morexGenes - Barley RNA-seq Database

Contig contig_5919
Source Contig contig_5919
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_5919 (7672 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_5919

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71116	1	2099 bp	AK252796.1	Available	Available	None
CDS Structure of MLOC_71116

Contig Sequence (7672 bp)

>contig_5919 7672 assembly3_WGSMorex_rbca.fasta
AGGCCCTTTTTCTACTAGTGGTAGGTATAGTGATGACAAATAACCATTGTACGAGTACAA
CACAGTAGCTAAGATTGCCTAAAAAAGATGTAATAGCTAAAAACATGGAAGCAGACAGTG
GCACTTTGCTTGCATGTCGGGCTCGGCCGGCCCTACGTTGAGATTGGATGAGAGGAACTT
TTTTTATGATAATGTATGTCTCATTTATAAAATAAGATCGAGAACGTCGTATAGTTATAG
GAGTGACAAATAATCGTTGTACAAGTACGACACAATAGCTAAAATTGCCCAAAAAGACGT
AATAGCTATAAAAACATGGGAGCAGCCACTAGCACTTTGCTTGCATGCTGCCCTCAGCCG
GCCCTACGCTGAGATTGGATGAGAGGAACCTTTTTTTTTCATGAAATGTGTGTCTTATTT
ATAAAATAAGATCAAGTTATAAAACACGTAAACATAACCTTACAAGACTTAAAAGATATA
ATAATCCTACGCAAAATACCATCGCCTATCCAATCATCTTTTCACCTGAACTCGACGCGG
CTCCATCATTGATCTACAGCTTTACGGACCTTCAAAATAATTTGCTAAAAGCAAAACCAT
TTAAAACGGAAATAGTGACATGCGCTCTCTCTCTCCCTGCCCGTAGCAGTAGCACCAGCG
TTTCCAAAAACGATGCTCCTCCTCGTATCCGAAATGCCTGGCTGGCTGCAGAGGGCTGTG
ATTGAATTGAATTAAACGGAAACAAAATGATGTTAGTGCAGTTGTTAGTAGGAGTACTCG
GCATGGTAGAGATGGCAGGACATTTTAGGGCTGCTAGGCTAGGCAGGGCTCGGCCCAGGC
CAGGAGGCAGCAGAGTGGTCACTCACTCACTGATGATCAGCTCGGCTCCGGTTCAGTTCA
CCCCCCCTGGCTGCCTCTGGGTCTCTGTCAAGAGAAGCATTTGTTATGCACGACGATCAA
TACTTTATCGATTTTCTATACTGCCATTCTGTGGTCCTACATGCGTTCATTCGTGATAGC
CTTTCATTTTCTCTTTCCCTTTCCATGCTACTCCCAAGGAAGAATCCTATGTTATACTCA
CTTGGTCCCAAATTACTTATCGCATAAATTTATAAAAATACATATATTTAATACTAAAAT
ACATCTAAATTCATTTATTCATGTGATAAGTATTTTCGTATGAAAAATTATTGTCATCTC
GTATTTCTAGAATGACACAAACGCTATTGAACTTTAAGAATACCTAAAAACAAAAGCATT
GTTAACGACAAGGGGCGAGATTCACCGCACCTTCATGGCTTTGAGGTCACATGAGAGTAT
GAGACGAAGCGGGCGGGCGGTCGGAGGGGTGACGAGATTATTATTATTTATTACGAACCA
AAAGCGTGTCGTCATCAGTCGAGGTTTTTTTTTTAAGAGGAGGCGGATGCGTAGATGATT
TAATTCGTAACCAAATTACATGTGATGACAACCTTTTCTTTTTCAAAAAACTGGAGCAGC
AACAAACTACTAGTAGCACTCCAGAAAGAAATGGTCGCTGATGGAGCGAGTGGCCGGCTA
GAATGGCGTCGACGGCGGCAGGAATGGACGGTCAAAGGCGACGTCGCGGTCCATGCGATC
