morexGenes - Barley RNA-seq Database

Contig contig_58841
Source Contig contig_58841
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_58841 (8424 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_58841

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70957	2	3469 bp	MLOC_70957.2	Available	Available	LOC_Os06g35814.1, FRAME:-1, EVALUE:1e-142, 13106.m03697 protein ras-related protein, putative, expressed
CDS Structure of MLOC_70957

Contig Sequence (8424 bp)

>contig_58841 8424 assembly3_WGSMorex_rbca.fasta
CGGAGGGAGTATATGCTTAAAACCAGTGACGAAATCACACTCCAGCCAAATCACGTTGCA
TCTGATCGTCTAATAGTGAACGGAAGGAGCATTACCGAATGCACATTGCAGTTAACACTT
TCCATGCTCCTCTGAGGAATCGGCGATTTGCAAACGTGAAGCAAATTTCAATCAAGTTGA
GAAGTTCAAGCATGGTTGCAATGGAATGACCTGAAAAACAATACTCCATGCCGATTGCCT
GACCATACAACAATATGAAGGAAGATCTCACCCCATCTAGACAAACATCTCGGTTCAGTA
ACAAACTTCAACTTCTCTAAGTAACATCATAATCATAATACTTGCTACTACTGCTACTAA
TAATTCCCGGTCGCTGGAAAGGCCACATCACAAAAGCTCAGCAACAAAAAATACAACATG
GCGCCTCAGCTAGAGCAGCACCCGCCCTTCTTCACCGCCGAGACATCGTCCTTCATGTTG
ATCTTCTCACCCTTACCAGGGCCGGAGGCCGAGTCTTCGCCCGCATCAACCGCCCTCTTG
CTCACGATGCGGTAAATCTGTTTCAACACCTCCGCAAACGCGTCCTCCACATTGGTCGAC
TCAAGGGCAGAGGTCTCCATGAAATAGAGCGACTCCCTCTCTGCAAACGCCTTCCCTTCG
TCGGTTGGGACTGCCACAAGATGGCGGAGATCAGACTTGTTGCCAACAAGCATGACAACT
ATGTTCGGATCCGTATGGTCCCTCAACTCCTTCAGCCAGCGCTCTGCATTCTCGAAGGTT
GCGTGCCGAGTGACGTCGTACACAAGCAACGCTCCTACAGCACCACGGTAGTATGCGCTA
GTGATAGCACGGTATCTGCGGCAGGATTCAGATCAGAAATGAAATGTTGTAAGTTAAGGC
AGATGTGAACCGAATAGACAACACTCTGACAAGCAGGAGAATTCACTACCTATCAAGAAT
CCTAAAGTAGTCACCAAGAGGTTAAAAGTTTGCAGTAACTTTACATTCATGTGGCTCCAA
CATGGATAATTCAAGCTTTAATTAACGAGATGTAGTCTGTTCACTCGAAGGGTTGCTTAC
CCAGAGACCAAAGCAACATAATTAACAGGAAGGTGGGCACAGAGCCTCAACCCTGATCCA
ATTTTGGTGAGGAACACTCAAATGAAGCTTACTGTACTGACATTGCTTAACTACATAAAT
TTCAGAACTATCATCATGCCAATATTATTTCCAGAAGCATAGAATTACAGGCCAAGAAGT
CATCAAAGGCATTCATATAAAGAAAAGATGGCATGAGATAATTACGGGTTACAAACCAGA
TGATTCCATGCTTTGGTGATCTAGACTTTATACAATAATGCCAATTAACCTATCGGCTCT
CTAACTCCAACCCCACATGGAGTACAGGGTGCCCCAGAAAAAACTAAATAGCATGACAAT
TCCAGCACTATGAGCAAAATCAGGTGAGCCTCAATCTATTTCTTTTCTAGGGCACATTTT
GCACAATTCTGGACTATTGATAGTCCTTTCAATAGAAATTTTCTGCTGAGTCAGTTCCAT
GTTACTAGTACTAGAATAGTAGCGTTAACCCATGCAAATATGAGCAAACAGAAATTTTAC
TATGGCATAGGTTGATTAGGCAAAATGCTCCGCTCTGCTACTTTCATTTTCATTGGTGTA
GCGTTAACCCATGCAAATATGAGCAAAGAGAAATTTTACTATGGCATAGCTTGATTAGGC
