Map Locations of contig_58727 (9960 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_58727

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70877 3 1948 bp MLOC_70877.1 Available Available LOC_Os06g51110.2, FRAME:+2, EVALUE:0.0, 13106.m05507 protein cyclin, putative, expressed





CDS Structure of MLOC_70877






Contig Sequence (9960 bp)

>contig_58727 9960 assembly3_WGSMorex_rbca.fasta
ATGACAATGGAAGTACAAGTCATATAATGTGATGGTGAAAGTTGCAAGGCAATATATCTC
GGAANNNNNNNNNNAATGCTATGATAGGTAGGTATGGTGACTGTTTTGAGGTAGGTATAA
TGAGGTTTATATACAACACGGTGTATCATGTCACGGGTTTTGGATGCACCAGCGAAGGTT
GCATCGATCCTCAAGGTGAGAATGGGCAATGTACGATATCGAAGAGGCTAGCAAATATGT
GTAGGTGAGAGTGTGTATATCCATGGNNNNACATTAGTCATAAATAAATCTCATACTTAT
TGCAAGATTTTATTAGTTCCGTCGAAGCAAATCACTATTCGCATGCTCCTAGGAAGGAGG
CTGGTAGGGGTTAACCATCGCGCGCCCCTCACTTAAACAACACTAGGATTTCAACAATGA
ATAAGTATGCTCACACATCGTCACCATGCTATAAACATATTTAGATGAACAACAAATTAA
CACCCTCTAATTTATGATATTTATATTAACCAATGATGATGCACTCACGCTTTTTCACAT
TACCACATTAATANCATTAACCATGATTTCTCTTTTATGCGCTACATGTGTTTTGATTAT
GCACTCACTGAATACCTATTATTTTTGGACTAGTTTTATAATCCATGCAAATTACCGTCT
CTATTTATTAACTCCCAAACAAATATNNNNNAAGAATGAGAGTGCAATTATTTCTTTATA
ATCTATATACCACCGTGCTCTAAAAGATATAACTGAACCACTAGAGCAACTACTAAGCTC
AAAAGATATAAGTGGAGCACATAGAGTATTCTAATAAATCAAGGTGATCTCGTGTCTCTC
TCAAGCGGGTGTATTCAGAGAACAATGATTGTGGAAAACTAAAACAACAACAAACTAAAA
CAAATGAGCTCCAAGAAGAACTCATATCATGTAATGAATAAAAATATAGCTTCAAGTGAC
ATACCGATGTATCGAGACAAAAGAGGGGATGCCTTTCGAGTCATACCCAAGATAAGACGC
TTGAGTCTTCCTATAATATTAATTGGGGTGCCTTGGGCATCCCCAATCGTAGGCTCTTGC
CACTCCTTATTCCTTCATCCATCGTGATATCACCCAAAACTTGAAAACTTCAGCACACAA
AACTCAACATAAACTTCGTGAAATCCGTTAGTATAATAAACATATCGGGTACTTTAGGTA
TTGTTATAAATTGATTCATATTTTATTATTGTGTAAGGTACTGTATTCTAACTTCTCCAT
GACTTATACGTCCCGATACAATCTATGGTATAATCAAAACAAGCAAACTATGCAAGCAAA
AGTAGAATCTATCTAAAATAGAATAGTCTATAATGATATAATTAAGTACCATACTTCCGT
AACTCAAACATTTCTGAATAATTGTAACAAAACTTTGTAAAAAAATCGGTCAAAAATACG
TTCCAATAAATCAGAGAAATTCTGCATTGGACGTCAAAGTTTCTGTTTTTGCACCTTATC
AATTATACCATCATTCAAATCATCCCAAAGGCTTTACTTGGCACGAACACTAATTTAAAC
ATAAGACACACTCATTACAGAAGCAAAATACATGTTATCACACACAAACATAAAGTAAAA
ACAAAAACAAATTAAGATAATATTGGGTTGTCTCCCAACTAGCGCTATTGTTTTACACCC
