morexGenes - Barley RNA-seq Database

Contig contig_58650
Source Contig contig_58650
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_58650 (9260 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_58650

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70834	3	1785 bp	MLOC_70834.1	Available	Available	LOC_Os07g37040.1, FRAME:+2, EVALUE:6e-111, 13107.m03807 protein PB1 domain containing protein, expressed
MLOC_70835	1	1117 bp	AK357031	Available	Available	None
CDS Structure of MLOC_70834

CDS Structure of MLOC_70835

Contig Sequence (9260 bp)

>contig_58650 9260 assembly3_WGSMorex_rbca.fasta
CATGTATTTGTGTTTTCATTCAATACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAGGGCATATTTCCAACAATCTA
TCTCTCTCTACTGCGTTTAATCCCGTTACTAGCAAGACAAGATTCTTGGCAACCATCTTG
AAGTGATGGGTGCAAGTTTCTGTTTGTTTGTGTGCGCATGCTAGTGACCTTGCTATCTTG
GGAGACTCCTAGTGGATTGATAACCTTGATTCTTAACTGAGGGAAACACTTTGTTGTTGT
TCTGCTTCACCCTTCCTCTTTGTTTAATCCCAACAACTCTTAGGGGAGTAAGCAATCACG
CACTTCCTACTTCTACACATCTAATAGGAGGGTCTCTTTCTATTATGCCCTTGTAGCTCT
TTCTGGTGAGCTTGCAAGGTTGCGAATAGAGGTTTGAGGGACCTTGTTAGGCCCAAAATA
GTCAAGGGTGATGGGACCCAGGAAGCGGAGACACTTTGAGTCTCCCATGCGATGGGCACT
ACCCTTGGCCACTTTTGAGAGTCACGAGACTCTAGAATTGGTTGCTCCCTAGGTGCTCCC
TGCGTTGTACACCACTCTTGATTACCCCCTCCGCATAGGGTGAGGTCGTGCTCCCTCGAG
ACGACCGAACCTGTTTAAAAAACATGATTGTGTCACTTTGTCAAGTGTACAACGACCTTC
GCTATAAGGCCTTGGTACACACCTCAACCAACTCATACTAACCACGCTACAAGAAGCACC
TCCTATTGATTGTTGATTTTTAAACTTCAATAATCTCGTAAACTAGAGCCCCAAAATAGT
CTATCGGGCTAGCACCAATTTCTCATTCCTAAAATAATGCATCAAACTCTCGTAGTAGCC
CTAATTTTACAGGTAACCAACATGGCCCCTTTAGCTATCCCTGGTTCCACCTACAACTAG
TACTTCATCTTCGTCCAACACAAGCTCGTTGCCAGCGTCATCATCTTATAGACTACATCA
ACATCTTTTACCCCCCATGTCATTTGATACTCGCACCTTTACAACACATTACACCAGTTA
CCTCATATCTATTCGTCTTACAACCAGTGCAAATCTATAAGGAGGGTACAAATCTATTAC
CCCACTCAAAGGCCTGAACCCGAGTAAATCTTTTGTGTCGGCGCTGTCATCGACGAGATT
ATTTCTAACACCACCATCTCAATATTATTCTCCGTAAATCCTCGTTCGATCATATAACCA
TGATCAAGTTTTTTTTGTGTGCGATGACAACCACAATCTAGTTTCACTATGATATTTCTT
TACCTACTAATAAAGCATGGATAACTTCTATCCGTACGTCATCGAAATTGCCCCCGAAGA