AAAATGCTCCGCTCTACTACTGTGATTTTCATTGGTGTAACTTAACCCATGCAAATATGA
GCAAACAGAAATTTTACTATGGCATAGCTTGATTAGGCAAAATGCTCAGCTCTGCTTGTG
ATTTTCATTGGTTGCAGTCCCCAAAAAAATGCAGATTGGAACAACATATATCAAGGTGCT
AATAATCATCTTTGCTGATGTGCAATATTACCAAATTTGGGAAACAATTGAGACAAGAAT
ATAGTTGCATGGATACATGGCTCAACATTTCCAAGTAACCAACTGAGAATTGTAACAATT
ACGTGAGCGCATGATGACTACAGCTTGCATTTCGAATCACAAACAGCAGGGTTAGTTGAG
AAAAAGGATAGGAGCCACAAAATTAACTGCTATTTCTGGTTACTGTGGCATAAATTTACG
GAATAATAACTGAATAGCCAAAGACGAAATATGATAAGTAGTGGATCATTAAACCACTGT
CAAGCTTCATGCCCATATATGTTATTCTAAAATTAGTAAAACTGGAAACAAAAAAAAAGT
ATAATGGAAAAAATAAGGACAAAACAAACATGGATTTCTGGGTGCAGATAGATCATTGAT
AAAGGCCTATCTATCAACAAAAAGAGGTAAGGCATCCTAAAAACTAGTTCACAAAGCAAT
AAATGTGTGGTATTGTTCTTTAGAAGGCCCCAGCCAACAATAAGCATCACTCCTAAAAAT
GGTGTACCAAGGAAGATTCGAATCTGGAGCTAGCCCACCAACCATGCATCAAACAGAAAC
CAAATATGCACGCAATATAGTATCATGATAGTTATGTGGACTTTGAGAACAGGAATCAAA
CATGAGAAAAGTAACAACTGTTATTACTATCAAAATATCAGAACTAACTCCGTTGCCGTT
GGAACCCTGATCTTCACTGCGGTAGCAAGATAAAGCCACACAGAGTATAATCATATAGAG
ACTACACGATCAGAGTGCAGTGAGCTAAATCTACAAGGTGGGCATTTCCATCACCAAATC
ATCTCACCGAAAACACCACCAACAGATCATGCGATTCTAGTTGTATAAAAGTCGTCAAAT
CGTTCAGGCAGTCCCCAGTAGAGTCCCTGCTTACTGATTCGTAAGCAAGCAGCCAACGCT
ACGATCCATTAGCGGGACTGGCTGAACCTACCCCGACACTCCAGCAGGTAGCCGCGCCAG
CACGCCGCATAATTCGGCAGCTAGATCCAACCAAGAAAAGACCCACAGCAGACACTCACG
CTTAAAGGGGAAGCATGCAGCGCATCCATCGGGCTGTGAACGGGGGCAACCATGGAGCCG
AGCGCAGATCTACATACGGCCGCGACGGGGCACAGATCTAGCTGCCGCTAAGCAGGCGGG
GACACGGAGAGGGGAGGAATGAGGCGAGGGGGAGGCGGCGCGTACCGTTCCTGGCCGGCG
GTGTCCCAAATCTGGGCCTTGACGACCTTGCCGTCGACCTGGAGGGAGCGGGTGGCGAAC
TCGACCCCGATGGTGGACTTGGACTCGAGGCTGAACTCGTTGCGGGTGAAGCGGGAGAGC
AGGTTGGACTTGCCGACGCCGGAGTCGCCGATGAGGACGACCTTGAAGAGGTAGTCGTAG
TCGTCCTCCGCCCGGTACCCCGCCGCCATTGCTCTCGTCGCGTCGGCGATCTGGGTCTGG
GGAGCGGCGAAGGAGGAGGAGAGCGAGGGGGGAGGTGGGGGGAGGTGGTGTAAAAGCGGG
GGCGGACGGAGAGGGGGAAAGAAAAGAAGGAAGGGAAGGAAAGGAAGGGGGCACGGGCAC
GGCAGCGGGCGGGCACGGGGAGCGGTGCGTGCGTGGTGATCGCGTCCGCGTGGAGTGCGG
CGAATGGGGCATTTTGGTCGGGTCCGGTCCGCCTACATTTTGGGGGCCGGGTCGGCAGTC
GCTGCAGTCCACCGCGCTGCAGGAGAAACATCCGGAGAAAGATTCACGCGTGCTTGGTTA
TCTTTTTGGTGAAGTCTGGTTCGTGAAGGGGATGTATCTGGTGCACCGGATCCCGTTGCA
CATTTTAAAATGTTTGAAAAAAATATGAAAACAATTTAGTGCATTGACGTAATATCAATG
TATATTATCACAAAAAATCAAATCAAAATTTGAAACATTGCTTGAGATACAAAAATGATG
AATTCGACATTATTATGCTAATGGGCCAAATCTGAAGCCCAACTTGTGTTATGTACCGTT