CTAGCTACGTATAATGCATATGATTCAAGTGTTTTCATCTTTGACACACCACCCAAAAGT
AGACTTCATGATAGATTCATAAGGTGGTTTGATTCTCTTTCTAGGGAAGTGTCCCATCCC
TTTCTTTAATGGAAATTGAAACCGTATGTTTCCCTCTTTCATATCAAATAGTGCACCTAT
AGTTCATAGAAAAGATCTCCCAAGTATTATTGGACAAGATGGATTTCATGCAATATCAAG
AACTATAAAATCTACAGGAACATAATTTCTAATAGGTTGGTGATAATTAAGATGCATATT
AGAAATTATGAGAACATCATTTATTCTCCCCATAGGTTTCTTGATAATAGGTTGGTGATA
TTCCCCAGCAACGGCGCGAGAAATCCTGCCTGATACTTGTGATCTGCGTTGGNTTTTCCG
TGAAGAGGAATGGGTGATGAAACACAGTACGAATAAGTATTTCCCTCACTAGAGAACCAA
GGTTTATCGAANNNNNNNNNGTAACAACCAACCCCCGTCTTCAACGACTACAGACAAAGA
AGCAAACACTTGCACCCAACGCGGGTACGAGGATTGTCAATCTCCTTGGACTCGTTATTC
GCAAGCAAGTAAAGTGTGTAGGTGATAATTGACAATTGCAAAGTAAATATAAATTAAATA
AAGGCAGCGAGCTAATTGTAGCATTTTTAAACTTATAAGTGAATAGACCCGGGGCCATAT
TTTTCACTAATGACATCTCTCATGTAGTGGGCATACATTGGATAAACAGATTGTTGCTGG
GCAATTGATAGAAAAGCGCATANNNNNNNNNNATTCACGACAATGATCATATATACATAT
AGGCATCACGTTCATAAGCAAATAGCCCGACTCCTGACTGCACCTATTACTATTACATCA
ACCACTATCCAACATGCATCNNNNNNNNNAAGTAAAACAGAGTAATGCTTGGAGGGCAAT
GACATGAATTAACCCCATTGTTTTATACTTAGTGGCAACAATACAAAGATGTGTCCTTGT
CCCTTTCTGTCACTGGGATATAGAACTCCGCCAGATTGAACCCACTACAACGTACCACTC
TCACTCAAAAAATATCAATCTAGTTTGCCAAACTATTTCAATGGATCAGAGAGATTTACG
AAGTTATAATAATCATGCATATAAGAATCATAATATAATTCACAAAAGACTCGAATCTTT
ATCATAAATAATATGAACATAAACCCACAATTCATCAATCCCAACATACACACCGCACAA
AATAATTATATCAGATAGATCAAAGCNNNNNNNNNNTGATCATTGTATTGAAGATCAATA
GAAAGAGAGAGATGGCCATCTAGGTACTAACTACGGACCCGTAGATGTGTTGTAAACTAC
TCACACATCATCATGGGAGCAACAAGGTCGATGTATAGGCCCTCTGAAACGGTCGGATTC
CAGATCCATCACCAAAGCAAAACGAACCGCCTGCCGCCCCTCGGTCCCATCCCACACGCC
ACCCCACACCGCGTGTTTTCGCCCATGCGCCAAATACAAACCACGCCAACAAAATCCCAT
TGGTGTCAACAAAAGAAGAAAGAAACAAATCTCTGTGTTTCCCGCTGCAGTGGAGACACC
AGTTCAACGTGCCACAATGTGTCACGTGGTTCAACGTGAACCAAGTACAAACTACACCTA
CGAAATCCCAGTTATTTCAATAATTTAATTAAAACTAAGGAAACAAACATGACACCCTAT
CTATATATGATGTGACAACCCTCTCTATATACGGTGCGACAATCCTCCAACGATCAAATC
TTAGACCCATCACAGGGTAAAACAAACCCCATCGTCCCTTGGTCTAACTCATGCCACGTG
TCCTGCCGTGTCGCGTGCTTCAGTGCGCCCCAAATACAAACTACACCTATGAATTCCCAG
TCATGCCAATAATTAAATAAAAAATAAGTAAATACACATGGCACCCTATCTATCTATGAT
GTGACAACCCTCTCTATCTACGATGTGACAACCCTCCAACGGTCAAATCTTAGACCCATC
