTATTACTCCCTCGACTATCCTCTCTCGCAAGGCTGCATCT
CTCTCGATCCCCCATCTGTCTCTTTGCGTCACTCACGCTGCCAGCTGCCTCGCGGCGCAC
CCTGCCTTCGCTCTCATCTCCTGGCTCCCCCGTGCACCTAGCCATGTAATTTAGTTAAAA
TGAGGAGAAAAAAAATGTATGAGACTGGTGGCCATGCTGTGCATTTTTCTCATACCTCAA
AACTTCACAATTTTAAAATACTTCTTCAAATATAATTTGTGCATCTACTCATCTGGCTTC
ACTGTCAGGCGGCCCCTAAAACATCTACACCACCTGCCGCAAGGACTACTAAGAAATCGG
GTGGCCAGAAGAAATCATTGGAAACGGCTGGTTCAGCACCACCACCATCCAGGTTTCAGA
GTTTGCGCCATCCCACTGGTTCCGTCTTGTTATCTGATGTATAGCTTACGGAGTACTTGC
ATTTTATGGATAACCCCAATCTAATTTCCTTTCTGTTTCTAGCAAAAGACAAAAGACAGC
TGGAGCCTTCCAGGAACAAAGCATCGATCAACTTAATGATGTCACAGCTGTTAGTGGTGT
TAATCTTAGGGTATGAATCTTCCTGGTTGATGTTTCGTTTCTAATACTACCTGTGTGTCT
TGTTTATACTCTATTGGTACTTTTTTACTTGACTAGGAAGAAGAGGAACAACTGCTCTCT
GCCCCCAAGGAAGAGAGCCCAGCCACAGAGGCCGCACGGAGAATCGTACAGGAGGAAGAA
GAAAACCTCTTTCTGCAGAAGGGCCCTCTTGTGAAGAAACTAGCAGAAATCGGTTAATCC
CTTTGAACTTATTAGACACCATAAAACTGTATGTACATACACCATATAAATATTTAAAGC
AATACTGACTGATGACATGTTTTTGACAGTTCTTAAATGTAACTTGAAGAACGCTGGCGC
TGATGTTGGGCGTTGTTTATCAATGGTAAGCTGTTCATAGGACCGCCTGTCAGAATTTTG
TGCCAGTATGTCTAAACCTTAACTCTTACGTAGTGTGTGGAGGAGCGACTGCGAAGATTC
ATAAGTACTCTTATAAGAGTTTCAAAGCAGGTTAGCCATTTCACATTATTCAGTTATCGG
GTTGTGGTATAGTTGGATATTGTGAGATACTAACCATGCTTGTCGTGTTGCTAGAGAGTC
GACGCAGAAAAGACTGGTCATCGACTAGTTATTACTTCAGATGTCGGACGCCAAATTTTG
CAGATGAACCAGAAAGCTAAAGAAGAATGGGACAAAAAACAAGCAGAAACAGACAAGAAC
AAGAAACAGACTGAGGTGCTCCATAATCTCCATTTTATGCATATTCAACTTGGATGACGA
GCTTGCTGTGTTGAAGCATCATGCTATTAGATGATTGCATGGTATTCAAAGTTACTTAGA
ATTAATAAGTGTTTTAAAACAAGCAATTTTTGTTTATCCACACCTTTCTGGAATTTATAC
ACATGTTGGTTCTAAATCCTTGAGAGCTCGTCAGTTCTAATTTGCGTCTTAGTAAAAAAA
AACGAAAGAGAATAGAATTGAATCGAATCAATCTAGCTGTTCTATAGTGGCTTACAGTTT
TTGGTATTTTTATCGTACTGAATGATGCTCTAAACTGAACAAGAGTGTTTGGTAATAAGT
GTGCCCCAGTTTTGTACTGGAAGATCTACTTGCTCACTTATAGGTAGCAAAATCTCATTG
AAATGCGTGTTGGTGACTTCAGTTCATTTTATGCTTGCGTACAGGATGGTAGCAGTGGTG
GCGCAGAATTGGAGAAAGAAAAAGAGGAAAGCCGTCCAAAGAATGCGAAGGTAAGTATCT
GATGTTGTCTCTCTAGTTTGACATCTCTTCTTTTCCTGATAACTTAATCTCTTGCAGCCC
AACAAAGAAGAAGATGATAAAATGAGAACAACGGCAGCAAATGTTGCTGCTCGGCAGGCA
GTTGGAGGAAG