TCCGTCGATCTCAACCCCTGTTACCAATTCATTTCTCTCTTTTTTTTATAGGTGGATACG
GTACTGCCACTGATGGTTCTATTTTTCGTAGGTCGCTGTTTGCCTTTTCAGATATTTCAG
CCGTCCAATCAATTGGGATGCGGTCGATCGACGGCTACTTTCATACGTTTATTATTACAA
AAAGAAAGCGACCACGGTCGACGTATACATACACGTGTGTGAGAGAAAATGGTAGTGTCT
GGATTCAAGTGATACTTGCATTATTTTTAAATTTATTTTAAAAAATTTGATGATACTTTT
TTAACGCGAGAAGACGTTCACGACGAGACATCTATGATAATTTTCTATCTCTCAAGATGA
TATGTAGGTTAAGTTTCTCTATTCATAAGGACAAGATATGCACGTATACATTCATTAGGA
TAAATGTATGCTATATGAACGTTTAAAAAAAAAGTGTACCCTCAACGGTACAAGGAATAA
ATGTATGCTATATGCTAAATGAATGCTCCGCTTGTTTTCTTCGACCGCGTCAAATAAAAA
GGTTCGTCACAAGAAAGTTGGCCATGGGATAACGTCGAAATACAGATGGGAGACTTCATT
TTTCAGGTTACGTTGTTACTATCCATAGCCTTAGAAAAAGGACCGGGCCGGAATTGTTAT
GACCAAGTGAAAATGCTTACTTCCTTTTCGGAAACTCCTCATGTTTTTTCAAGGTTAAGA
GAGCACAATGCACTAACCAGGATTGATTATAATTCACCCCTACGACAAGACAGAATGGAT
TACATAATTCTAACAGAAACGAGAACCAAATCGCCGAAAGCGCGCACAAAAAATACATAG
CTACTCAACTTGATCCAGCAAAACATTCTGCATACAAACACGAGCGTAGAAACAGATCGA
CACCACAAGGGCACACACTGTCACAACAAGTACAATCTCTTCCGTTCAAGCATTCCCCAC
CCCACCGCATCACTACTCGCTACTCGGCACACCAGAGAGCAAAACAGCCAAACAAAAACT
CTCGCCTCGGCCTGAAAGGAGCGAGCGCTATGTTTAGGTCGGTTTCCTCATGTTGCGGCC
TGCCCTGATCACCTCGTCCACTAGCAACAGCTGCGACGCGATGATGGGTCTGCACCACCA
AACAACCAAAGATCATTTGTCAACACACATCACAAATAATACTCGTCTTTTTTTGGAGAA
TGAACGTGCCAGATCAGAAATGAAACACCTGGTCACATACCCGGAATTGACGATCTGGCG
CTTCACCGAGTAGTTGTCGTAGATGCCTTCCATCTCCGGGTCAACCGGCTCGCCAGTGTT
ATGGTTCAGCCCCACCACCAGCCCACGGTCGTGCTCATTCTGTTGGAACATCAGCCAACG
CATCAGTTACTGATGCCCGAACTCGAAGATGAAGTGTCAGGGAAAGACAGTACAATAAGT
GGAAGTGCATACCTCTAGGGAGACAATAACGTCCTGGGTATCTAAACCCGAATTCTCCGC
TAGCGTCTTGGGGATAACAAGTAGAGCGTCGGCAAATGCTCCCACCCCGAGTTGGGCTCG
CTGTTGTTAAGATTCCAGGTTAGCAGCAGCATACTTACTGATACTGATACAGTAGAAAGG
AGCATTTCAATCATTCAGTGCACTTACTCCTTTAACGGTTTTCTTCACATTGTCAATGAG
ATTCTTCCTTGCAGCTATCTCAAACGCTCCTGCGCCCTACAGTTGACAAATCAAATACAA
TATATAACATGACAAAGAAGCCGTCGGTCAATCATGATCCAAAGCAAATAAGGGAGATCC
TAAAGCAACACAAGACAGCCCAAGGTAATAAAATGGATGCTATAAGCTGCCAGTCCCATA
AGAAAATAATTAAGAGTAACAAAAAAAATATCAATCAGTATTACCTCTGAATTATGTCAA
ACCTGACCCAACAAACAATGCAAGGAATGTCTCAACATAAATCAAGTTGAACGCTCTTGA
CAGCCAAAGTAAATATATAATACTCCATCGATCCACATAACTTTGTCGTTGAAACGGATG