AGAGGGTAAAACAAACCCCATCGTCCCTTGGTCTAACTCATGCCACATGTCACGCCGTGT
CGCGTGCTTCGGTGCGCCTCCAAAACAAACTACACCTATGAATTCCCAGTTATGCCAATA
ATTAAATAAAAAATAAGGAAATAAACATGAAACCCTATTTATCTACGACGTGGCAACCTT
TCAACGGTCAGATCTTAGACCCATCACACGGTAAAATAAACAGCTATTGTCCTTTGGTCA
AACTCATGCCACACGCCACGCCGTGTCGCGTGGTTCGGCACACATCAAATACAAACTACA
CCTATGAAATCCCAATTATTTTAATAATTAAATTAAAAAGGAAACAAACATGAGACCCTA
TCTATCTATGATGTGACAACCCTCGAATGGTTAAATCATAGGCCCGTCATAAGGTAAAAC
AAATCGGCCACCACCCCTTGGTCTCGTGTCACACGCCACACCGTGGCACGCGGTTCAAAT
ACAAACTACACCATAAAATCCTAGTTATTCTAATAATTAAATGAGAAAAGAGGGAAACAA
ACATGTCACCCTATCTATCTACGACGTGGCAACCCTCCAACGGTCAAATCGTAGACCCAT
CACAGGGTAAAACAAACCCATCGTTCCTTGGTCTAACTCATGCCACATGTCACGCCGTGT
TGCGTGCTTCGATGCGTCTCAAATACAAACTACACCTATGAATTCCCAGTTATGTCAATA
ATTAAATAAAAAACAAGGAAATAAACATGACACGCTATCTATCTATGATGTGACAACCCT
CTCTACCTAAGATGTGACAGCCCTCCAAAGGTGAAATCTTAGGCCCATCAGAGGGTAAAA
CGAACCCATCGTCCCTTGGTCTAACTCATGCCACATGTCACGCCGTGTCGCGTGCTTCGA
TGCGCTCCAAAAAAAACTACACCTATGAATTCCTAGTTATACCAATAATTAAATAAAAAT
AAGGAAATAAACATGAAGGCATATTTATCTACGACGTGGCAACCCTTCAACGGTCAGATC
TTAGACCAATCACATGGTAAAACAAACCGCCCACCGTCCCTTGGTCTCATGCCACACGCC
ACCCCGTGCCGCACGCCTTCGCGCACATTAAATACAAATTACAAATATAATATCTCAAAT
ATTCTAATATTAAAATAAAAGAAAATAAGGAACGCAGCGCCGCACCGTGCATTTCCGCTC
GCGCACCAAATACAAACAACACCTACTATATCCCAGTAATTCTAATAATTAAATAAAAAA
AGAAGGAGACAAACACATCACCCGTCTATCTACGACGTGGCAACCCTTCAACGGTCGAAT
CCCATACGCATCACCAGGGCAGAACAGGCCGCCGAACGTCCCTCGGTCCCGTTCCACACG
CCACCCCACCCCGCGCCGCGCATCGAATACAAACTACACCAAAGAAATCCGAGTGATTCG
AGTAAAAGAAGAAAGAAACAAAGACGGGCACCCAATCCAGCCATCTACATCTATCTTAAA
GCTGACGCCACATTCACAAGAAGGGAAGATAATAAAGCCCGTTTTGAAAGCACATGCGGT
GGAAGGGATCCCCCCTAGCCGTTAAGGCCAGCCCCCGCGCGCCCCCGGCCGTCCGACCCG
CATCCGACGGCCCAGATCGCACGACCGTTGGGGTTCGAACGCGTCCAGCTCGGGCAGGCA
GGCCCCTATTTTATCTCACCCCTGCCTCCCCCCGATCCCAAATCCCCTCCCCATCTCCTC
CTCTCTCCTACGCTCTCCGCTCCGCTCCTCCCCTCCCCTGCAGCAGCCGCGGCGGCGAGC
TACTCCCTCAACCTAGGTAGAGCCAGGGAGAGAGAGAGAGAGGCGGCGGCAGCTTCTCCT
TCTCCGTCGACCTCATCTGACCAACGAGGTCCGTCTTCTTCTTGGATCGGTGGATGCGTT
CTTGAACCGGGTTGACGGGTCGTTTCTTGCGTTCTTGATGGGATGGGATGGGATTCTTTG
GGTTTCTTGCCGGATTTGGCGTTGCGAGCTCTGCCCCCCTCGGATCTCCGGCCTGGATGG
ATGAATTCGGGGGGAGGCGCTAGCTCAGAGCTCAGACCGCGCGATTCCGTTCATGGCGTA
