Contig Data
morexGenes
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Map Locations of contig_58579 (6912 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_58579

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70805 1 1045 bp AK251374.1 Available Available None
MLOC_70804 1 768 bp AK361755 Available Available None





CDS Structure of MLOC_70805






CDS Structure of MLOC_70804






Contig Sequence (6912 bp)

>contig_58579 6912 assembly3_WGSMorex_rbca.fasta
AAGTTATACGACATATGGATGTATATAGACATACTTTAGAATATAGATTCACTAATTTTG
CTCCGTATGTAGTCCCGTAGTGAAATATCTAAAAAGANNNATATTTAAGAACGGAGGGAG
TACTAAATAAGGCACAAGGCGCATCAAAAAAATAGATAATCACACTAATATAGAAATAGC
TGAGGTAATCAGACTTACACTAAGATGAACACCAGCTGACTGACAAAAGTTGTGGAGCTT
AGTTTGCTGCCAGCAAGGATGGCATTCCACCTGATCAACAGCTGGAGGTACACGAGCTAC
GGCAAGCAAGTCACCCAACTTCTTTGATGAAAAGTTACTCACACCAATCGCGCGAGCTTT
GCCAGCATCATGTAACTTCTCCATTGCCCCCCAAGTAGCAGGTATGTCAGGTGTAACGAA
GTTTTCAGGGTTGTTGTTTGTTCCCTTCTTGACTCTAAACGGCCAATGGATCTACAAAAT
ACACTGACTTCTGTCAGAGATTGTGATCAAATTATTTGTAAAAAATCATGCCAAACAGTT
TCAACACGTGCCCATCTAACGCTAAGCTGAAGGTACCAGAAAAACAACACAAAAGATAAA
AGTCATTGAACAATACATAATATTTTCTGCAATGTATTCAAGAAGCCAAGAAACAAACAG
CAGAACTGATCTTGAAACAAAAGATAATTTGACACGAGAAATCAGTAACACCCATGTTAA
TTCATACGTACCAAATAAGATGGAAAAACGTCCACTGGTGTAATATCACTATATGAATAG
ACAGAACTAAGGGAATAGGAACACATTTATTCAATAAATGACACAGAACCATATGACTAG
TTTCAAGATTATATACCATGGAAATAGCACAACAATAGACTAGCACGGATACATAATTTT
GTCAGTAAGTATGATTAACATTTAAGTATGATATAGACCAGACAAGTGATCCTTTCCTGC
TGAGGAGACCTAATAAAATAGAATAAAACGGTAATACACAAAAGTAGCGATATCAGTACA
AGCAAAGCGAGATGTTAATATATATAGAGGCCATAATCATAAATAGGAGATGCTCACAAG
ATAAAGATCCAAGTAATCAAGCTGTAAATCATTCAGGCTTTCATTTAGTGCCTCTGGCAC
ATCTTCAGGAGCATGATGATCATTCCTGAAACCACAAGACATCCAAGATCAGTAGGACGT
GAACAATTAAAAACTTCAAACAGACATGTATATACTTGATCTGAGCTGCAGAGACATAAC
TACTAAGAAACCACCAGAGATTTGGGCTTACCATAGCTTCGAGGTGATAAACAGATCGTC
ACGCTTCACTACGCCCTCTTCAAATAGCTTCTTCAGCGCCAAACCAATCTGGATAATGTA
