morexGenes - Barley RNA-seq Database

Contig contig_5903
Source Contig contig_5903
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_5903 (6741 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_5903

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71042	2	1540 bp	AK358395	Available	Available	None
MLOC_71043	1	2734 bp	MLOC_71043.1	Available	Available	LOC_Os04g49520.1, FRAME:-1, EVALUE:0.0, 13104.m05057 protein pentatricopeptide repeat protein PPR868-14, putative, expressed
CDS Structure of MLOC_71042

CDS Structure of MLOC_71043

Contig Sequence (6741 bp)

>contig_5903 6741 assembly3_WGSMorex_rbca.fasta
GCAAGTCCATCTCCAAGCGCAAGCTCATCACAAAGGAGGACATCGACGACGTGCGACGCG
AGATCCAGATCATGCACCACCTCTCCGGACACAAGAACGTCGTCGCCATCAAGGGCGCCT
ACGAGGACCAGCTCTACGTGCACATCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCG
ACCGCATCATACAGCGGGGACACTACAGCGAGCGCAAGGCCGCCGAGCTCACCAGGATCA
TCGTCGGGGTCGTCGAGGCCTGCCACTCGCTCGGGGTCATGCACCGGGACCTCAAGCCCG
AGAACTTCCTGCTCGCCAACAAGGACGACGACCTCTCGCTCAAGGCCATCGACTTCGGGC
TCTCCGTCTTCTTCAAGCCTGGTGAGCTACTCCTGCTGGCTGCCTGCACCTCCTTAGTAC
TACATTAATCCTTCCTGCTCTAGTCGGTCAACGACTGCGATGTCCTTAATTAATTTGGTA
CTACTACTACACTAGTATTGCCGAAGCTAATGCCCACATAATTAACTGTGGTTTGGCTTG
CGATTGGATTCGGATGGTACTCCTAGATGCTTACATGACGGAACCTTATCTGGAATCATG
CCACCAAAATAGGAGTATGAAGGATTAATGAAGTATTAATGGTGATTAGTCATGAGACCC
TTTACGTGATGGCACTGGACAACATTCCCTTAATGCAATTTTACTTTGGACTTTCTGAAA
TACAAGTTCACTGGGAAACTCATCCTAGTTGAATGGCAGTGGGAAGTCCGAAACTGATGG
AAATGGAAATTGCTATATTTGGGGAAAGAATATTCTGTAGCAGTCTATTCTAGAATCTGC
ATGGTGCCTTTCCGCTTATATGACTTTGTGATGCACTCTACGCTCATGCCTCCCTTCCTC
ATTCTTGCTCTGTTTATTCCAGGCCAAATTTTCACCGATGTTGTTGGAAGCCCATATTAT
GTAGCGCCAGAAGTGCTGTGCAAAAAATATGGACCAGAAGCTGATGTCTGGACCGCTGGT
GTAATTCTCTACATTCTGCTAAGCGGTGTACCCCCATTTTGGGCAGGTGATTGATTTTTT
TACCCTTCAATTAACTTGGGAGCTTGTCTTCTGACGATTGTAGGCTTACCTGTGTTTATG
AATGTATATAACGCAGAGACGCAGCAAGGAATATTTGATGCTGTACTGAAAGGTGTCATT