TATCTAACCATATTTTAGTGCTAGATACATCCATTTGTGCGACAGTTAATATATGGATCT
GAGGGAGTAACATATTACTATGCTCAAGGAGTTCATGAAATTCCCAGCACCTCATGCAAA
CTACGAAATCCTAATCAAATGTGCATATGTATGCTCAAGTAGATCATGAAGTTTCCCCTC
ACCTCATGCAAATTATGAAATCCTAAACAAATGTGCATATTTATGCCCCCCAAGTAGATC
ATGAAGTTTCCCCGCACCTCATGCAAACTACAAAATCCTAATCAAATGTGCACATTTATG
CTCAAGTAGATCATGAAGTTTCCCCTGCCTCATGCAAACTTTGAAAGCCTAATCAAATGT
GCATATTTATTTAGCAAAATATTTGTTTTCGCACTGTCTTGTGGAAGAAATTTACAAATC
ATACCAGCACAACAGCTTCATCCTCAACTGTATTCTTCACAGATCTTAGACCATCTCGTA
CGGCATCCTTAATTTGTGCAATGGTGTGATCATTAGGTCCTGAAGATATTTGAATTTACA
GTAAGTTTCCGATACAGCTAGCTGCGAAAAAGATCCTACTGTTTCTCGAGAATGTACTGA
CCTTTGATCAATATAGTACAGGAGTGAGGATTCTTAACATTCTCCACGAACGTGTATTTT
TCTTCTCCAAGAACATGCTCATAGACAAGCCCAGCCCAGCCAAGACATTCTTCAGTCATG
CCTTCAACTGAATTGATGGCTTCGCCACCGCATGCTAGCACAAGTCTCTCCATGTTCCTC
CTCTTCGCTCTTCGGAGAGCAATAATCTGCAGCATGCAGATTCTTGAGTTTAAAATGTAA
TAACAAGGTCCCAATGCAAAAAACTTGTCAGTTAAAAATTAACAATGCATGAACTCAAAT
CTGAATCATTTATTGCATTGCCATCATTTGAAATATTGATCATCATGCTTAGGTTTTAGG
TAGTTCCATTTTGTGACTTATAGAGTAGCATTGTGTATAATGTAATATCAACTTTCATGT
TACAAGTTCAGCTGGTGACACCATGACACCCCTTAACTGGAACCCCAAACAGATCAAGGT
TGAATGCAAGCAAATTAGAACCATCATGTAGAAACAAGTCAGAATTGGTTACCCCAGCTC
TAGCTAGGAGATCGAGGGATGGAGGATCGATGCCCTTTTGGTTGATCACCACAAAATTCT
TGTCAGTTCCGGCGCAAACCTGCATGGCCAAGGAAACACGTGAAGACAATATTTTCCAAA
CGATGAGAGAGACAGAGACAGAGACGCTAAGCAAATACCTTATTTTTCAATTCAATGATC
TTCTGGACACGTTCATCAACTTGACGCCTCTCTGCAGTAACCATCTTTTCTCTTTGTTCT
GCATTTGAGTAGAAGAATCCTGCATTTATTTCACTGAGAAACTTATGTGTCAGTTAAAGA
GTTCCCTTCACTGATACAAGTACAACAGGTAAAGACAGACTGCTGCTGTGCACTACAAGT
TGGCCCATGACATGCAAGGGAAAAACATAAGTTGACTAAAATCAGTAATTCTAGGTAAGA
TTCTACATGTTTTTGACAAATATTGAAGTATGAACCTTCTTATATTTCATGCAGCCGAAC
TGAAAGAATGTATCCATTGTGATTAACAGAACTAGAGTATGCAACAAGGTACTCTATGCA
AAAGTATGCACCTTTTCTCATATTCCAGTGATACATTAGCTGTCAGGATGTAACAATTCT
CTGCTCTGCGCTTCATGTCAGGGTGCCGAGAACCATGGTCAAGGACTAGACCCTCGATCT
ACAAAAAAGAAAGGAACAAGTGTTCGGACGTTACATTGTAATAACTAAGGTTCATTTATT
TGTGTGGCAAAGAATACATATGAACAGAACAAAAAACTACAATCAACAGGTAGCCATGTT
CACAAGCTTGTGACTGAAAATACATATGAACTATTTATCCAAAGGTCTATGAAGTTCATA
