morexGenes - Barley RNA-seq Database

Contig contig_58545
Source Contig contig_58545
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_58545 (7282 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_58545

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70786	1	130 bp	AK364603	Not available	Available	None
MLOC_70787	2	4762 bp	MLOC_70787.2	Available	Available	LOC_Os02g05310.4, FRAME:-3, EVALUE:0.0, 13102.m00571 protein splicing factor 3B subunit 1, putative, expressed
CDS Structure of MLOC_70786

CDS Structure of MLOC_70787

Contig Sequence (7282 bp)

>contig_58545 7282 assembly3_WGSMorex_rbca.fasta
ACGAGGCGCTCCCCCGTGAGCAGCGGCGAGGAGGACGCCATGGGCGGCGCCGTCGAGGAT
CCGGGCGGGCAAGGGAGGGAGGTGGCGTCGGAGACACGGCGCGAACCGGCCGGTGATGGG
AGGGCGGGCGGGCTGGGCAGCAGTTGGTTGCGCTCGCGCGCCGCGTGCGCGTGGCTTCTG
GGTAGCTTGGTTTGGCTTGGCTGGGACGCTTAGCTTTGGGTGGGTGACTGACCACACGAC
TCGGTTCGTTCCGGTCTCGGTCATAATTGGCGGGTCCGTCGGGGAGACCAGGTCGCCACG
GCCGCTCGCTTCTTCATGCCGCCGCTCGGGCACGACATACCGGCGTTTGCACCGTTCAAG
ATCGTGAATTTGCCAGTGGCGGCACATTACATATCCAGCGAAATTATCTACGTCTTCAAA
GAACGTTAGAACATTGATAAATACATATACCATGCATTTTGCGTGGTTCAAGCCAATTGA
ACATCAGTCATTGAGAAACATGGACTCAGCAAACAATATGTGTTTAACACGAAAGGTGAT
CAACCGTAAAACAACGAAAGGTGATCAACCGTAAAACAACGCAAGCATTCCAGACATAAT
CATGCCACAGCACACATAGTACAGAGCTTGACGGTTTACAGCGTTACAAGACATCGCTAA
AACAGAGTTTTGACAGCAGAGGCTGGCCATCATAACCAAATATACATGATAAATAAGACG
ATGTTCATGCTAGTATGATTGTATTGTCTTCACTATTAAGGACTTGATTTCACATATTAT
CAGCCACGGCGAAATAAACATGCTTCTCTGCCACGTCGCTCGCCCGGTCGCAGATCAAGA
TAAGAAGACTCTTCAGTGGAACACTTGGAAAGAAATACCCTGAAAACACAACAGTTCTGA
GAAGGTTAGTCCATAGGTCTCCAGCAGTAGGTTAAAGCACTACAGTCAACCAGGACAAAA
ATGTATATTTCTTAAAGATTGCACCCCCCCTTCAGGAAGCAACAAGCCTGCAAATACAAA
AATGCAGCTTCATAAAAACAGACTTTGCAAGAACAAACAACACCAGTTCAAATAAATGCG
AGCACTAATTCAAATACCACCCCAGTTCAAGCTTCACATGCATCTGCACTGATGCATGTG
GGTGACGATACATGGACATGCACATCCTGCCTGTCAATGCGTTTGCATATCAGATTCTTG
CTTTTGTATTATTTGTAGAGAGCAAAAGAAAAATACAACATACAGCAAAATGCAAAAGGA
AACATGACAACACAGATAAAGCACCACTTGCTACTGCTCGCATGCTAAAATGACATGCAC
AGCTGATTCTACTTAAACTGAGCAGCTATTTATTTGAACATACACTCAATGGGTCAGTGC
