Map Locations of contig_5860 (7547 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_5860

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70816 2 1066 bp AK249203.1 Available Available None
MLOC_70815 1 546 bp AK249203.1 Not available Available None
MLOC_70817 2 4158 bp MLOC_70817.1 Available Available LOC_Os11g47970.1, FRAME:-2, EVALUE:0.0, 13111.m23059 protein AAA-type ATPase family protein, putative, expressed





CDS Structure of MLOC_70816






CDS Structure of MLOC_70815






CDS Structure of MLOC_70817






Contig Sequence (7547 bp)

>contig_5860 7547 assembly3_WGSMorex_rbca.fasta
ATATATATATATATATATTTGGAAACAAGAGAAATATACCAATGGATTGTCCTGGGAAGG
TGTCGACGATCTTGACGACAGACTCGTCACTGACATTGTCGGTCTGGAAGATACCCTTGC
AGACACCGATACGGTCGTCACGGGTGGGAGCCCAGTAGAACTTCTCCATACGACCATCAC
GGATCAGAGGAGCGTAGAGCGTCGAGAAATCGTTACCGGTGACGACGATGGGCACACGGG
GGTTCTCCTCCTTGTTGTACATGCCAGGGAGCTGCACGTTGGTGGGGGCATCGGCGATGT
TCATCAGGGTGGCGTTCACCATCTGGTTGTTGACGGTGTACTGCGTGGTTCCGCCCATCC
TACCCGCACCAGCGTCAAGATCGTTGATGAAGAGGCAGCACATCTTACCCTTCTTGATCA
TGTCTGCAGCCTCACGGTACCGCTGCCTGATGAGCTTGGCTGGCTCTCCAGCGTTCCCAC
TCTCCAGCTCTCCGGCACTCATCATGATGGGGCTGTGGCAAAAAGCACAGGTCATTATCT
ATTATTACTATTATCTTATACTCCCTCTGTTCTTAAATATAAGTCTTTTAAGCGATTTCA
TCAAGAAACTACATACAAAACAAAAAGAATGAATCTACACTCTAAAGTATGNNNNNNTAC
ATCCGTATGTAGTCCTTTAGTGAAATCTCTAAAATGACTTATATTATGGAACGGAGGGAG
TAGTATTTCTTTAGGGAGGAAGTAGATGAATGTAAATTCTTACTTGATGCCCATCTTGGC
GAACACAAGCTCACACTGGAATGATTTTCCTTGACCCTTGCCTCCCCAGATACCCAAGAT
GAGTGGGATCTGAATTTCGATTCAAGGTCAGTTTCAGAATCAGAATGATTCATTTTATTG
CTGCTTCTGCTAATAATCAATTAAATTAAATAACGATGTCTGCATGCATCGATTAATTCA
ACCTCCTTTTTTCAAAAAAAGAAAAGAAAAAAAAAGGTACCTTGATGTTGGGCAGGGTCA
TGAAGTTTTTGGAGAGATGGACAACAAGCTTGTCCATGAAAGCAGGAGCGATGTAGAAGC
CTCCCATGGTGTTGTCGAAGTCGTACTTCCGCAGGCCCTGGCTGACGTACTCGTAGGAGC
TGAGGACGGCCTCGTGGGTGCCGTCGCCCGTGGGCGCCTGGAAGAGCGAGTCCACGATGC
CCTTCCCTCTGGTGATGTCCTGCTGGTCGTCGGAGATATCGTACGCAAGACCCTTCCACT
TGTCGGTGTTCCTCTTCTCGTCGATGTTCTCCGCTGCCATGACTGTGAACCTGTTGGCCT
TGGAGCTCTTGCCATGGTAGTTCACGGCCGAGGTCACCTGCTTCTTGAGCTTCTTCCCGA
GGAAGTTGGTCGGCGTAGAAGCCTGTATACATTACATTACATTACATATACACACATGAG