GATTTTGATTCTGAACCCTGGCCTGTGATATCTGACAGTGCAAAAGATCTGATAACAAGA
ATGCTCAATCCTCGCCCAGCTGAACGCTTGACAGCACACGAAGTTCTATGTTAGTTTCTT
TCACTACTTTACGCTCCTGGTTCCATGCCTTCTCTACTCCCTTAATGCGTTCGCTCAATT
GACATACTTGCAACCATTGCATTCAGGCCATCCATGGATTCGTGATCATGGAGTTGCTCC
TGATCGTCCTCTTGACACAGCTGTCTTATCTCGCATCAAACAATTCTCTGCGATGAATAA
GTTGAAGAAGATGGCTTTGCGGGTGAGTTCAATTCTTCTTGAGCTCATGTTTTTAATTGC
CTGCTTTGGATCCATGAGCTTGCAAGGAGGCTATTTTTGGCGTTTGTCTCTTAAAGACTC
TTGTTCACTCTGTCAGAATTGCTTTACACATGCATTCTTTGCCACTTGTTGAATTTTTAA
ATGACCTTCTATGCAAAATAGTACTTTGCCATTGGTTCTGTTCGGGCTATCCTATGATTT
TTATTGAACTGTCAGCCTGTCACCTACTAATCAAAGTGCTTACCTGACTGGATTCCCATT
ATCTTGTACTAATATGAGCGATATGCTTGATGATAAATTTCCATTCTTCCTTTGCATGAC
ATGAGGGAGTTATCAAAACAAATTGTATCGAGTTCTGAAATATGTCTTTGTGTGATGAAG
CATACTTTGCGAATTATGCATTAACTGATATTTCGTGATCATTTTACCAGGTAATAGCTG
AAAGCCTCTCAGAGGAGGAAATTGCAGGGCTGAAGGAAATGTTCCAGACTATGGATGCCG
ATAACAGTGGTGCAATTACATATGATGAGCTCAAAGAAGGCTTGAGAAAATATGGCTCCA
CATTAAAGGATACTGAGATTCGTGATCTTATGGACGCGGTGAGTTAGCCAAAACCTACTA
CTGGCTTTGATTTCTTTCTTAAATGACCAAATACCTCAAGTCTCCTAATCTTAAATCCCT
ATGAAGTAGAAGCTTTTATAGTCTCTTAGAAACTTGGGCTGCCTCTGGCCAGCTCATATA
TTACATGATTATGAGGAAATTGGGAACTAGGCCATTTAATGCGCAAGCTGTTCTTCTTAC
AGTTGCATCTTTTTGTTGGTGGCTTTCTTTAGGGCATATATAATTAGGAAACATGCAGTA
GACATCATTTTACCTTTACATTATTCCTTTTGTCTGTTATGTTGCAAATAGGGGCACATA
ACTCTACTTCTGATATGCAAAACTGGATTTCTGAGAGTAAATGCTATAATCAAATTTTAA
TTATTTTTTAAAGCACCCAGCATTTGATTTCTCGTGAGAATTTATGCTTAAGCACCAGCA
GATGTGTATCTGTGAAAGTTATTTCTTAATCGACTAGTGTAGCAAGTCCAGAGAAATTTA
CTCTGCTGACTGATAAGTTCAGCTTGGGCTTTATGCCGCAGGCTTTGAAAACATTTCAAA
GACAAGTTATAACATGGTAAACGAAGAAACTTACATGTCCCTTGTGTATCATTTGATTCA
TTAGGCGGATGTGGACAACAGTGGGACCATCGACTATATAGAGTTCATCGCTGCAACATT
GCATCTGAATAAACTGGAGCGTGAGGAGCATCTGGTGGCAGCCTTTTCATATTTTGACAA
AGATGGAAGTGGTTACATCACAGTGGATGAGCTGCAGCAAGCTTGCCTGGAGCATAACAT
GCCAGATGCTTTTCTTGATGATGTCATTAAAGAAGCTGACCAGGACAATGTAAGTGTGGT
CTTAATTCTATATATTTATTATTCTCTAGATGTGGTATATCTTGGTTACCTATTAGTCCA