AACAATGGATATATATCACGATCTGTATAAAAGAAGGAGCTCTGCTTTTGCATTGAGAAT
GTGGACAACTGTACATCAGCTTAGACAGCTTCCAGAAAATATAAAAGGAAAAGCAACAAC
TCTATAACCCTCCAAATCAGAACTTCCAAACACACTTGCTCCTGGCAATCCGGAGCATAT
CAATGTCGTCCTTCAAGAGGGAAATCAGTCTTCACATTTGCCAATTTATCCTGAAAAATT
CTATTGTTTCTATCTTCCCAGATATGCCACACTGCATATATGCGAAGTCCAATTGCTTCT
TGCCATTCTCCTTAGGTGCCCTGGAAAAGACCTTCCCACCACCCTCTCGGCAAAATGGTC
TGCAAACTTGCAGTGGCAATTCCCGGAGATGAGCAGGATATCTTCCTCCAAAGCTCCTTC
ACAAACAAGCAGTGCAAAAAAAGATCGCCCACGGATTTGGGTGAAGGTCGCACATCATGC
ATGTAGGAGAATGGGGCCAGTCCATAACCTGTTCTGAATCATGAGCCATATGTGAAACTT
AACCCTGATCTCAGCTTTAGTGCACCAAATCCTCTGAAGCTCTGGCTGCAAAATGCGACC
CTGAAACTGGGCCTAATCGTTTACATAAATACTTCTTCTATTGGCCCTCCTGAGCAGAGC
AATGGAGCAGCCATCTTGAGGGAAAACCCATGCAACCAAGAATGATGCCAAAACTGGGTC
TTAGCGCAATCGCCAAGCATAATCTTAGTGCAAGCTCTGAACAAATTCCGTGTCACCATC
ATCACACGGCGCTGATGTACCGATCGCCACTCGATCCACGGCCATCTCAGTGATATCAGG
CTTCCATTACTCCAACTGTTCTGCAACATGAATCGAGACGATACCGCAGGCAGCACATGT
CTTAACGTAAGAGGGGGCAAACGTTGCCTTGTCAGGCCTGTGGATGACATGTCAATCTAG
CCAACCGAGCTTCAAAAATAGTCCTGACTATATGAACCCTTTATTTCAAATCCTAAGCAG
GTTCACTATGAGACCATGTCACATCAGTACCAGTATTCTGCGCATAGGTGGACAGAAGAA
ATTCCTAGTAGTATAACGATATGGTGCTCGGATGATGGATGGATATCGCTTGCTAATTGC
AGTGAATGTATCACTACGCTTTCCTAGTTGTATTGCAAGGTTATCAGATCATGCACACAT
TAAGGAGAGAAAAAAGACAGGGCTGAAAAAGGAAAAGGTTTTATAGGATTATTATCTTGT
GCTCAGTTGATAGTTAATACCTCCTTTTCGTTGCCGTAGACTCTGGCGCAATCGATGTGC
CGGTACCCCGCCTGCATCGCAGAAGAGAAGAAGGATCTGGTGTGAATCAGGAAACAAGAC
TGTACGAAGAGAGGGGGGGAAACATGCCGTCCATCTGGATGGCGAGGCGAGTGGGGATCA
GGAGGGGTTTGCGCGGCGGACCTTGACGGCGGCGTAGACGGCGTCGCCGACGACGCCGGG
GTCGGCCTGCCAGGTGCCGAGCCCCACCGAGGGGATCTTGGCTCCGGTGTTGAGCAGGAA
GTGCCTCGCCATCGCCGCCTCCCTCTCCCTCTCTCTCTCTCCCGGACGGGCACGGCACCA
GAAAGGGATTGGGGAAGAACGTAGGTGGGGAAGGGGGCAGGAGACGGCTGTGGCCGGCGG
GCAGGGGCAAACGGTGGCTCGCTCCAAGTGTGTCCTGGCTGGGTTTCCTGTTCCCGCGGC
CGTGACAAGACCGGCCTATTTTTGGCCTCTACGGATGGAAGCGAAATGGAGAAACCTTTT
TTGTCCACGTCGAACATATACACATCCGTTTTCTCACTAATAAAACGATAAAAACGCAGA
