Contig Data
morexGenes
Links



Map Locations of contig_58588 (3268 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_58588

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70811 1 2984 bp MLOC_70811.1 Available Available LOC_Os11g40450.1, FRAME:+1, EVALUE:1e-15, 13111.m04000 protein retrotransposon protein, putative, Ty1-copia subclass





CDS Structure of MLOC_70811






Contig Sequence (3268 bp)

>contig_58588 3268 assembly3_WGSMorex_rbca.fasta
GGCTTCCGACCACACTTCTATAATCCGTTGCATCAACCGCAGGGGCTTCACTCCTTTTGC
TAAGTTTAAGCCGAGGCTCCATTGGAGCATAAGTTGGTTTGCAATCCTCCATGCTACAAC
TTTCAAGTATCTTCTTTGCATAGGGCTCTTGACATACTACCTCGGGATTGAGGTACAACA
AAAACCGATCACTCACTAAGTAGGCAGGAAAAGAAAGCAAAAATAGAAGATTCATGTGGT
ATTTCAGCCTGTTAATCTCTCAATTTGATATTATGGATTCTCCAACTTTCCATATTGGCA
AATGCTCAGAGATACCTTTTCCATGTTTAATAGATAATTTCTGAAGTTAAGCACTAATGC
TTGATGGGTGCTTATGAACTTGTGGGATAATTTAATCACCTTAAGATGAGGTGCTTGCAC
TTGAGGGTTTATTCCAAAGTAGAAGGTCAGTGCTATTGCGTACTCTCTCACTTCTATGCA
CCTGTTTAAGCATCTTTTGCATTGGATACAGTATTAGAAGTCAACTCCATATGTTAGGTC
GGCTTTCTGATCAAGGTTGCCGTATCTGATTTTAGGGCGATATTCTTATTCATATAGCTT
GAAGGGGAGCCTTGGCGCAGTAGTAAAGCTGCTGCATGAGGTCACGGGTTCAAGTCCTGG
AAACAGCCTCTTATAGAAATGTAGGGAAAGGCTGCGTACAATAGACCCAAAGTGGTCGGA
CCCTTCCCCGAACCCTGCACAAGCGGGAGCTACATGCACCAGGCTGTCCTTTATTCTTAT
GCATATAGCTTGGTGGTTTCCACGTTCCAGTGGGATGGCCTTAATTGCAAATGCAGGTGC
ATTTGCAAAGCGTCGGTAATACCCTACATTTTGACTACAAGTTAGTTTAGAGTTAAAAAT
CAGTGACATATGCACAACATTCTCGCTTAGAATGAGTGAAAAAAAATAGTGTGATAAGAA
GGAAAAGGTGCCACACAGATATAAAAATATGAACGTTGCCATGGGATATCAAACAGAAAC
TAGCCAAAAACAGTCTAATCAAATTGGCCCAAATCAGACTAAGGTGATTTGCCTTAATAA
GCAAACACATGTACTCACCAGGAACAAACGCAAAAAAAAAAAAAGAAGGTCCAACTGCAC
AAATTCGGTCATAATAACAAGAAAACAAAGACAAATGCACTATATATGCTGCAGTGGCTG
CAAACTGTTGAACAACAGTGCCCGCAAAAAAAATGTTGAACAACAGAACATGGCAATACT
CATTACACAATTATGAAATCAACTGAAGAAATTGTACAGGCTAGGTTCCTGAAAAAAAAA
ATGTTGAACAACAGAACATGGCAATACTCATTACACAATTATGAAATCAACTGAAGAAAT