TGGTCAAAATTACCCATCAATGCCACCCGCAAGTCAAAAAATGATTCAGTTTTCTCTTTC
ACCGGCCCGCACGTATTATCTGAAACTATGCCGCCATATTATGTCCATAGTGAAGGACTA
GCANNNTGGAGAGAGCCTTGCTCTTCTTAGCTGAAGACCCATGTTTGATTCCCTCTTCAC
TCTGTTTTTGCTTTTGCTTTTTCACTCTCCAGTCCCTGCCCTGCTCACTGCCGCTAGATC
ATCTCCATTCTTTTTTTCCTTTTCTCACGCTACCTGGCCAGAAACTAAAGTTGATCCAGA
AAAGCAACCAGCGAAACTCCACATCAACCACAACCACGAGAGCTTAAATCATCGACCTCT
TCCTCATCCTCTCTGCCTGCCCCACAGCACAAACGTTCCTCCCCTCCTTCCCGTCTACGT
ACACAAGCAGCTAGCACCAGCAATGGTAATTGGGTTTGGCACATGATGTGCTGCTTGCAT
GTGGATGATGATTAATTAACTGCATGCATGAGATTGCATGGCAAGTTGCTCACGGCTCTG
TGCAAACACATGCACGTCTCCGGCGGTGGCCATGGCGGCTACAGCGACGTCGACGATGCG
GTCGCCTTCCGCGGCAACCCAGTGGACAAGTCCAAGACCGGAGGATGGCTCGGCGCCGGG
CTTATCCTAGGTATGCATACGTCCGCCGTCATGTGCGCCGCAGCCGGAGCTTTTGTAAAT
GTTTGTGCCGGGTGGATCGGATTATTATTGTATGTTTTCTATAAAATATTCTTGAAATTC
AGAATAATTCTTTTAATTACCAAGATTTTTTACAACCATGATATTTTTTAAAAAATGTAA
AGCTTGCTTCAACTTATGAATACATTTAAAAGAAGAAATATTTTCTTGCATTTACGCATA
AAATTTTAAAATCAAGGTATGATGTGTGAACATAATGTGATCATCATCATTAGAGATTAT
AATTTTTTTTTCTCCCGTTGCAACGCACGGGCCCTTTTGCTAGTATATATTAAAGAATAT
AAAAAGAAGATTTTCTTCAAGATAAACTTCCATTATCTCCTAGCAAGCCAAATGCTATAA
GGTACAAAACTGCAAGAAGACCCGGAATCTAAATGCTTGTTTGGCTTCATGGTAGATTCC
AATGTCAATTGGTTTTCACGACGATCGTGACGCTTATTTGGACAAAATGTCACCTTGGAA
CTTTTTATCGTTTTGATTGACTTGCTCTTGCCTCACCCATATATTTTGGTTCCACCTTCA
TTTTCAAAGAATCCGTGGAATGGAAACTTTGTTTCAACAGCCCTCCGAGAACCGAACGCC
TTCTGTTGTGTGTGCGTGTGCTCTTGTTTGCTGCGACGGATCTGTGACTCTGAGCGTTGA
ACTGGTCATGGAAAATTGGAAATTAACCAAAGGTCCAAAGCCGTCGGTAAACTGGGCCGG
CGTGGTCTCGGCCGCGCAATGCGTCACGCGGCCCGTCCGCCATATCGCGCGCCGAGCAGA
GCAGTTGGCGCCTGTTGTGCGTGTGTGCCATGTCATTTCTGATTTCGTAAGCACAAAGCG
AACGCAACGCGAGAAGCAGAAGAAGATTTGTTCGGAAAAAAAAGCAGAAGAAAAGGAAGA
AAAAGTTACCCCTCTGGTGTACCGGTTGCATATTGGACGACGGCTCGTGCTCGTCCAGCC
TTTTCGCCACGGCACGGTTCAGAATTTACGAGGTTTGGTGGAACGACGGGATCCCTTCCC
AGCTTTTAGTTGGGAATATATTAGCAGCAGAAAAGATTGGGGGTACGGTACTGCTGCCGG
CATTGGCGTCCATGTCGAGATCCGTGAGAGCAAGTACAATAGCTGCTGGCGTGTCAGGTC
ATTTATAGCTTACCTTGTAGTCAATATGTACAATAGTTCATTGCAAAAGTATACTACTTA
TTTATTGTATGGTTCACCTTTCATATTCATAAAATGTCTAGAATCACGTGCTAGAGCTGA