GCTACTCCCTGTACAGCTGATTCTACTTAAACTGAGTAGCTATTTACTATGAACACTACT
AGCTACTCCATCTGTTCCTAAATATAAGTCTTTGTAAAGATTTGAATATGGACTACATAT
GGAGTAGCAAATAATATTCTTGACAGAATTTATACATTTTAGCACAAAACATGTATATCA
TACAAAAATATATGTCCATGATCAATTGCAAGCAGAATGTATAGCATCATATACAGATCC
GTTACCTGGACATAAGATACTCCTCAAAATGTGAAGTCTTCACAAAGCAGGGTATGTAAA
TCTACAGGACAACACAACAAAATGACACCGATCTTAGATATTTAGAAGATCAGGACTAAC
TTAAAACTGAAAGTAATACAATAGAAGACTCTGTAATATTTTAAGAATCTACACAAACAG
ATGAATGAGCATGAAAACAAGAATCTTGGCGCCAGTAGAACATAAAGGCAAGGAAGTAGA
TGTGAAAAAAGAGGAAAAGAAACAACTACCCACTAACAGAATATTTTTACTACCTGCATA
CATCTTTCTTAAAACTGGAGAACATACATGTTAGGAGTTTAAAGATTTTCATGCTCAAGT
CTTGATAATGTAAAATTGATCTGACTGTGTTCATGTTCTAGATATTGCACTTTCAACTAT
AGTTGCAAATTCTGAGGGACCTGAATGAAATTAAATCGTAACATATTATCAGAGTTTCAA
TCCGTTCATGGCTGAGTTTTCTTTCGCTTGAAGTGGTAGGGAGAGACCTACTGAGCATAA
TGTTTAAGAACTGCAAGTTAAAAGCTGTTGTCCGTATTTGAGTAAACATCACTCCAAAAG
CTTGAACTACTACAAGTATAGTCTGGATCAAAAGGAATTCAGCACCCAAATTCTAGTAAA
CATGAAATGCATCGACCAATATTACAAAACTTATTTCATATCTTGGCAGATTTTTCAATA
GCTACTGCACATATCACAGTAAGAAATAAGAAATAAGGAGCACTCACATAGATCATACGA
ACATGGCTAGCTCTGGACGGCTGAAGATATTGTCTCCATCATCGCCTAGTGCAGGATAAG
AAGCAACAAGTGCATCTTGTGCACCAATATACAGCGAGTTGTAGATCTTCCAATATACTT
CGCGTACTTTCCTTGCTGGATGGAAAAGGCCTTGGAGGCAATAATTCAGAACCACAGCTG
CACCTAGAGCCACTCGCATCCCCTCGATAGCCTCCATGACGGCATTTATAACATGGGGAG
ATGTCTCGAATATGTTGGGCCAGATATAGTTAAGCAAGTGGACAAGAGCATCCTCACAAC
CCAAGCCAGCAACTCCCAGAGCCATATGCTTAACAGCAGATGCAGCAGTCTGCCTGTGTA
CCAGATCCCTGTCCATTAGGGCATCTTCGAGCAGGGGAGTGACAGCATATATGTAATCTT
TCCCCATCTCACCAATATACTCAAAGAGGAAAGAGAGAGACTTCAAAACACCATTCTGAA
CATTTAGCTCCGGAACTCGGTACTCATTCATGAGGGCGGGCAAAACTGTAAAAGGCGAGC
ACGTTTCAGCAACAATAGCAATTGCTACAGTAGTGCACACACGGTTCTGTCGCTCCTGCA
CCTTCAAGTTATTCAACAGAGTGGCTAACACATCCTGTGGCCCTATTGCCTTGGCGATAT
AACCAAATGTGTTCACAGTGGCTCTTCTGATACCCTTCTTGTGAGCCTTCAACATCTCCA
GCAACTCAAAACAAATCCTCATCCACTCCCTAGCTGGTACAAATTCTGCTCCACGATCAG
CAATCCTACCAACTAGATCAATGCAGTTCTCTTGGACCTTCTCATGCCTATTCTTCAAGA
TGGGGGTCAGACGAGGAAGGAGATCCTTGATTGGAGGCGTCATCTTAGTCATACCAATAA
CATTCACGATAGCCTTCAATGCTCCGAGAATTGAACCCAGCACCTCAGGATACTCCTCTC