ATGCCGCTGAAGACACTGATAGGATATCATCACTAAGCAAGAGATGCAATCAATCAATCG
ATCGATCAGTGTGTGGTACGCACCGGAGCCCCGACGGTGGAGGAGAAGGCAGCAGCCATC
TCTGTGCTGCTTGGTCGACCTTGCTAGCAACGGTGGATGCGCGCGGCTGTGCTGGTGATC
AGTGATGAATGACTGCTGCTGCTCAAAGTATAGAGGCCGAGCTATGTGACGCCTTAAATA
CACGTGGATTGGCATATTGCTGCTCTGCTGTGGGGAGCTTGGAGGAGGAGGCGGCATACA
CACACCCCTGCTTGTGGATCAGCCTCCCGATCCCCCAGAGGCCACACGCTGGAGATTGGG
TTCTGAGCGTCTTGGCCGGCCGGTTGGATGACTTGGACCGTCAAGACCAAACGCTGCAGC
TGCAGCTGCAGATACGTCTGCTGGCCATCAATTCCATGGCCTTCCACGGCCACAGAATCT
AACCATTCATGCTCAAATCATCTCCCATTTCTTCCGTGCCTTTCATTTTTTCCTTTCACT
CGGTCGCCCGTATATACTATCTTGTTTATTAGCCAAGCCATGTCATTGCATAACCACAAA
AAAAGGGTCTCTCGTTGCTTGTTGGATGAGGCACCCAAGATTGTATTCTAGTTCCAAGTA
CCACAAATTTGTTGCTGCCATACATATACTGGTTTGTTGATAACCATCAAGCTAGGGATG
TCATTTGGCACCACACAAATCAAGTCCTGGTTGACATCAAGCACATGGGTTTGTACTTTT
GTCTACTCCAATAAATATTGCCACTTCGGTAAAAAAAAATGAAGCGTATTAAGAGAAAAG
GTAGCCATGCAGTTTTGCTTTGATGAAAAGATTATAGAACGTGTCTAATGTTTTCATGTA
AATGTAATTCGTGTTGCCTAGCTCAAGTTCCCTGCTGGTATTCTCATTGTTTGGGTCTAG
TACAGACCATTAATTGATCATTACGATGAATGCGAGCCGTTTGGCTCGCACAATCTTTGT
CCAATACACCTTCTAGTGATGTTGTCCTTGTTAATCAACTTTGTGGTGCAAATTGGGGTT
TCCGTAATCCGTCAAAGGGAAAATATGTATGTATGTGATGAGTCATGACCCCCCACATCC
ACAGTACTCGTACCTAATCAACAAGCTTCAGATGATTTCCACATATGTGCTAATCTTCCG
ACAAGTGCTAATATCAAGAGATATATAGGTTGTTGGGACTTGGGACCCTAGCTTGCATCC
ATTGGAGAAATGATTAAGCGGAAAATGACGATTTAAGAACATATACAATTCCTTTCTCTT
TCAAGAAGAGACTTACAATTGGGTTACCTGTGCGGCGATGAATCAAAAAGTTTGAGTGGA
TTTCGGGTCCAAAATAGTCCAACATATATATAGTGCATGCATGCATCTTAAGTAGAGTAG
GACCTTCTACTTGCCGTAGAAGGCACCGGTCTTCATGGCGTCGTCGTTGGCTTGGCCGAG
CGCCGCCTCGCTGAGGTACTTGTCGGCGAGCTGCACACGCTTGACGTTCTCCTGCTCCTG
GACCAGCATGTGGCCGTACTCCATGAGCTTCTCTATGGTCATCTTGGGCTGGTCGAACGT
GGGCGGCCCCTCCCTGGAGTTGACGAGGCGCTTGGAGATGTTCTCCACGCCGATCTCGCC
GACCCACTTGCGCACCTCGTCGTCGTACACCCGTGCCCGCAGCGCGCCGAAGAAGTCGAT
GGACTGCCCCGGGAAGGTGTCCACCAGCCTCACCACGGCCTCGTCCGGGACGTTGTCGGT
GCGGAAGATGCCCTTGCACACGCCGATGCGGTCCTCGCGGGTGGGCGCCCAGTAGAACTT
CTCCATGCGCCCGTCACGGATCAGGGGAGCGTACAGCGTCGAGAAGTCGTTGCCGGTGAC
GATGATGGGCACGCGGGGGTTCTCCTCCTTGTTGTACATCCCCGGGAGCTGCACGTTGGT
GGGCGCGTCCGCGATGTTCATCAGGGTGGCGTTCACCATCTGGTTGTTCACCGTGTACTG