CTCTTAGCTAAGAGTCAGCTTACCTTCTCTCTCTTTTTCTCTTTCCTCTAACTAAATAAA
AATATATTAGTTTATTCTTTATAACCGGCTGACTCAGCTCTATTATAAGAACGGAGCACT
CCTACCAGGCCTGTCGTTTCCCTAGGGCTTTGTGCAAGATCAGGTGACGGAATGTCTCTC
GGATCAATTATTTTGTCCCTTACCGGGTCCGGGTCTGGGCTCTTGGATCATCCATCAGGA
ACCCAAAGATGCGCCCCTACACCTACACATCGCATTCGCACGCGTTGGAGAAAAGCGCCA
TAGGAAAGTTGTAAGCGCGGTTTTCCCACTGGCAATGAGAATCACCATTTACCATAGCTT
GAAAATTCAAAAATTCAAAATGCAGTAGTAGTAGCAGTAGGACGGGAAAGGAATTACTAG
TGCTCGGGTTTTGGATCACAGCTAGCAAATGGGCCCAGCTTCGCCCGACCTACGATCCAA
CTAGAAAATCCGCCCCTGCTCTCCTCCCCACCCACATCTCTCTCCTCCCAAATCCCAATG
CCCCCTCGCAATTAACACCTCCTGCGGCGGCAGACAGCCTGCCTCCACCCCCGCCCTGTC
ATCGCCCTCCGGCCTCCGCCCACGCCGCCGGCCGGCGCCCATGACGTCATCCGCGTCGCA
CCACCACGACGCCCCCTCGGCCACCTCCACCCCCCGCGCCGGGGCCGGCAGCACCGGCAG
CAGCAACGGCAACGGCAACGGCAACGGCAACGGAGGCCACCACCCGCCTCCTCCGCGGGC
GCAGGCGCAGGCGCACGGGGCCCCGTACGTGCGCCTCATGTGCAGCTTCGGCGGCCGCAT
CCTGCCGCGCCCGGGCGACCACCAGCTCCGCTACGTCGGCGGCGAGACCCGCATCGTCTC
CGTCCCGCGCACCACCTCCCACGCCGTCCTCTTCGCCGCGCTCGCCAAGCTCGCCCCCGC
GCTCTTCGTTCCCGGCGACCCCACTCCGGCGCTCAGGTACAAGCTCCCGCACGACGACCT
CGACGCGCTCATCTCCGTCTCCTCCGACGACGACGTCGACAACCTCATGGAGGAGCTCGA
CCGCGTCCACAGCCTCGCCGCCACCGCCGTCAAGCCGCCCCGCCTGCGCCTCTTCCTCTT
CGCCGCCTCACCAGATCACTCCTCCGCGGGCGCGTTCGGCTCCGTGCTCTCCGGTGTCGG
CGACGCCTCCTCCGACCAGTGGTTCGTGGACCAGCTCAACGCCCCACCGCCCGGTTCGAT
CGAGCGCGGCCGATCCGAGGCCTCGTCGGTCGTCTCGGAGGTCCCGGACTACCTCTTCGG
CTTCGACACTACCTCCGAGGAGCCCAGCCCCGGCGCGGGTGCGCAGCCCAAGTCTGACGC
GGAGATGGCGCAAGGCGACGACGACGACGCGCCGGCTCCCGTGCTGGGCGCTCCTCTGGC
CCCATACGTCGCGGAGAGCGCCCCGTGGCCGGCCCCGCCGCCACCGTACATGGCGCAGCC
GGTGTACTACGTGCCTGTGCGCCCCGTCCACTACCTCGACCCGGCTGGGCACGGCGGCTA
CATGCCTGGGCCGGTTTACCACATTGTCGGTGGGGGGAGAAACCAAGCCCCGGGAGATCT
CTACGCGTCTGGGGGCGCTGGTGCCGTCTACGGCGTCCCGCGGCCCATGCCGCCATTCCG
TCAGGTGATGTACGCGCCGCCACCCGCCACGGAAGTCTACTCGGTGGAGGGGAAGCCGCC
GGAAGGTGAGTCTCACTCTCCCTAGGCGCAAGGGGAGGAAGAGTCATGGCCGTGGTAGAT
TCTGATGATCGCATGGGCTATTCCTGGAGATGGTTAGTTCTTCTGATGATCGCTTATATC
CGAGCCAAGATTTTTGCATTGCCGTGGTAAATGTTCACTGTTTCTGCTGGTTACTGTTGG
TAGCTGTATAGATGAGGGAGGTGGAGGATGGATGGGTCATGGATATCACATTTTTCGTCG