TATTGAGCAAGTTGGAAGGAAAATCAGACCATTCCAAAATCACCGTTGCAGCATGTCGTC
ACAACATCACCTCGGCCGTCGAAGCATTGTCGTTACGGCATCTTTGTGGCCGTCCATACT
CAAGACGGAAGTTAGTTAGAAGCATTGCCGTTGTGCCATCACAATTGTCATCGTAACATG
CTTCGTAGCATCACCACGGTTGTTGAAGCATTGTCGCAGTCGTGGAAGCATGTCATCGTG
TTAACGTCGCGACCTTAGTACCATCATCGGAGTAGTCGGGATTCCGTCGCAACATCGCCG
AGGCCATCGCAGCACGCCTCGTAGCATCGCCGCAGTCGTCGAAGCACACCACGGATGCTC
CAAGCATGTCATCGTAGCAACTATGCCACTGTGCTGGTTGTAGCATCATCAAAGCAGTCG
GCATGTCGTCGAGCATCATCACGCCTGTTGAAGTCCATCGAGCATTCGTCACGTCATCGT
TGCGGCCACTCGCCAACGTCGACATGTTTGTTGAAGCAGTCGGATGCAGCATCGACCAAC
GTCGCAACACTGTCCATGGTCTCACAATGGCAATGACGCCCATAACAACCAGAACACCCT
CACAACACCATCGTCTCGGCTTTATTATGTATCAAATGATTCATTCTTAGCTGCCACATA
ATCTTTCCTTTGTGGGAGTTATCAGATAGTCTAACCCAAGTTCTACAAATCTCAATCCAA
ACACATACCCAGGTCATCCTGGACGTTCGGGTATTTTGGTTATTTCGGTTCGGGTAGTTC
GGTTTATGTGTAATTCGGGTATTCGAAAATGGAAATCAAAATTGTTTCTGTCAACAAAAT
ACCCGAACCCAAATTACCCAAAATTTCGGTTCGGGTAATTCGGGTACCCAAAATATCCAA
AATATTCGGAGCATACATCAACTTTTGATATGAATAACTTAGATATTATGGGTATTTTAG
TTAGTATGGATAACAAGTTAGTGTAATAATAGCATGAAAATTTTGGACAATATAAATAAC
TTGGGTAGTATGGGTATTTCGGGTTTTCCAGACTAGAAACCGAACCCTAACCCGAAAATC
GAATAGTCAAGAAATGAAAACCGAGCCCTTACCCGATACCCGAATTACCCGNNNNNNNNN
NNNNTTCGGTTCGGTTCGGGTTCGGGTACCCAAACGCCCAGGATGACACCCAGACGACTA
TTCAACACTAATTTCTTAACCGGGCAATTCGCAAAAAATAAGGGTCAGGAAGCTTCATGC
TCTACATCTTTAGTACACCTCATGCCTCTTATTTCTTTCTCTTTCTCCTCACATTGGTTC
TTTCTTCCCCTATCTGCCTGCTTGCGAGTGTTCGCTCGCTAATATCAAGAAACGGGTGCT
CATTCGATAGTTTTCATGTGTCATTGTTCTCTTCTCTGCAGCACAAATAAATAAAGGACC
CGAATAACTGACACTTGATTCCCAGGGAGGGGGGGGGGCTGATCAAACGAACGGGTCCCC
AGGGGCAACAGGCCAGGGCGAACCCCCATTGGCCCAAATGGATTACGTTTTTCTTAACAT
GAAAAAAATATATTCTTTCATAGAAAATAGAGTACACATAAAATATGAAAAATGAAATGT
TACGTTACAATAATGTGCATGATAATCTACAATTTTACAAATGGTATGAATTCCACCATG
TAGATGTTTCACTGTAAAAGAACATGTTAGTTACAAAAATGCCATGATAATCTATAATTT
TATAAATGGTATGAATTCCACCCTGTAGATGTTTCACTATAAAAATCATGTTTTGGAGAG
