Contig Data
morexGenes
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Map Locations of contig_58542 (5814 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_58542

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70783 3 682 bp AK248419.1 Not available Available None
MLOC_70784 1 180 bp None Available Available LOC_Os04g28820.1, FRAME:-2, EVALUE:4e-16, 13104.m02732 protein retrotransposon protein, putative, unclassified, expressed





CDS Structure of MLOC_70783






CDS Structure of MLOC_70784






Contig Sequence (5814 bp)

>contig_58542 5814 assembly3_WGSMorex_rbca.fasta
GCAAACCCCTCCTACCAAATGGGCGTGTGAGGATCTGTGGGGTTTCTGGACCCCCTGAGG
ATTTTTCTCTCAAATCCTTCCCAATCCTCCTTAACCAAACGAGGCCTGAAGGTCCGAAAG
AGACAAGGATGAGGCTCTAGTTGCTTAACCCAGTGCCTTTTTAGTGTTTTCTTTTTGGCA
AGATCAAACAAGATGTGTGTCTTCTCTATTAATATAGAGAAAGAAAAGATACAAAAGATC
TTTGCAAGTATATATTCAAGTATATACCCATCTTAGCTCAACAGAACATTCCTCATATCA
TTGTCCACCGATCCACAACCTCTAGCGAGCATTCATAGGGCGAACACCTTTGTAAATTTC
TACGTAGCAACGAATTCCAAGGAAGCAACTCTATTATTTTCACTGATGATTTAAGTCTAT
GCGAGATTTGTCTTGGAGGCCACCTGGTAGAAGAAATCCTGGTGGTCTGCACCGCGAGAA
GAATGAGTTGCCACTTGGTCGTGATTGTCATCTTCTCGCTGTCAGGTCAGTAATGATGGG
AAGATAGGTATTAGATACTATGCTTTGGATTCCTCGGAAGAAGACACTATGCTTTATGGT
GCGAAGACTGGCACATTATACGTCATGAACCTTCTTGCATCACTGTACGGTTTGTCAGGC
CGACTGAACCCAGTCGGCTTCGGTCAGGCCGAGGCCGTTACATTTTTGAAAATTCCTAAA
ATGACCAATATTTTTTGAAAACAATAAAAAATCTAATATTTAAAAAAAAATTAGCTGGTT
TGTGAGGGAGGTCACACATCAATGTTTTGCACTCGGTGTTTAAACATTTGGCCGCCTTTA
CTGTCATATATCGGGTCTCCATGCAGGCTGGTGTGGTCTCTGGGCCCTCCGCGGGGAGGT
TTTCGATGTCGCGGCCATCCATGGGCTCGCATGGTCTATGGCTTTTTTTTGTGTTACGAC
AGGTCATGCGAGAGGGTTGGAGCGCATGCAGTCACATGACTCACCCCCTCCCGTCTGCTT
GATGCGGAGGAGGCTCCCACACTATACGTCTTGAACGTTCCTCCGTCATTGTTCGGTTTG
TGAGGCAGGTGCCACATCAATGTTTTGCACTAGGTGTTTAATCGTCTGTGAGCGTGCTAG
TTATCGACCAGGGAGGGGATGAATAGGCTATTTTTATGAAAAGCTTCGAAACAGAAAATG
TATTCAAAGTATGCGAAAACGATACACGATCCGGTGGGGATAACAATCAAAGATCTAAGC
ATAGCATGCAATACTACAAATACATTCAGACAGATAGATCATAGCCATCATGTACTCTAA
GATGTATCAAGGATTAATTTAGGTAGTATGAAGATAAATGACAGTAAGGAACATCTTCGG
TGAACGTCTTCGAGTTGAGATGATCGAGCAATGACTTCACAGTATAGTACAGTAAGTAAG
AGAGTGAAAGGTAGAATAAGTAGCTTGACGAAGACACAAGATTTATTGAACCAGTTCCAG
TTGTTGCGACAATTGTACGTCTAGTTGGGGAGTCTTAGACCTCGTCTTCACCTTGTTTCC