ACTGAAATAGATTCTTGGATTGTTATTATGTGATGAGTACATTTGGTGTTATTAGTAATA
GCAAGTTACTGTAATGTGGGACTGGATTCATATATATTCTACTAGAAGATTTTTTTTATC
TGCGAAACACAATGTTTCTGCATTTTGTATTCATATGCTTGATGCTGGATGTATCATGGT
CCATGAGTGTCCTATATATCTACTCTAGCTTTGATGCCAATGTTTGCGTATTTGTTTTGC
TGGAAGCTTAATTTACTGAATCCATTCTAGCTTTCTCCTTATTATATGCCACAAATTTGG
ATTGCTTGCTTTTGATACCCATATTGTTTCATTTCTTCGTTTTTATACTTGATTGATGTT
TATCCTCAGCAGCTATTTTCCTGGCATTACCAATCCTGGATGATTCTGTACTTAGAATGG
CATATTGGCTTCTCTCTTCGAGTAGGACTAGGGAGAACGAATTAAAGTTCCATTGTTGAC
TTGATTCAAGAGGAAAGTGTCGTTTCTGAACAGAGAAGCTATGCCAGATACTCCTACTTG
AGAGAATAGCCTCTAGAGACAGTGGCTCGTATCGTTTCCAGAACAGATCGACTCTGCATT
GCCCTTTTGAAACAAATGCTGCAGATATGCCATCCTAGCTCTTTAACTATTACTACTACT
TCCTTTGTTCCTACATATTTGTTGTTGGGAGAACTAGACTAATTCTCTCCAACAACAAAT
ATTGGGGTGTCTAAATTCAGGAGATGTGTTTCAGGTTTGATCAGCTATGGAAAAAGTGTC
TACGTCGTACCAGATTCTGAGTCCTCAAAATATGATACAACTACTACTTATATGCAATGA
AAAGGTTTCTCTTCTTTCATAGACTGTATACATATAACTGGATACAAGAAACAGGTGCAT
TTATAGCAGGAGTACTCTTATAGCAGCGTTCTTAGGACTGGCAGGAGGCTTAACATATCA
CACGAGTGAGCTTTGCTGCCGGAGCTTGTGTCGCTTATTTCCACCACGGGTTCTCGCCGG
TCCTGAAGTCGGTCTCCACCCATGGCACGAAGACGACCTTGCCGTCGTCGACGTCGGCGT
GAACGAGGGCCAGCGACTGTTTCAGAAGAGCAATGCAGATCAGGTCAGCTTAGTTGGGTT
CAGTAAGCAAAGCAATGGATTCTTCAGAAAGGTTCAGTTGGAAGGTCTTTGTTTTCTTAC
CAGAGGTGCAGGTCCACGGACAACCTTGCCCTGGTTGTTGTACTGGGATCCATGGCAAGG
GCAGAGGAACTTGTTCTCGGCGGCGTTCCAAGGCACGACGCAGCCAAGATGCGTGCAGAC
GGCGTTGATCCCGTAGGTGGCGAGGGTCTTGTCGGACTCCACCACAAGGTAGGTAGGATC
ACCCTGCAACGACATCCACACGATTTCAGCAACTTACTCTGGGTCTGGGCTTGGGGTGAT
CCAGCAGCTGCATATACTATCTCTGAAGTCTGAAGGCTTCAGAATGGCCGTTTGAATCTG
AAGGTACCTTGAGCCCCTGGGCGAGCGTGCGGTCGTTGGGGCCGTGCGTCTTGAGCCAAT
CCTCGACGAGGATGTCGTTGCCGAGCTTGTCCTTGGCGGCGACCCCTCCGGCGTTGCTCC
CGGAGCCGGCCGGGACGAGGAAGGAGCCGTAGGGGACGAGCATGCCGAAGGTGGGGAGCG
AGATGGCGCCCAGCAGCAGGAGGTTCATCAGCTCCCTCTTGCTCATGTCCGGGACGCGGT
CCGCGGAGATGCTGCCGGCCATGCATGTGATGTTCCTCGGGATGCGCTCCCGGCCGAAGC
CCAGGCCCTTGACGGGCTTGCATAGCGAGCTCGCACGGGTTCGGCAGAGCTGTGCACCAA
CATGTTCTCAGCAACTCTCGCACACCCAAACTACGGCACAACAAGAACAAAAAGGAACAG
GAATCCACCGAGAAGAGAAGACGGAGAGATGAGACCGCAGCAGGAACAAGGAATGAATTG