TTTTTTTTTCTTTATTTTTTTCAAGGACTGAAACAAAATGCCATGACATTTTATTTTTTC
TTTATTTGGTGCACCGTGCAAAAAATATATTTAAAAGGGGCATATCAATGACAAAAGTGC
CATGCCAATAAAAATAAAAATTGACATCCTCCTAATGATAAAACCGGCATCCTGTTAAGC
AATAATAAAGAAATGTCAGTCTAAAAAATGTCATCCTCCTAATAATTAAAATGTCATGCC
AACAATAATAATAAATGACATGCACTATATAATAAAATTGTCATCCTCCAAATAATAAAA
AAAATCACTCTCTATATAATTAGACTGCCATGCTCATGATTAAAAAATGCCATCTGAACA
AAGAATGAAAATGTCATGTTCCCAACAGTAGAACTTTCATCAAATTAATAATAATAAAAC
ATACATCTTTGCAATATAAATATTCGATGTTATTAATAATAAAATGGCATGCTCTGAATA
GTAAAATGACATCCTCTTAATGATAAAAAATGCCATGTTATTACTTATTAAAATGCTAAC
ATCTTATTGACAAAAAACACTGCCATGGTACCTACAATAGTAAAAAGGAAAAAAATTGCG
CCTATAAAATGCACACGGAAAGTCGTAGAAAATGCCATCTGGAAAATTGATTTTGTTCTT
CCAAACATGTAAAAAGCTGGATTTTTTTAAAAAAAAAGAAGTTGAATTTCGTCGGTTCGC
AATCCTCTACTTAGTGTAGTGCTAATCCCGCGACCCACTACGAAGGAGTTGTCGGTTCGA
ACCCAATCCAGCATGGTAACGGTGGAGGGGTCATCCACCGGGGTTGGATCCCCAACGAAT
GTTCGCTAGATAGTATTTTCATAAAACTACCAGCGCAGTAATAAAGGGCGTGGCGGCCAC
ATGAGATCCTGCACGAACCTTTGTTTTGAAAAAATTACTACGTATTCCTTCTGTTTCTAA
ATATAAATCTTTAAAAGATTTCATTGATGATCTACATACAAAGCAAAATGAATAAATTTA
CACTTTAAAATATATTTATATACGTTTGTACATATTTTTAATGAATTTTTTTCAAAGGAT
TTATAATTAGAAACGGAAGGAGTACACGAGGATGCGAGCCAGGATCGGACGCCACGAGCA
ACCGCAACGACCTCACATCACATGGGGTCATCATGGGGATATGTCGCTCCCTCCGCGTCA
TGTGTCTGTCCCTCGGCCACGTACCCCACCGTAGCCGCTCACGACGACAACTTCCACGAA
CCAGTCCAACCGCGACGTGGCCGGTGATCCACGCTGCTGTGCTGACTTGTCCCGACCACC
GAGGAACCTGCCGCCGTGGACGCGGAAAAGTCCCCGGGATCCGCGTCGGGCCGATCCAGC
CGTACGCCTGCCCCTCGCCGCGAAGCGACGCGCCGCCCCACGCCACCGAGACGACGCGCT
CGGCATCGCCGGAGTCACCACCCCTCCTCCACTTCTTTATCTTGGAAAGAGGAAGCTGGT
CGGTGCGTGTCGTGTCGGCAGCGCGTGCTCTGCTCTGCCCTGCCCTGCCCTGCTCGCCGG
TATTAATACCCCAGATCCCACTGCAACCTCCACCCATCCCTCCTACCACGCTCAATCCCC
GAGCTCCATCACCACAGCCCACTCGAGTTCTTCTTCTTCAAGCTTTTAGCTAGGTTGACT
CCGCGATCACCGAAGCAGCCTTGGGCCATGTCGAGCGGCGGGCAGAGGCAGCAGCAGGCG
AAGAAGCCGTCGCCGGCTGCGGCGGGGGCGGACGAGATCGAGATCAAGAAGGTGTTCTCC
CGCTTCGACACGGACGGGGACGGCAGGATCTCGCCCTCGGAGCTGGCGGCCGTGTCGCGC
GCCATCGCGCCG