CGTCGTCCCGCCCATCCGGCCCGCGCCGGCGTCCAGGTCGTTGATGAAGAGGCAGCACAT
CTTGCCCTTGTTGATAATGTCGGCCGCCTCGCGGTACCTCTGCCGGATCAGCTTGGCCGG
CTCGCCGGCGTTGCCGCTCTCCAGCTCACCGGCGCTCATCATGATGGGGTTGATGCCCAT
CTTGGCGAACACCAGCTCACACTGGAACGACTTGCCCTGTCCCTTGCCTCCCCAGATACC
CAGGATGAGAGGAACCTTGATGTTGGGGAGTGTCATGAAGTTCTTGGCGAGGTGGACGAT
GAGCTTGTCCATGAATGCCGGCGCGATGTACAGCCCGTCCATGGTGTTGTCGAAGTCGTA
CTTCCGCAGGCCCTGGCTGATGTACTCGTAGGAGCTTAGGATGGCCTCGTGGGTGCCGTC
GCCCATGGGGGCCTGGAACAGGGAGTCCACGATGCCTTTCCCCCGAGTGATGTCCTGCTG
GTCGTCCGAGATGTCGTAGGCCAGACCCTTCCACCGGTCCGCATCGGTCTGCTTGCCCTG
GTCAAGTTCCTTTTTGGCCGCCATGACCCTCACCACCCTGCTCTTCATCTTGTTGCCACC
ATGGTAGTAGTTCTTCACCTTCTTGCCCAGGAAGATGGTCGGGGTCGACGCCTGCACAAG
TATGACATAGTCAGCCCCAATCACATTCATGCACGTTGGTTCACTTGCTGCTTGCTTTCA
ATAGCAATTGCCACGATGAACGCTTAATTTGCAGATATCAACCCTTCATTTGGGCAGTTC
CAGACTTCACTCGCTATTCAATTGCATCCGCATATATATAGAATTAATTAGTCCATCCAA
AAGCTCCAGCTGATGAACAGGGGCGGAAGGTCAAAGGTACAATACCAGAAGTGGTGGGCC
CGTGTTGAAGAGAGTGGGGGCCTAGGACCCTACTCAAAATATGAAATTTCAATACGATTT
GAATAACTTTTAGGAGGAAATGCTAAAACTCAATGAATTTGGATAAAATGTGACACCACT
CTTAAATCGTTTTTGTTACTCTCCATCATTTACCTCCCTTATTTTAATGATGTTTTGCCA
CGAGTCAAAATAGTTTTTAGATCCGTCCCGTCCCGGCATGCTGGGCCTTGAAGTTGATGC
CCCATGGCTTGAATGACATATTGAATTACAAAACAACCTACTCCCTCCGTCTTGGTTTAT
AAGTCATCTTATGAAAAAAAAATCTCAAAACACTTAGGCACGATGCATTAATTTTCTGCT
TGTTTTTTGTTTTTTTTTACATGGATAAAGGAATCAACCAATAAGAGACATGGAACGTGT
ATGTTTTTAATGACTTGCGACTAACTAGCACGACATGCAGTGGTTAATTCATTACATGCA
ATGATATTAATTAGCAAATTAATATATTTTTTTGTTTTCCTCTCCGTTTTGATCACGATG
CACAACCTAATATGACCTATACACTGAGACGGAGGGAGTAACTAATTCAGCCAAAAGTTC
TTACTAATGAAGAATGAGGAGAAGCATACTTCACTAGTTAGTTTCTAATATTATTGTATC
TAACTTCAATCTTTCTTCCCTCTCTCTCTCTCCCTCCTTCATATCGGCCATTCACTTTTC
TTTTAAAGGTCATCTGATCTACATCTAGTAGTTTCATCCTCATCCAGTCCCTTCTTGAAG
GCAAGAGACAAAGAAGAACCGGTTAAAAATCTATATGTCACTCAAATTCTCACACACGGG
CTTGACAACCGTGTGCCTCCACTCGAGACTTTTGAGGTTCTATCTTTCCCTTCCTCCTCC
ACGCAATAGCTTCGAAAAAGTGTAACCATTAGCTTCCCACATTTCTCAACACTCCCCGTC
ACCACCCTCACCTCGCCCTATTTGTAATTTGCATCGTGATTTAATAAACCTCACAATAGT
TGCTCCTAAATAAAATCTCGCTACCACCTCCCGTTCATTCTCATCCGCGCCATCATGAAA
CAACCATTAGTATTGCCTAAATTATCTTTATCGTGCTAACTCAATATTCAAGGTCATGCC