CTTGAGTTGAGGTCACTTAGACCACGCCCAATCACTCAGGTAAGTCTTTGGGGAAGACTT
TTGAAACCCGTACAAACTTGGTCACCTGACAATCCACAATGACTCTTGGATTGTTCTAGA
CCATGGTTACTCGGCAATCCACAATGACTCTTGGATGCACTAGACTACGACGCCTTACCA
TTTGGAAGATCACGGTCTTCAAGTGTAATAAGTCTTCAGTTCTTTCAGAATACGACTTTG
GTAATGCTTAAACACTCTAGCTCTAGGTGTTTGGGTTTATCCTCACGGGATAGTTCTCTT
CCTCAGTGTCTTCGAGGTGGGTTGCTCCAAAACGACAAGAGCCGTATCTAACTCCGAGAA
GCCACCAACATATGGTGGAAGGGTGGCCTATTTATAGCCAACATGCAGCCCGACATGATA
TGACCGAAATGACCCTAGGTCAATGGCCAACTGACACATGTTCCAATGGTCGGACTTTAA
AGACACACGTGCAATATTACTTGGCTACAGACAATGCTAGTCAACCACCTGTGGAAGAGA
TTTCCTCTCATTGTCTATGCTCGAAGACATAGGTATTTGGGTTGAACATCACGTCAACGT
ATGACTTCGATCACACCGACCCCACTTGCAAGTACAGTGGTTCCTATGACTTAGGAAAGA
AGAAACAAAACAATCGAAAGACTTCGTCTTCACGTTTCATTATCTTCAATCGATTTCTTC
GCATACCACCAATGGCTTCGGCCATTATCAATGTCTATGGACGTTTTTGGGGGTCGACTT
TGATGGTTAAACCGAATCTCCAGGGACTTTTATCCGTGTTAACATGTGAACTCTCACAAA
CACATTATTCCCGCAACCATGTTTGTCTTCAATACTCAAAAACTAACAAGGGGTGGCACT
AGATGCACTTACAGTCTGGCCGCCCTTATATTGATATATCTGGTCCCCACGAAGGGTGTT
GCGGTCTCCAAGCCCTCCCAGGGGCGATTTTTGACGTCATGGCCATCCGTGGGCCTGTGC
GGACTAAAACTTTGACCGGGTGCCGTAGGGGTTTGAACCGGGGGTTTTCCTCTTATTTTG
TGTCACAACAGTTCATGCTGACGTGCCGGGCCATTTTGGAGCACATGCAGTCACAGGACT
CCCCCCGTCTGCTTGATGCGGGGGAGACCGCCACACTATACGTCGTGAACCTTCCTGCGT
CACTATCCGGTTTGTGAGGGAGGTGCTACATCAATGTTTTGCACTCTGTGTTTAATCATC
TGGATGCCCTTACATTGATATATCCGGTCCCCATGCAGGCTGATGCGGTCTCCATGCCCT
CTTCAGGGCGGTATTCAATGCCGCGACCATCCATGGGCTTGCGCGGTCTACGACTTTGAC
CGGGTGCCCGAGGGTTTTAATGAGGGGGGAGGGGGTTCCTCTTGTTCTGTGTCATGTCAA
GTCATGCCGACATGCCAGGCAAGGTTGGAGTGCATGCAGCCACAGGACTCCCCCATCTCC
TTGATGTGGGGGAGACTGCCACACTATACGTGTTGAGCCTTCGTGCACCACTGTCCGTTT
TGTGAGGGAGGTGCCACATCAACGTTTTGCACCGGGTGTTTAATCGTCTGGCCACCCTTA
AGTTGATATATCCGGTCCCCATGCAGGTCGGTGCAGTCTCCAGGCTCTCCTCGGGGCGGT
TTTCGATGTTGCGACCATCCGTGGGCCCACGTGGTGTACGACTTTGACCGGGTGACAGAA
GGGTTTGACCGAGGGAAGGTTTTTCCTCTTCTTCTATATCACGACATGTCATGCCGACGT
GGCAGACCAGGTTGGAGCACATGCGGTCACAGTCTCCCCCGTCTGCTCGACGTGGGGGAG
ACTTCCACACTATATGTCCTAATAAACTAATCATTGTCGTTTTTGTATGATTACTTTTAG
TACTCGGTAGATCGAGTACACAATTTTGTATTTTCTAGCCATGATGAAGTGAGATTGGAA
GTGCGATGAAAAGTAGTCCAGAATGTGTGAGAAATAAGGGGAAAGAAAAGAAACCCAACA
AGTAATCTCTACTATTAAAGCAAGATCGAACGTCGTGATGGTTCAACCACGACAGATGGT