CAGTGTCGAATTTATCATTTTTGTATCTCGAGCAATGTTTTGAATTTTGATTTGATTTTT
TATGACAACATATATTGATGTTGTGTCAATGCGATAAATTTTTTTAAAACATTTTAAAAT
ATGCAACAGAGGTCCGGTGCACCGGTAGCACTAATTGCCTCGGTGCACCACATACACTCC
CGGTTCGTGAAGCTCAACAGAGCAAGGGTATACAAGAAAAAATTATGAATTTAGTTTGGT
TGCCTGCATATTTTTCTTGTCACCATGGAGTGTAACGAAAGGTAGCATGTTTGGTTGCAT
GTTTGTTGAGGCGCAAACACAAGGTATGATGTTTGGTTTCATCTGTTAATCTCTTCGGCG
AGTGATGATGTTACCAGCACACAACAACGTGTAGAATAACCCATAGACACATAGAATTTA
GTTATAAACCATAGTAAGTAGATTTAAATATAGTGCAACACTTAAACATAACAGTTTTCA
AGTAAAGCAAGACGATATGATACTAAACCAGTTGGAGCATAGGAAGGGTCGTCTTAGGCG
TTCACGGCGAAGGCATTATCCTCCCTCCTGCACTTGGTCACCACTCCAATGTCGTCATCA
TTGAAGATGATGACCTTGAGCGTGTCGGGAGTGAGCAACTTGAAGGTCGCCATGTATCCG
ATCTTGGCCTGATGGACGGTGGCGAAGATTGCCCAACCCTAATCAAGGGTGACCCTGTTG
TTCATCAACCGGAGAGTGACCCTCCATGAGGAGCCGATGTTTGTGTTCAGATTGAACTCC
ATCGACACGGCCTGAAAATGCTTCGTGAAGTCTAGGCCATTGGTACGGCCTCGAGCTTCA
GGGCCATGATCACCTTATAGAAGTGAGTTGGCCCACCGGCCCTCCTCATGTATTGGTCGT
AGTTCCGACGCTTGACGCTGGAGGGCTCCTCCGGCACCACATCGTCGTTCGTCGGCGGCA
CCTGGACGGTCGTCTGCGGTACCACCTCCAAGGGTGGCACCACGTCCTTGCCCTTGTCCT
GCTCCATTGGCAGCACCACCTCCATGCCCTTGTTCTTCGCGTCGGTCTGCATTATGAAGA
GCACAAAGTTCAAAGGTTCATCACCATTAAAATCAATTGTCTAGAGCCCCTATATTTACC
CAGTCTGACGGTCACTACCTACCAACCACCTCACTCAGTTAATCCTCTTTTTTTCTCACT
CTTCCACCTATCCATCGCCATGAACTCCAACAACAACTTCAACCCCAACCCTAACAGCAA
CTCCAACCCCATTCCCAACCATTACCTTGGGGCATTGGATGGAGGGCTTTCTTCCTAGGG
TGCTCGCTCGGTGAACGCACCAAGTTCGAGAACATCATGGAAGTTTGCTCGAACTTCAAC
AACATGAAAGACATGCACAAAGAGTCAGACGTTGTGGTGAAGAAGGCAACATCATAGGAT
TTGAAGGCACTGATTCCTGACCCAGCAAAGGGCGCTATGTTAGTCGACATCCGACCGCAT
TGGGCAGAGGGCAAGGTAGGCCAAGTATTAAAAGTACATGTGTCTTCATGACCAACGTGC
CGCGACGTACTTGACGACAATGTCTGTAGTAGCGTTGGAGAAGGAAGAAGAAGCGGTGGC
GATGGAGGTGGAAGAAGCACTGGCGATGGTTGTAAGGGCACCCGGCCCAAGATACCAAAG
TATGCCAACCGATCTGGACTCCGACAAGGAAGAAGAGACGATGGTCCAGCACGAGGACAA
GAACAAAGCCAAGGGCACCCGCCGCTCCAACCGCCTCCAGGGTCGCCGAACTAAGATCTA
AGATATAAGATTAACCCCAATCCCCAGGCCCCTTGTACTCAATCCGGATTGGGAACCTCG
AGTCCATTGCTACTAGGAACTCATGATGATGTTCCGATCACTCATATGGCTATTTACCTT
GATTCCCCATTCCCTTAACTCAGATCGAATCTAAACGTGGATCGAATGTGAAATAGTAAG
TGAGGAGGTGAAAAAAGTGATTACCGCTATTGCTCAAGTGTTGCGGATGACGTTGCGGAT
CCCTGTCAAGGAGGCCAGAGGTCGCCTTGTTGTTCTCCGATCCGCTGAACGTTGTCGAAC
CCAACGAGGAGCTAAAGGTAGAATTAATACTCTCTCAAGTTCTATCAACCACAGATACAA
CTCTACGCATGCTAACACTTACTTTACCTANNNNNNNNATGAAACTACTTTGCGGGAAGG