CAAACCGAGATCAAATGACCTCATTTGATAGCCTTCGCCCCATGGTGGCTAGCCATCCGC
TGCCCACCCCATCACCCTAGACTCACCCGAGAGTTTGGATACCCTACCCCGCTACCCAAA
CCCGAACTGAACCAAAATACCCGAATTGTCGGGTAATATGGGTATCGGGTTAAGGTTTGG
TTCTCATTTCCTGGCTATTCGGTTTTCGGGTTAGGGTTCAGGTTCTAGTCTGTAAAACCC
AAAATACCCATACTACCCGAATTATTCATACTAGTCAAATTATTTATGTTATTATTACAC
TTACATGTTACACAAACTAACTAAAACACCCACACTATCTGAATTATTCATGCCGAAACT
TAATGTGTGCTCTGAATATTTTGGGTTTTTTGGGTACCCGAGTTACCCAAACCAAAATTT
TGGGTAATTTGGGTTCGGTTATTTTTTTGACATAAAAAATTCCGATTCCCATTTTTTTAA
TACCCGAATTACACATGAACCGAAATAACCAAAATACCCGAACGCTCAGGCTGACCATAG
ACAGTCTTTTTAAGCCCCGGAAGGCATGGGTGAGGAAAGAGATGCCCTTGTCGGAGTCAA
CACATAGAGAGGAGGCCCAGCTTGTCGCGTCCGAATCTCAAAGCAAGATCACACGGTCAC
AAATTATATTAAAAACTGTACAAAATGAAACAATTCAGACCTGAAAATGTGTAGCAACTC
TGTCAATTAATTTAGAGAGACGGTGAGTTTTCTTTTTGTCGTACACACGTTGTGTCCACT
GAATTAAGGATTAGGAACCACGAGTGTACGTGGAAGTGTAGGTCATACGTACCGGAGCTC
CAACGGTGGACGAGAAAGCAGAAGCCATGGTGTTGATCGATCGTTCTCTTCTCGCTGCTG
ATAACTTAATTACAGTAGTTTCTAATTAATTTGATGTGCGTACGTGCAGTGGTATATGCA
AGCTAGCTCGATCAGCTCTCAGCTGGATTAGGCCGGCGTACTACTAGTACACCTACAGAT
GCAGGTGGACTGAGATCGATCGTCAGTGATGGATGGAGCTGATATGGATAAAAGAGAGGG
GTGCAGTGGTTAGCAGGTACAGATGCGATGCCGATCGATGGAGCTTGGCCATGGCGTCTT
ATATAGGTGCATGGACAGATGGCCATGGAGCAAGCGTCCAACACGACTGGAGTGACCTAG
AGCGTGAGAGACTATTCTAGAGCGTCCCTGCGTAATCACGCAGTCAAGCCACATAAGCTG
TGATTATCAGGCCGGCTGCGATAAGTAGCTAGTGAGGCGAGCCAAGTGGAGTGGATGATG
AGATGTTAATTGTGTGGATAGGGTTGGGCATCTCCCAGGAGCCACACGCTGAGGATTGGC
TCCATCCGTCTCTACACAACGGCGTCGACGCGGCTGCTCCTCAGCCTTCCGATCGGCGCA
TCCAACGGCCCAAATGTGATCTAAGCTGCATGCATTCGGTTCCTTGTCGGATGGGGATCC
GGAGCATGCATGCATGCCTGCCGTACACCACTACGGAGTACTACAATACTAATAGATGTG
CATGCAAATTTTCTAGAATGTAGATGGTTATTGATTGGCTGTGAAATGAGTTAAAAAATA
ACATTTACACTACACATGCATATAGAAGTAGTACAACGGAGTACTAATTAGCTGCTAGGA
GTAAATGCAACGTGCCTTAATCTTTGTTTATTTTGAAAACGCACGCAAGTCTAACTGTAC
CTTCTAAACCGTGACGGAGGAAGTAAATTTCTTTTTTGCGGGTATGCATGCATTATTACT
CTAGTTACGAGACCGATGCCTTCACCCTTCACCATAAAAATCACATCTCGTTCGTTCTAT
TTTTCTTTCTTTTGCATTTTGCATGAAATGTCTAGGCTGGCTTTTACACCGCCACAAAGT
ACTAATCCCATTCCCTCCAGTAGGGCCCGGGTGAAACTTCATGAAGTATTTTTAAATATT
CCCTTCATTTTTAAAAGGCTGGAATCGGGTCTAATGGTTAGTCTTCT