AGGATGTTATATTGGGCAAACTGCAAAGAAAAAAAACAATAAATACCAGACGTGTGTCGA
CGTCGAATTTGTGGCGCATATGCATTATTTCCACCATAAAAAGATCAATTGGTTGATCAC
TTTGGCGGATGCATAGGACCTACAGCATGGGCCATACAGAAAATAGAAATATGTTAAGCA
ATCATGTGGAATAAAAGCCACCAAAGGAAACACTGTAAAAGAAATATAACATTACCGCAT
TTACAACAATATCAGTCAACTGATCAGCCAATCCTTCATACAGCTACAAAATATCAAATT
TTTGTATAAGCCTTGGTAAACATGTGTACATTTGTTTACAAAGAAACATGGTGAAATAGA
GTGCAATCACCTTTGTCCTGAGAGTTGTTCTTGCTACCATTTTCAAGATCTCCCTGTCGG
GTTGATCACCAATAACGACTGATGTCTTGAATGTCTCGAGAAATTCAAGAGTTGCTTTCT
TGGCAACCTCAAAGCCATCAACCAAAAAACGTGGATGAGTACCTGCAAAAATAACAATCG
GTTACTATGAACTTATAACAAGGAGGCAGCTACCATATAAACACATGGGTTTTCCCTCTA
AGAAACAGCATTGCAATTGGAGGTAACATTTTGTCACAAGCTTAGAGCAGAAGCCAATAT
TTTTAGGGTTAATATTTGGCACTGTTGTGTAGCAACCAGCTGGGAAATGCATCTTCAGAG
CACAATAATGACCACAAAATGCACATCACCGTGCAACAAGAGTAATCCCTATCTTAAAAA
TACTCAGAAATCAAAATTATACTGCATTACTCTCAATCTTCAGTTGGCTATTGATTCAAC
CAATTAGTCATGTTACAGTCACAGTCAAATATATCAGGCATGCCACACCCATAGACATTT
GGCAGTGGTGCATGCCAACAATTATTTTATCTTCATTTTTCTTTGTAGGCACTTGTGTTT
GTGAAGATTGCACACCATTGTAAAAGTAGTCATTCTTAATATTAATCAACTAAATAGATG
CATTAATTAAGCCAGAATACCAGCCCATGATTCCCTACACAAGAATACTCTTCAGAAAGA
TTAACAGCAAACATCGCATTTAACTGTATAGTGCTCTCGTAGATGCCTAAACAACATTTC
AAATGCAATAAAAATATCAATGATTTGATTCATCAAAGCAGATAAAAGAGGGATGGGACC
ACACAAACTGACCTTCTTCGATGCATCGCTCAGACATCTTCATAAGCTCCCCGATGAAAA
GCACTGTGGATGTGGTGCCATCACCGCTCGTGTCGTCCTGCGCCACCGCTGTCCTCGCAA
TCATGATTGCTGTTGGGTTCTGGATTTGCTGGAATAGCAACAACAACACCACAAAGCATC
AGAAACCAGACTAGAGAGCATGACAAGGTAGGTCATCACTGTAACTATGAGCATATTTGA
TTAGTACCATTTCTTTCAAGAGGGTGTTCCCGTCCTTGGTCAGCTTGATGTCTCCAGCTC
CACCGACGAGCCTGCGCATCACAGATCAAAGAATCAGTCGGATATAGCAAGCATCACAGT
CACTATAAGTAAAGGACGCAATGGAGTTGCCTAAAGATCTATCCATGGACCAACGCTAAT
AGTATAGTTCGTCGCCTTTAAAGATTGACAGTAACTAAGGAATCACCAACCCCGACTTGA
TCCAATCAGCCAAAACCGAAAGCATTGGTGAGAGCAGATTGCTGACGCGGCATTACTCCG
CCCATACACAGTTCCAAACCTGAACATTCAGTTAACGATAATCCAAAGACGAGGGCACAT
CCTGGATCGAAATGGGGAGAAAAATAGATCCCCGTCCTACTCTAACAAGATCGCCCCTAC
TCTAGTCACGAGGCACAAGGGAGACGCGAAGACCACCCCGGGCGCCGTCGTTTCCAAATC
TGCCTACGCGAGACCTAAGAGGAGGAGGAGGAGGAGTCGCGCGCGATCCGGCGGCGAGCC
GCGCACTGCGGGGAAGGGTGGCTAGCGGGGGGAGAAGGGGGAGGGGAGAGGG