morexGenes - Barley RNA-seq Database

Contig contig_59001

Source Contig contig_59001

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_59001 (2857 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_59001

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71034	1	429 bp	AK377086	Available	Available	None

CDS Structure of MLOC_71034

Contig Sequence (2857 bp)

>contig_59001 2857 assembly3_WGSMorex_rbca.fasta
TTTTTTCTTGTAAAGAAAAGTGAAAAGCAAATCAAATCGAAAAGTGAAAAGCAAATCAAA
TCAAACGCTATTGTATACTCTTTGATAGATATAGCGCAACCCAAGTTAATCCCTAATTCT
TATTTTACAAGTTCTTAATAGGTCTCTTTTCTTACCCCATTAATGTGTAAGGTTTTCAAT
GCAAACTTTGATGGATATCAAATGGGTGTTCATCTACCTTTATCCTTGGAAGCTTAGACG
GAAGCCCACAAGAACTTTTTTAAGACGTATTAGCCGACCCGGCTTACGAATTTATACCAA
CTATCAAGGAATTCCTAAAGTTTTGGGTGGAATGGAGACACTTAATTTGGGACGTAGGGT
ATTTACATGTGTACATGATGATTTATTGTGATGACTATGATCGGGTTTCGAGTCAAGGGG
TGTGCTTCCAACTTGTATGGCGAGAACACCTACGGGCATGTTGCAACTCGATTTATGACT
TGCAAGTGGGACAACACCTTCTACGAGCCCAGTTGTGATTGAAGTATGGACTTGCAAGTG
AGTCCAAAAAATGGTGAGCATAGTTGTGAGTCGGGGGTGGACTTGCAACTAGTGTGAAAA
TAAAGGATTGAGCGTAGTTGTGAGTCGGGGGTGGACTTGCAACTAGTGTGGAAATAAAGG
ATTGAGCGTAGTTGCAACTAGAAGGTGAACTTGCAACTATGAAAAAACTTTGAGCCCCGG
TGTGGGTCGAGGGTGAACTTGCAACCGAGACAGAATAAAGACCAGGCTGAGTTGCAAGTT
AAGAGTTACTTCGCAACTAATACAAAAAAGTTGGGCCTTAATCAAGCGTAGTTGCGAGTT
GATGATAGACTTGTAACTAATGTAAAAAAAAGGGTCATGCCCAGTTGCAAATCAAGGATC
TGCTTGCAATTGGGTCAAAAAAGGTCGAGGGTGACCTTGCAACTAAAGAGAAAAAAGGTA
GGGCACTAGATCGAGCCCAGTTGCAAGTCAATGGTGGACATGCAACAGACACAACAAGAA
ACTTCAGCCTCAATTACGAGTCGAGGATATATTGAAAACTTGGACAAGTAAAAATTAGGC
CGAGTTGCAAGTCAATAGTAGATTTGCAACTAGGACAAAAAGAAAGTTTGACCCCAATTA
CGAGTCAAGGATATACTTGCAATTGGGTAAAAATGGTTGCCCCCCGCTGCTCCGTTGAAA
AATGTTGCGTGTCGAGGACAAACCTGCAATTTAGGACAATAAAAAAAGAGCTGATAATTG
CATATCGTGGTATGGAGTTGCAACTCGGATAAAAAAGGGTCGGACATCTTAGTTGCATGT
CAATAGAATGCACTTGCAAAAATGGAACAAAAATGGATCAGTCAAAGTTTAGTATAGACG
GATGGACTTGCAAATGGTACACAAAAGGCAGCTCAGCTGCATGCCGGGGCTAGAGTTACA
ATTAAGACCAAAAAAATTCACTTTATAAAATAAAGAATTATAAAAATGCAAAATCATAAA
ATACAAAATGTCAATAGGGTGGCCGACTAGTGAACACCATACATATAATGAGACATGGGA
GTATGGATAGGCGTGACACATAGCCCGTGACCAACATTTGCACAACATTTCGAAACAATG
AGGAATTTAGATGAGACACTTTCCAGTTTGTTTAAAAAGTTCATGGATATAAAACAAGTA
AATAAAGAGGGGGGAAATAAGTAAATATATGAGACACTTTTGAGGTTTTAGCACCGAGTG
TTCTTATCTATTTCATCCGTTCCTAAATATAATTCTTTCTAGATGTTCAACTAATGGACT
ACATACGGATGTATATCGACATATTTTAGATTATTAATTCGTTCATTTTGCTTCGTATGT
AGACGTCTAGTAAAATATCTTAAAAGATTTATATTTAGCTAGTACGGAGGGAGTATGAGA
AATGTTTTTCTCTATAAGGGCATGGCCATCGCTCCAGGGTGGACCGCTGCCTCATGAATC
CACGTCGGATGAGCTGCTGCCGTGGAGGAGAATAGGTAAAAGGCAGTCGCTTGCAGAGCC
AAACGGGCTCTTGCAGAGGAGTCCGCTTCCTCGTTGAAAAAGGCAGAAGGAAAGCACAGA
CCGGAGGAGAGAGGGGAGAAAGAATGAGCTATGAAGTAAAAAAGTAGTGACGGAGAGAGA
GATAGGTGGACCACTAGAAGAGGTGCTGCTTGTGATGGATGTGAGATAATCATACGGTGG
TTTCATTATTATTTTTCTTAGGTGAAGGCTGGAACCACAGCGAGGTGATGCCCCCATGGA
TCATCCCCTAATGACCTGCAATCACTCACCCAGTCCACGTTTCTCTGTGAAAAAAGAACG
TATGTCCCCATCTTCGCCACGTCACGGATCCGCACCACCAGCCTCCCACCGCATCCCACG
TTCTGATCACAATCCAACGGCCCGACTCCACCATCCCACGGATCGACCCAGCACACACCT
CCCGCCTCCGACCCCCAAAATTTCGGGCCTCCCTCCCAACTCCTCCCCATATAAACCGCT
CACCACCGATTCCCCAATCCATCACTAGCTTCAACATCCGCGCCACTCCCTTCTTCTCCC
AAATCCAGCGACGATGTCAGGGCGCGGCAAGGGCGGCAAGGGGCTGGGAAAGGGCGGCGC
CAAGCGCCATCGGAAGGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCG
GAGGCTTGCCAGGAGGGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCG
CGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCA
CGCTCGCCGCAAGACCGTCACCGCCATGGACGTCGTC