GGTTCTTTAGCGTTCTTGGGCCGGATCTTTCGATGTCCCGGTTGTTCTTGCTTGCGAATT
CGAGCCGCAGATCGGCAAGAAGCTCGATTCTTGGCGGCCAGAGAGTTCTTGCTGCTCAAA
CTTTCCTTTTTTGGTTCGGCCCGTGCGGGGGTCTCTTCTTGGATCTCCCCAGCGAGTCCG
GGGAGGCCTGAAGCAGAGTGGCTGGTCCAGTAGCGCGTTCTTCCTCGTTTGGGTCTCGGA
TTCGCGAGGTTTTAAATCGGTTTCTTGGCCAAATCCGGAGTTCTTGCCTCGTCCCACGCG
CCCGATGAGGAATTTGAACCAAAAGATCCCGTTTTTCTCCTTGTGCAGATGCGTTTCCTC
TGTTTCTGAATTTGGATTTCTTTCCTCGTGGTGCAGGGTTTCCGGCCGTCGCCAGTAATG
GAGAACGTGAGGTCTTTGAACCACAGGGGCGCGGCTATGGAGGGCGTCAAGCTGGGTTCG
GAGGCGGCGGCCAACACCAACCGCAGGGCCCTGAGGGACATCAAGAACATCCTCGGCGCC
CCTCATCAGCCCCAAGCCGTCAGCAAGAGGGGCCTGCAAGAGTGAGCAATCCCCCGATCC
ATGACCGAATTTCGAACTCCAGCTCAGTTCCGCCTGTGATTCAGAACTGGATCTCTAATC
GCTCCGAGTTTCCTTCCATGTTTCAGAAAACCAGCCGCCGCCGGTGCCAAGAGCCAGCCT
GGCGCCGTCGGTCACCGGCCGGTAACCAGGAAATTCGCCGCTATCCTGCAGCAATCGCAG
CCCGCAAACGCCCCGCTGGTATGGGCAATTAAAATCCTTGCTGTTCTGATACTGCCCTGG
GTGTGCATTGCTGTTCTTATCTCTGTACTTTCCAATCGTGCAAATTTTAGGACCTGTTTG
GGTGAACTTAGATGCTGGGAAGTGGATCCTGAATGCACTTTGCGTTTGCTATATTCAGAT
TTGCGCAAACAAAGCTCACTGTAAAATAAATTCTGTAACTACGTACTGTTTGAATTAATA
AACCTGAATCTGCGGATTTGCACATACAGATCTTCAGAGATTTGAGCATATCAAATCTTG
ATATATGCACCGTACCTTCTTTGCTGAATCGATGTAGTTCTCATATAAGTATGGTACTGT
AGGTTTAATGTTGTCTAGCAAGTTTAGGCAAGTAGTATCATGAATGTTTTAACTGAATTG
GGTGCTCACTTTTACATACATATGGTATGATATTAATGTAGGTTCAATTGGGTTAGCTGT
CCATCTTTTGCATCCCTTGCTTTTATTGCACTCAGATTTAGTTCAGAATGTATATCACTT
TACATTGTTTGAACCAAGAATCTGACCGAAATAGGTAACTGTCAACTCAAGGATTTGAAA
TTGTTTGGCAGGCACCAAGTGGCAGTGAGAGGCAGAAGAGAAATGCTGACACCGCGTTCA
ATGCTCCTTCAGACATGGAGGCTTCAGATGATGACCTTGACGAGATGGTAAGCAGAGCAA
CGCAACTATACCATTTCACGATCAGCACGAGTTATCTGCCATTTCGGTGCTGCTTTCGTG
GCTCATCATCCATGCTTTGTTGTTACTCCAGATGACAAATGAGCTCAAGGAGATCGACAT
GGAAGAGGACACAGAAGAGGAGGAGGAAATGCCTGACATCGACAGCTGCGACGTCGGAAA
CTCCCTCGCGGTTGTGGAATACCTCGATGAAATTTACAGCTTCTACAGGAGAACCGAGGT
AGCTATCTGCTTGCCGAATTCTCTGTGCTTTAGATGCTAGCTAGAGTTGTGTGCCTGACC
TGACCTGACCTGGTATATGGTAGTACTAGTAGTCTCATTGCAAAATTCTTTGTGCTGTAG
GAACTGAGCTGCGTGTCACCCACCTACATGGCACACCAATCTGACATCAACGAGAAAATG
CGCGGCATCCTGATCGACTGGCTGATTGAGGTAGGATTTCCATTCGATGCTCGGTGGTCT
CGGCAAAGTAGTCTTGTTATCTTTAGCATGCTCTGCAATGGAAAGTTCTAAGAAACTCCA