CCAAGTACTCATATAGCACAACACCCAGGTGACCCATAAGCTGCTCCTCCTGGCACTGCT
TCATCACAATAGCTATCCTTGAGATCAGATCAGCAGCTTGCTGCCTAACTTTCGCACTCT
TGTTATTCAACCGCCACTTAATGGTACCACATATCTGAGGAAGATAAGGCTTGACCCTCT
GGCCAAGCGCATTCACAACAGCTCCAAAACCATTAAGCATGACATTTGCATCATCACTTG
TCTGCTCTTGGAAAGCATACAGGATGCCATCAATAAGCAGCTCCTCCAGGCGAGGATCGA
TATCCGAAGCACCCAAGTTAGCCACCACCTTCTCAATTGTTTCCATCACCATTCTCCTGT
AAGGCTCACTTTCATCTTTCAGATCCTCAACAATCTTCCCAACGATACCAGTAACTCCCA
CCTTGTTTGCCATCTCTACTGTTGTTTCCACAAGTTGCTTATAGTTCCTACGATCTAGGG
CCATTCTCCTAACCCAGAAGTGTTTGAAGAAGTCTGGAAGGATGTCACTCCGGATATAAT
CAGCCTCCACACCCTCTGTACTGACACACTGCTTAACAACCTTCAGGACAATCTTCTTCA
TCTCTTCGTCTGGGGACTGGAACTCTCTAATCAGGACTTGCATCACCTCCTTCGTGTAGT
AACTGGCATACAGAGCATCCATAAGAGGGATGATGAAACCAATAGCCTTCAAGAAGGCAG
CAAGGACCTTTCCACGGTGAGATCTGATACCCTTCCAGAGAGGTTTCAGGACACTATCAA
AACTTTCTATACCATAGGGCGCAGCAGCTTCAGCAAGTGCAGCAAGAGAGAGAGCTGTGA
TCGTCCGCACTTTCTGGTTCTCATCGCTTAGACCATGCTCAATGATCTCAACTAGGTTCT
TAAGGTGAGGCAGAACAGCGCAGCCCATGAGAATAGCAATCTGCTGAACAATCTTGATAC
CAGTGTGTCGAGCTTGCCAGGACTTCTTACTCTGACAAACGGCCTTTAAAAATGGGAGGA
GGGCCGGGATACCCAAAGCAGAAGCCACCACACTGAATGCCCTAGCAGTCGTATTCCTCA
CGTACTCGTCAATGTTATCAATATCCGGTCTCATGGCAGCAATCATAGTAGCAAGTCCAG
CAGCTTTGCTAAGATTTGAGATAATCTCCCTGCCCTCAACACGAGCATAGTAATCCTCAT
CAATCAGAAGTGGCTCGATAACAACAAGAATCTTGTGCACAAATGGACGGACCAGCTCAT
CCAGCTTATACAGTACCCTATCAATGACCTTCACCAGGAGATGCCGCTCCTGGTCCTCAA
GTGTTGGCTGCATGAGCAATGGCAGGATTTTGTTGAACAATGGGCCAGCACCAAACTCAC
GTGCTTTGTCCGTGAGCTGCCGGAGTGCCGTCTTCCGCTGTGGGGGTGTGCCGTTCTTTA
CCTTGAGCAGGAGCTTCATGATTTTTCTCTCCTTCTGCTCCTCTGGCGTTAGCTGCTCCT
CCTCGTCCTCATTCAGCAACGTCCCAAAGTACTGGTAATCCTCTGGCTTCATGAGTGGCA
AACCAGGACCCAAGTCCTTGGGCACATCAAATTGCTGCCCACGATTCTCCTCCGGAATAG
CATACATTGGTGTGCCCAGAGGTGTTGGTGTGGCAAGCAGCTTCCTTGCAGGGGTGCGTA
TGGGCTGGTATGAAGCTGGAGGCTCAAGAATCTTGTATCCCTCCTGCGGGAACATGGAGT
CAAGCTCCTCGTCAGTGAGAGGCCTGTTCCGCTCCTCAATGTCGCGCTCCCACCGCAAGA
GCTGGTACTGCTCCGGAGTCATCGGGCCACGAGCAGCAAGATGGCCAGGTGTTGGCGTGG
CAAGGTTCTCTGCCCCAAATGGTGTCTGTCCAGGAGTGTTGAAACCTGCAGGTGTCGCTG