TTACTGCCTTCCTAGTTGGGATATGTACAATCAATGTAAGTAGCGGGATGCAATAGAGCT
TGTTCAGTAGTCCAGCCAAGACAATTAGGATCAAATACTTTCTGGGTGTGGGAACCATAT
TAGGCAAATGCTTGTCTAATAAATTCTACTTGTAGCTGCACGCTCTATTTGAGCATGGTT
TACGGATTCATTTTATGATTCCAGTGGACATAGATTTATGCCCTATAGTGCCGCTCCAAA
AGATAGTTTGGCTGAGAGAGGCTGCCTTCATCGACCAACATAGCTCAGTTGCTGCTTTGT
TAACGAATGAATGCTTATGGTTTTGTTATTAGTAACAAAAATAAGTTAGTTGCATGAACT
GCCTGTCCTGATTTTGCTCTCTTCTGTCAGGATGGGCGCATTGACTATGGAGAATTTGTT
GCCATGATGACCAAGGGCAACATGGGGGTCGGGCGAAGAACAATGAGAAACAGCCTGAAT
ATCAGCATGAGAGACGCACCTGGTGCAATCTAGACTTCCACGATGTATATACAGCTTGTG
GCTTTAGCTTCTTCCCGTCTTCCCGCTCCATCGAAGCCTTCCTGCAAATTATCGAATCTT
GTAAAATGCCTGTGTGGATGTGTGTTTCTGTGGATTCTGATTTAGCTCGTCAATTGATTC
GACGGAACGCATGCTAAGCTGGGTTGAAATGATCTCACACGTTGCTGCTGCTTAAATCCC
TGCAAATGTTCAGTGAAATTACCTCCTACTATATCTGCCTGCAATTGCTAACTCTTAAAT
TGCCTTGTCACGATGCAATGCAGCCCAGATTGATGAACAGTCCTGGACGTGATGTTACTT
TTTCCCTCTCTAGCACTGGCCGTGGTGCTAACGTATGAACTAGATGTGCTTATTGTCAAT
ATGACATAACTAAGCCTCTGTTCTCCAGTGGTTACCCCATCGCATCCTTTGCCCGTAGCT
TTCAGATGAATTTCTCCTCGGCGCTTTCCAGGTGAAGGAAACAAAGTGGCGAACATCAGA
CAGATAGTGGAGAGATACAAAACGCAGAATAATCAAAATAGTGGACATTTTACTCCTCTT
TGTTCCCAATGAGTCTGACGGGCTACACAGAAAAAGAACTACAGGGGATTCCTATGGTCA
CCAGTAGTCCCCGCAAGAGCAGGAACCGCCTTTGAAGTGGTGAAATCGAACGGCGTCTCG
AATCACAAACTCCCGACCGGTCACCGTCGATATCAACTTGATCACCGTGTGGCAGTCGCC
GCAAATGCGAAGGTTCTTCATGATGTGGATGGGCATCCAAGCAGGCAGGTTCATGATCCC
AAAGGCCACGGCCAGCTTCTCGCTGTGATGGATCTCAGATCGCAGGGACTCGGTCCTCAC
GTATCCGAGCTGTGCGATCTTCTCCATGAGCTCATCCAGCTTCTCCCGAATCGCGATCAC
CTGAGGGTGGCTCACGTCTTCTGCTTTGAAGACGTGAACTTTGTTTTTAACTTCCATCCA
GCTGTAGCCGGGGTTTTTCTTTATCCCCTTGTCTCGCATTAGCTTCCTAACTTGCGCGGA
ATCGACCGATTTCCCAGCATCGGCATAGATCTTTGCCAGAAGCATGTAGCCTCCAGAATC
AGGCGAGTCCAGGTCGAACAAGTGCTTAGCTGCCAATTCCGCGAGCTCGTTGTTGCCATG
TGTCTTGCAGGCGCTGAGAAGAGCCCCCCAGACTTCAGCGGTTGGTTTCATGGGCATCTC
GTCGATGAGATTCTTGGCTTCGATCAAATTCCCTGCACGGGCAAGAAGGTCCACCATACA
CGAGAAATGCTCCAACCCTGGAGATACGTTGTGGTCTCTCTTCAACATATCGAAATAAAA