ATGTCCCACTGTCCAATGCAGGTCCATTACAAGCTTGAGCTACTGGGTGAGACCCTTTTC
CTTACTGTGAACATCATTGACAGATACCTGGCCCGGGAAAATGTCGCCAGGAAGAAGCTC
CAGCTTGTTGGCGTGACAGCCATGCTGCTGGCATGTAAATATGAGGAGGTCAGTGTCCCG
GTTGTGGAGGATCTGATCCTCATCTGCGACCGCGCCTACACCCGGGAAGACATTCTGGAA
ATGGTAACAATCCTGTTATACACACACCTTTCGTCGATTCGAATCGATACGGGTTCTTGT
TTTGTCTTCGGAGAATTGACACTCGCATATGGTAATTCTGCAGGAGAGGATGGTCGTCGA
CAGGCTTGAATTTAACATGTCTGTTCCTACTCCATACTGCTTCATGAGAAGGTTCCTCAA
GGCAGCAGGGTCTGACAAGAAGGTAAGAAGATCACAGCTCACCTTGGACTACTAAGCATT
GCTCTGTTTTGTATGTGTACCATGAGTGCATTGCTTGCCTGACACAAATGGTGCCGTGTT
CTGAATCAGCTGGAGCTGCTCTCCTTCTTCCTGATCGAGCTGAGCCTGGTGGACTACAAG
ATGCTCAAGTTCCAGCCGTCGATGCTGGCGGCGGCGGCCATCTACACCGCGCAATGCACG
CTGCACGGGTGCATGTCCTGGAACAAGTGCTGTGAACTCCACACAAAATATTCTGAACAA
CAGCTCAAGTATGGAAGCACAACATTGTCTATCATTCAGACCAACCAACTTTCAGTGAGT
GATGCCTTTGTAGTTTGTACTCACGCAGCTGTTTGGCTCGCTGGTTTTGCAGGGAGTGCA
GCACGATGATGGTGGAGCTGCACCAGGGCGCGGCGGGCGGGAAGCTCACCGGGGTGCACC
GCAAGTACAGCACCTTCAGGTACGGGTGCGCCGCCAAGTCGGAGCCCGCCGCCTTCCTGC
TCGACGCCAGGGCCTGACCGACAACTTACGTCGCCGTGTCCCGTAACAAAACCGCTAAAG
AAGAAGAGGTGGTGGTGTACATTGAGGGTGCTCTGTTGTTCTCTGATGAGATTTACACCA
AGGAAGAAAGGGAGACCAACGTTTCGCTGTTGGCCGCGTCGCGTGAGTTTTTTACTTGCT
CTCTCGGCATAACTTAACATCGATCCTGTCCGAGTTGAGTCGAGTTGCGTTGTGTGTTGT
TGTTGATGGGTTCTTCCAATTACATGTGTTGGAAATGTGTTGTGTATTTAATTCTTGGGT
TTGTTTGTGCGATGATGACTGCCTGCAAAACAACTTGCAAATAAACATTGATTGAATTTC
CTTCCTCCCAATGTGGTTCAGCATATTTACCCCGCAAAAAAAAAAAAAAAAGTGTTCAGA
ATCTTTGATTGCTGATCTTGTCTATGTAGCAGAATCTGTTAATCTGTACCTTGGTTTCAA
ATTCAAGTTTGTATGGCTTGTTCAGATGTGGGAGGAACCTGAAACATGCGCTGTGAACTA
CTCTAGTAAGTACTAAGAAGCCTCACTTCACTTGATGCCAAATTCGAATTTTCTGCTAGC
AAAATCTGCAAATTATGGTCCCAGAATTAAAATTTGGCATGGGGGGCTTGTCCCAGAATT
TTGAACTTTGGCCTGTTCTTTGCTTTGAACTTTGAACTAGGACCTAGATCCAAGTAGTGT
TGTCACATTCTTCTGTACTAGGTACTAGAACCAAGTAGTGTGGTACTAGAAAATGTGAAT
AAAAGGGCTAAGATCTGGAATGAAGAGGTGTGAGATTGCAAAAAGGTCTTACATTATGGG
ACGGAGAGACTAGTTTGACTTGGGGGAAAACTTGTACTAGCAGTAGTGTAGGAGTTGTAC
TAATTCGTAAACCTGTCAAGCCTGTAATGCAAGATCTGGAATGGCAAAGGAAAACTAACC
AACCTCCCTTGAGTTGGTTTTCGCCCCCTCCTAATCCTAATGTGATCTTGCCCTCAGGGA
CGGAGCCAGCATGTAATCATAGGGAGGACAAGTTTGTTCACGAAGGGGGCAAAGTTCAGA
TGAAGTAAAAATTTTTGGCTACAACAATCAGTATTATAGTAGAAAAACCCCCTTCCCCCC