AAACTANNNNNNNNNNNNNGGTGTAATAGATAGTTTTGCAAGGTAGCAAAGAACATGAAA
ATAAAAGTTAGGGGATGTTTAGATAAAGATTAATAAGTAAGTTTTTTAGTAGAAAGCTTT
GTGTAACACGAGAGAAAGATTGTCCATAGGCAATTGAATATAACACGATAGATACTTATC
ATATGCAANNNNNNNNNNNNNNNNNNTAACACACTTTTCGTACTTGGATCATGTGCACTT
ATGATTGGAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTAGCATTAAACATCAAGTCCGCTTTACTTCCATGCGCAATCAACTCCATTACTCCGGTG
TAAGCTTCTGTCACTCTAGCCATTCATTATAATTGAATCATGAACATATTGCAAACCCTG
CAGCGGAAATCCCCCACATGTGTGCGGCACGTAAGGCACCATAAGACCGCACCATATTAA
CATACAACTCATATCAATGACACCATACCATAATTAACCACTAGGACAAGACAAATCTAC
TCAAACATCATAGGATAGCCACACATCATTAAACATCATAGGATAGCCAAACATCATTGA
GTAATATATAGCATTAAGCACCATGTTGAAGTAGAGATTACAGCGGGGGACAGAGGTTTT
ACACCGTTGCATAGAGGAGGAGAGATTTGGGTGGTGACGGCGACGAAGTTAGTTGTTGGT
GTAGATCGTCGTCACGATGGTTGCCCCGATGGCGCTCTAGCCTCACGAGGAGAGAGGGGG
AGAGAGCCCCCTCCTTCTTCTTCTTCTTCCTTGGCCTTCCCCCCTAGATGGGAGGACAGT
TTCTCCTCTCGCCCATGGCCGCCCTTACTCCCGGAGGGCACGAGCCCCTCCGAGATTGGA
TCTCTCTCTGTTTCTCTCATGTTTTGGCTCCTCTTTTCTAGCACTTCACCGTTTCTTAAA
TATATGGAGATCCATAACTCCGATTGGGCTGAAATTTTGAAGGGATTTTTACCGCTAAAA
TATCTTTCTTGCAGCAAAATTAGGTCTCCAACCGACTTAAGGGGGAGCCACAAGCTATCA
GGGCACGGCCACCCCCCTCGCCGCGTCCTGTTGGCTTATGGGGCCCTCAGGTACCGTTTT
GCATTGATTCTCCTTCCCAAAATTCACATATATTCCAAAAAATCTCCGTAAATTTTTATC
GCGTTTGGACTCCATTTGATGTGGATTTTCTACGAAACAAAAAACACACAAAAAAACAGA
AACTGGGCACTGGTTAAGTAAGTTAGTTATCCCAAAAATAATATAAAATGTTGCCGAAAG
TATAAAAAATTTGTAGGATATTCCCATGAAACAATCAAACACTATAGATACGACATAGAC
GTATCAGCATCCCCAAGCTNNNNNNNNNNNNNNNNNNNAGTAGGTAAATGATAAAAGATA
TTTTTTTTGTGTGAAATGCTACCTAACATAATTTTGAACAAATGTATAACTATGGCATGA
ATATTAAGATACAAGTNNNNNNNNNNNNNNNNNNNNNATTTGACAAAAAGACATCCATAC
TCTAGTTTATTAGCAAACAATCATGTCCTTTCAAAATAACAATGCTAAAGAACGACATCA
CTGCAAAATCATATAACCTTTCATGCTTGGTCTTCCTAGCATAAGGTATAAATCATGAGA
ACCTCGGTGTCAAACCGAGCAATTGGATCGTACTTCTTAACTCATTTCAACTTTTTATTA
CTCACTCAATACATAAGCGTGGGCCATGGACATAACATATAGGTGGAANNNNNNNNNNNN
NNNNNNNTCAAAGTGGTAAAAGTGGAGAAGAAAGTCTCACATCAACTCGGCGTATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATATCAATGCGAGGAGTAGGGATTCCGTGCAACGCA
TGCACTAGAGCTATAAGTGTATGAAAGCTGGACTCAAGCTAAGTGGCTGATACGTCTCCA
ACATATCTNNNNNNNNNNNNNNNNNCATGCTGATATATTATCATTATAGTATGTTTTTGG
AGTATTTATTTACCATTTATTTTATTTTTTAGCACGAACCTATTGACCTAGTACCAAGTG
TCAGTTGTTGTTTTCTGCGTATTTTTTACTTTGTAGGTTTTCTATACAAAACGAGGTCCA
GTTGCGCTGAAACTTTTTGATGATTTTTTGTGGACCAAAATAAGACCAACGAGCATCTAA
AAAAGGTTGGAGGCCTCACGAGGG