TGTACAGGCTAGGTTCCTGAAAAAATTGCACACGCTGCCAACTCTATTCCCCTCTTTACA
GTTAAAAGTAACCTCTTGTGTAGTAGTATTTGTAGTGCCCAATATCTGGTTGTACAAATG
CAAGGAAGGATATGAACATTAGGCTTTTGGTCATGTCATCAGATTACAAGGAGCTGGAAT
AACAACAAGCAAGCTAGTTCTTATATGACACAGAGGTGTGCTTGCAAACTGCTCAAAACA
AGATTTTTTCACGAAATGTAGAGCATATAGGAGCCATCCAAAATGTATATCTGATAACAT
TAGCAATCACCATGCAATGAAACAATCCGTACACATGCGACAAAAGGAGGTTCTCTTATG
CTTCCCCGGTGAAAACCGACACGGTCCAGAAGCACCCAAGGAGTTCGACAGCAGATTTGC
ATCAGATCATTACTACCATACCAGCAGAGTCAAGAAATGTGCGGTGGCATTGAGCAGCCA
TACTGTAGCACCTCCAGTTAAGGCTTCTCACCGCAGATATAAAGGGTGGGGTTCAACAAC
TCTGATGGCAATGTTATCAAAACTCGCGCAAAATAGACACAAACTCCCTTATTGTACCTG
ACAAGCCTCAGTAGGTAACAAGAATAGGTTGGTTAAACCTGTTAAGAGTTTGCATTACAT
ACTGTACATTGCAACGTAGGCTCTTGTTGTACACAACCGGGATTGTAGGATCGACCCACG
CCAAGGCTACGTGCCTGAGTTGTAGGGCGTGGGGTTCACCTCTCGCAGGGGAGATATATC
TGTACTCTGTAACAGATTGACATCAATCAAGGGAAACACTTTCCAACTTGGTATCAGACT
CCAGGCCTCCTCCCATGGACGAACACGGCTCCTCCCCCTCCTCCGTTACCCACACCTCCG
CCAATTCGCCGGGATCCCTCTCCTCCACGGCACCTGCCGCTGCTTCGTCCTCGGCTACCT
CTGCAGCCACCTCCCCTCCATTCATTTTCGGAACGAACCCCTCCCTTCTCAGCGGCAGCA
CCGCCGCTGCCGCCACTCAATTTGCTCCCCTTTTCACCTCCGGCACTCCTACGCCGCCAG
CACCTGCTCCCCGCCACCCCATTTTCAGCAACCACACCACCAATCACATCAAGTTCTTAC
TCAACCCTTCTGACCACAATTATCACAAATGGAAATCCTTTTGTCTTATGGTCCTTCGCT
ACGGTGTCACCTACCTGATCGAACAACCACTCCCCAATATCTAGAACTTGCTGCCCAGAT
AGCCCTCTGGATCTATGCTAACCTGGTGGATCCCATGGGCGACCAAGTCGTCGGCTCCAC
CACCACCTTCGCCATCTGGAAGAAAATAAAAGACTTCTTTCTCGCAAACCGCGCTGCCTG
GTTCATGATACTCAATCGGCAGTATCGAAACCTCAAGCAAGGTGATCTCCCGGTGGCTGA
GTACGTGCGGCGCATGAAGCTCCTCACCGACGGTCTTGCCGACATTGACCACGCCGTCAC
CGAGGTGGATCTCACCACCCAAATCCTCCACGGGCTTGACAAACGTCTCGATACTATTCG
GGTCGTCCGCGGGGATCAGGAGCTCCCGTTCGACATCGTTCTCTCCCGTGTCGTCCTGGT
GGAGGAATCACAGGAGCGGCGCGCCGCCGACGAGGCCGCTTCAACGTTCGCCTTTTCGAG
CGGTGATCGTGGCCAGCGCAATGGCTCCGGCGCGGCCACCGGTGGCCAGGGCGATCGCGG
AGACCGCGCCTCTGACCGCTCCAACTACCGTGTCCAGGGTCCTCCTTGTTAGAGTTATAA
TACAAGTCATGTACCCTTTTGTATTTATCCCAATATATAAGGGGTTTTCCTGCATATAGT
CCATCACCTGTACATGTATATATATCGG