CTTCCCCTCCTGCACGAGTCCAGAATGGCTGCAGCTTGACAGAATGGCAACATAGCTTAT
GTAGTCCGGTTTTGCCCCTTTCTTCAGCATATCATCAAAGATCTCTATAGCTTGCTTCCC
CATGCCGTGCTGTGAATAACCGGTGATCATGGCATTCCAGGAAACCAAATCCTTCCGACT
TAGAAAGTCAAATATTTTTCGAGCTTCTGATATCCTTCCGCATTTGGAGTACATTGTGAT
AACCGCGTTCATGACTGAGGTGTCTAAGATGAGACCAACCTTTACAGTATGACCAGTAAT
CTGATCTCCAAGTTTATTTGCGCCCATATCCGCACACCCTCTGAACAATGTGACATAAGT
AACCCAGTCAGGTATGACATCCTTCTCAGTTAGCATAGCACTATACATCTTGAGGCCATC
TTCCTCAGCTCCATGTTGTATATATGCCCCCAACATCGCATTCCATGTAATTACATTCCT
TGTGGACATGCCATCAAAGAACTCACGAGCTTTCCCTATGTTCCCCACTTGAGAATATGC
AGTAAGCATGCCAGTCCATGATACAATGTCCCTTTCTTCCATCGAACTGAATATAGATTC
AGCGTTCTGGAGATTGCCACACTTTGCATACATAGAGATAAGGGAATTAGAGACGACAAC
AGCTCGAGTGTGACCACTTTTCAGAGAGAGAGAATGCAGCTGCCTCGCAAGACACATATC
CATCCTGTTGGAGCAGCCACTTATTATAGTAGCCAGTGCAAACTGATCAACTGTCATCAG
TTCAGCTCTCATCTGATTGAATAGTTCAAGGGATTCACTGAAACATCCATACTGCAAGAA
TCCCCCAATAAGAACTGTCCACGACACAGTGTTCCGATCGCGTAAGGAGCTGAACACTCT
CCTTGCTTCCTTAAAACAGCCACATTTTGCATATAATTCAACCATAGCACTGGCAACGTA
TGGGTCAATACGCGGTAGGCTCCGAATCACCTGAGCATGGAGTTGCTTACCCCATCCCAG
TGAAGACAATTTAGCACATGCAGTCAGAGAGCTAGTGTATGTTGTCGAATCAAGACGCAC
ACCTCTATTGTGCATGTCCACAGCCACACTAAGGGCTTCTCTGGCTCGCCCACTCTGAGA
CAACGCGGATACCATCATGTTCCAAGAAACAACATCTCGTTCAGGCATGCTCTCAAAAAG
CTCAAGAGCATGATCAACACCGTATGACTTGGCATAACCTGCTAGCATACTGTTCCGACA
AAAAACAGTTGGCCTTTCAATCTGACTGAACTGCTTCGAAGCAAAATCAACAGCCCCACA
TCTCACGAACATGTCGACAATGCCAGTCGCAACGTCAGGGTCGCCCTGGAAACCAAACTT
TGTTAACAACCCAAGTAGCTGCAGCGCCACTTCATGCCACCCGAGAGCGCCACAGGACTT
CATGGCGCAGCCGAAAGTGAAGGCGTTCGGCAAGGAGTCCCCGCTTCGGCGCATGGACAC
GAAGGACTCCATGGCATCCAAGAACCGGCCGCTCTGGTAGTAGCCGGACATGAGGGTGTT
CCACGAGGTGACGTCCCTCCTGGGCATTCTGCCGAACAGCTCCTCCGCATCGCTCAGGCT
GCCCAGCTTCGCGTACCCATTCATCATTATGTTGTGGGTGATGACGTTGGGCTCCGTGAT
GTCGCCCCGCAGCAGGCCTCGGGCGTCGGGGAGGGCTCCGCAGGAGAGGTAGGCGTGAAG
GAGCGTGTTCTGGAGGAAGACGGCGGACGCGAGGCCCACGCTGACGAGGCGGCCGTGCAG
CGCGCGCGCGCCGGCGAGCGC