CCGTGCCACCAGGTGTTGCACTCCCCATACTCGCTGGTGTCTCGTCCCACCTCGACCTCT
GTTTCTTGGGTGTTGGTGTGACAAGCCCACCAGGCAGCTTAGGAGTAGCATCCCATGCCC
CAGAAGGGGTGGCTCCTGGAGTAATGCCACCGGCTGCAGGGGTTGCATCTGCGTCAGCCA
TCCTCCCTGGAGTTGGAGTCTCATCCCACCTATTCCTCCTCACAGAGGGCGTGGCATCTC
CAACACGTCCAGGGGTGGCGTCCCAGCGCCCAATCCCAGGAGTTGCGTCAGGAGCATCCC
AGTCTGAGGTCTTGGACTTCTTGGCCCCAGCAGCGGCATCGCCGTCCTGCGACTGATCCC
ACCTATTGCGCCGTTTGGTCGCGGCTGGCTGGGGCTGGGGCGCAGCCTTCTTCTCCTTGG
CTTTCTCCTCCTCCTCCTCCTTCCTCTTCTTTGCGATTTCGCGCAGCACGTGCTCCTTCT
CCTGCTGCACCTTGCTCTCGCGCATGGCATCTGCGTAGGTCCGGACGGAGGGGTCCGGGG
TGGCCTCCCCGGACGCGAAGGCGTCGTGGCGCTGGGGCGAGATGATGCGGTCGAGGCGGC
GGCGGCGGTAGTCGTCCTCGCGGTCGATGATGCGCTGGGACCTCTTGGCGGGCATACCGT
CGTCGTCCTCCGAGCGGGGGATGTCGGCGGCGGCGACGGCGTGGCCCGTGTAGGACGCGA
GGCGGCGCACGGCGGGGTTGGTGGCGGTGGGCTCGGCGCCGTCGTCCTCGGGCGCGTCGT
CCTCGGAGGCCGGGATGGAGGTGTCGTAGCCGGCGAAGCGGTCGGAGCCGGAGCCGCCCC
CGCCGTAGAGGTCCTTGTCGAAGGTGACGGAGGAGACGGCCATGGGCGCGCCGGCCGCCA
GGGCCTCCTCCAACTTCCGGCGCTCGTCCTGCGCGCGCGCGAGCTCCGCGTCGATCCCGT
CCATGGCGGCGGCGCGGGGCTAGGGTTTCGCGAGGGGAGGGGGCGAGGGGAGATTGAGTG
GAAGAAATTGTTTGGACTTGGGAAAGTTGGGATCTGGCAAAGTAGATCACAGAGAGCTCT
GGGCCGTTGATCTGGAAAAAGAAAATGAACTGCCTTTATTTTCTGTGCCACGGAACGGAC
CGACTTTTTGTTAGCAACGGAAATGAACCGACTTAAAATCAAACATTAGTATTTTTTCTC
GCACAAGTGTACCTATCATATACTACTTCCTCCATTCCTAAATGGGAAGCACTCTGTGTC
GGCGCGCCGGTCCAACTGTTCGATCGGTCGAGCTCCAGCCATCAGATTTGGCTTTCGAGC
CGTCAGATTTGGCTTTCGAGCCGTCGGATCCCGTCGTCCCCATCCCTCCTATCTTCAACC
TCTTGCACGGGGAAAGGGGAGAGGCCCGCCTCGCACGCGCCGACCGCCTCACCTCACCTC
CTCACCGCTGGCCGCCCTCGCCGCCCTCACCTATGTCGCCTTCTGTGCATTTCTAACCTT
CGTGGATGTAGCAGCGTGCGCTCATGGTTGCAACCCTTGTAAAAAATAATACGGTTGCAA
CAAAAGAGAACGACAAATGTAGCAAAATTGTATAATGGTTGCAGCATTTTCCATCATGGT
TGCAACTCGCCCATGTCAACGGTTGTAGCAAAAAAACAATACGGTTGCAATAATAAAAAA
TGACTGATGTAGCAAATTTGTACAATGATTGCAGCATTTTCCATCACGGTTGCAACTCGC
CCATGTCAACGGTTGTAGCAAAAAAACAATACGTTTGCAACAAAAAAGAATAAGTGATGT
AGCAAATTTGTATAATGGTTGCAGCATTTTTCATCATGGTTGCAACTCCGGCTACAAAAC
TCCGGCGAAGTTTGGTTGCAACTCTCAAAGCGCAGAGGTTTGGTTGCACACCGCTTGTAG
CTTTTTTTAATAGATGCATACACACAGATCAGTCCATGGCAGGAGGCAGCCATGTCATCT
CCCCTGTGGCTCGGCCCGAGCA