CTGGTTACCTGGGTGGGGTTGGAGGCGGTGGAGAGCGCGGTGGAGGCCATGGTGGCTGGC
TGCTACAGGGCGGAGAGGACGATCGAGCGAGCGAGCTAGCACTGCCTGTGTCCACCACAG
GCTTGCAGATGAGGCACGGGTTATATGTCCCTGCGGGAAGTGGAGAAGAGGCGGCCGGTG
ATTGGTTGATGCGCAGCAAACCGGCTCCGACAACCACATATTGCGTGCCTTGTGGGTGCC
TTGGCTTCCACACGCCCCCGAGCAGACTTTACATGGCCTTATCGGCACGGGGACTTGCGC
TCAAACTCAGCAGCTTGCTTCCTCTACTTCAAAATACGGTCACTGAACTTGTCTTAGGGT
TCACATACGGTCCTGATACAATTTTGGCTACGTATTTGTTTATAAATGGCGCTAGTCAAG
TGGACATAGTAACGTTGATCGAGACACGCAGCCAAAACAGATTGGATACACAGAGATTTA
AATATATTTTTTTGCAAAGTGGACACAACTAAAAGTACCCCTCCCCCACCTGGCCGGGCC
TCGCTAGCTAGCCCGCTAGACCACACCAGCTCTACCCCTTGCTCTCTCCTCCATCGCCGC
TCTCGAGGTGGTGTTCTCCATCGCCCATGAGGCGAGCAACCACGCTTGTGACGGCGACAT
GTGGAGCGACGACGTCATGACCTCGTCGTCGGATGCCGACCCGCTACCATCTGCATCGTT
TGGGAGGGGCATGTGTGATCGTCATGTCGCTCCAACGCGACAGTTGGATGATGTGTTGCC
TCCTTTGTATGGTACGTCGACCTTCATCACCTCTTCGTCGGCTGATTGGTCGACTTCTTC
CTCGGGGAAGGAATGTGGGTAGGGTGCATTGGCACTAACCTGATAGGGTTTTGAAAGCAC
ATATGTTCCCCTAGAGTTTTGATAATTCCTCACAACATACATTATCTTTTGAACTAATAG
TTTTATCTAGTTTATTTCAAATTGAGTCCAAAAAGTTGCGGTGGTTGGGAATTGTGAGGA
GGATCCCCAAGAAGGAAAAGAAGAAGAGGATTGGCAAAGCTTGAAGCTTCAAAACTCTAC
ATTTCATATTTATGTGAGAAATAACATTTAAGTCCATAGAAAAGCCATTACTATTAAAAA
TGGATGAAGTATATGTGATGATCTGGTTGCTCAAAGTACTTAGAGATTAGCCACCAAAAC
CATCAACATTTCTCGCACAAAATATTCTGTTCAAAACCCTAAAGTCAGAATCGGTGCCAC
CAACATTTCCATATCGGCCACACCGAGTTTTCCTTAAACAGAACCCAAAGCCAAACCCTA
GAAAATCGGTACAACTGAGATTCGCTTCGGTACAGGTCGTACAACCGAAAACAGTGACCA
CCTTGTTGGTGTCCATTCCTTGGAACTGCCCAGGCCAACTGAATCGGTCTCACCGAGATG
CTTTGTACCGGTCTCACTGAAAAGCCAAAAGTTAGAACATTTTGTACTAGTCGGTGCAAC
CGTGTTTTTACTTCGATTCTATCGAGTTGGGCAATAATGTTGTAATGGTTGGATTTTTGG
AGTTGACTATATATACCCCTGCACCTCCCTCTCACTCGCAGAGAGAGCACTCAGAACAAG
CAAATATTCCACCATTCATTTTCTAAAAGAGAACCACATACTCATGTGTTGAGATCAAGA
TTTTCCACTCCAACCATATGAAACTCGATTTCTAGCCTCCCCAAGTTGCTTTCCATCCAA
TGAATATCTTCTACCAAGCCAAATTGTATGAGAGAGTGATTGGGTCTTGAGGATACTATC
TTTTGAAGCACTGGAGCAAGGAGTTCATTATCCATAGCACATCTATTACCTTTTGGAGAG
TGGTGTCTTCCAGATTGGTTAGGTATCGCTTGGGAGCCTCCAAATCATGTGGAATTGAAC
CAAGAAGTTTATAAGGGCAA