GCGACCTCGCTAGCAGTTCCCCCTTTTTTTTTTTCATCCCTTCTTAAACCGATCGTTAAA
ATACAGAAAAAACCGGTTCGCACGAAACAATCCCACCCTCGCATGCACGTCTCCAGTCTG
CGATCCCCAACCACCGCTCCCCTCGATCTCTACCACCACTCCCTCTCCCTTATCTCTGGC
CCCACCCTAGATTCCAGGCGAGGCGGCGAGGTGGTGGCGAGGCGCTGATCTACTAGCGCA
TAGGAGAGGAGATGCCACCAGCAGGTCTTTGGGTCGATCACATGGCCCCTTCCCCACTGT
AGCCGTCGGTGAGCAGTTCGTGAAGAAGTTCTTAAAATCGGCATCCCACCCTCGCATGCA
CGTCTCCAGTTTACAATCCCCAACCACCGCTCCCCTCGATCTCCACCACCACTCCCTCTC
CGTTATCCCTCCCCCCACCTTAGATTCCGGGCGAGGCGGAGAGGTGGTGGCGAGGCACTG
ATCTGCTAGCCCACAGGAGGAGATGCCACCAGCAAGGTTCCGGGTCGATCAGAAGGCCCC
TTCACGCTGACGCCGCTGGTGAGCAGTTTGTGGAGGAGTTTTTGAGAAACATACCACCAT
CTGGGTTGATCTCCAATGGTTCGTCCCTGCGATGGCTGTCACTTCCTAAGGTGCACCTCA
TCAGGTGCTTTGCACGGTGGGAACAAAATAGTTGTTCTGAAAACAGTAGTTTGATAAAAT
AGATTTATTATTTGATTGATTAATGAGTAGCCACAAATTGGCTTCAGTTGGTCATAATTT
GAGAGATGATGAATACCTGATCAGATGTTTTATTCATCATGTTTCCTTAACGCATTGTTG
TTTTGTGACTTGCAGGTGATAGCTGCAACCAATCGTGCAGATATACTTAATCCTGCTTTA
CTCCGTTCTGGTCGCCTGGACCGAAAGATTGAGTTCCCTCATCCGACCGAAGAAGCAAGA
GCTCGGATTTTGCAAGTATGTCTCTTGCAATTTGTTAAAGGCTGATAACTCCTATTGCAA
AAATTGCTTACCTTTTGGTTTAGTGGACTCAAAGAAGTTTCTTCTGTGTTCTATCTTGTA
GATTCACTCAAGAAAGATGAACGTACATCCTGTGGACTCAAAGAAGTTTCTTCTGTGTTC
TATCTTGTAGATTCACTCAAGAAAGATGAACGTACATCCTGATGTCAACTTTGAGGAGCT
GGCTCGTTCAACTGATGATTTCAACGGTGCACAGCTGAAGGCTGTTTGTGTGGAAGCTGG
CATGCTTGCTCTACGGAGGGATGCTACAGAGGTTTGTGCTGAATCTTGTTCACTTGAGAC
ACTGGTGTCTTTATGGAAGTATCAATTTGTCGGTAGATAATGGAAGATGATAACCGCAGA
TGAAGTTGATTAGGATCTTGATAATCAGAAAATTAAATTCTAAACAGATCAAAATTAGGT
CTACGGTATTTCAGCATGAACTGTACAGCTTGAAATATAATGCGACGCCCAATGTCGCCG
TAGCCACCGCTACCTTGCCCTCCCTCCGAACCTTTGCGAGCAGTGCCCTGTATAGGAAGG
TCTTCCCGGTGCCTCCCGGGCCATCGACAAAAATACACCCCCATCACCGGCATCTACTGC
TGCCAGGATCTCGTCGTATGCAAGCCTTTGCTCATGGTGAGGCTAAGTATGGCGCTGCTG
CAAGGCCAAGTGCGTGGAGGAGCACCTCCATCCCCCAAGTACGACTTCCCATCTGACGCC
CATGAAGCGAGTACTCTGCTTCTCTCTATTGCCTACAAGGACAGATTTACGTGGAGTAGA
AATTATAGGATTATAAGGTTGAATATAAGGAGGAACAGAACATATGGCTAGCTAGATATT
TGTTCGGGAATATTTTCATGTCAACCTATGAGAGCCCCTTTTCTGCCATGGATTTGGATT
CTTTGCAGATGGCGTAGAAGAGAGATGAGAAAGATATGCAGACAACAAAGTTTCTCAAAT
GGATATGAACAGTTTAGTTCCTCCCTCTGTTATGTTTCCACAACCTGAGATTTCCAACTC
CAAACTTGACCTCCCTACCAGGTACGACTATCTCATACTTGACATTACCTTATTGTCACT
GTCTCAGCTACAAGCGGAATATTTGGTTTTTATAGGTTGCTATTTTTTCTTTGT