morexGenes - Barley RNA-seq Database

Contig contig_5846
Source Contig contig_5846
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_5846 (6260 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_5846

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70744	1	504 bp	None	Available	Available	None
MLOC_70743	4	2002 bp	AK354541	Available	Available	None
MLOC_70745	1	1408 bp	AK365929	Available	Available	None
CDS Structure of MLOC_70744

CDS Structure of MLOC_70743

CDS Structure of MLOC_70745

Contig Sequence (6260 bp)

>contig_5846 6260 assembly3_WGSMorex_rbca.fasta
CCGCGAGAGCTCCACCCCTCCCATCGCCTTCCGCCACCTGCCGCCCCCGGACTACCCCGA
CCCCGACCCCCACCCCTTCCTGCAGATGCTCGACCTGCTCCGCCTCACCGTGCCGTCCCT
CCTCGCCTTCCTCCGCTCCCTCCCCTCCGTCGCCGCGCTCGTCCTCGACCTCTTCTGCAT
CGACTCCCTCGACGCCGCCGCCCAGGCTGGCGTCCCCGCGTACATCTACTACACCTCCTC
CGCCGGCGACCTCGCGGCGTTCCTCCACCTGCCCCACCACTTCGCCACCACGGAGGGGAA
CTTCAAGGACATGGGCAAGGCGCCCCTCCGCTTCCCTGGGGTCCCGCCGATCCCGGCGTC
CGACATGCCGCACACCGTGATGGACCGCGCGGACCCGATCTGCACGATCAGGGTCGGGCA
CTACGGGCGCATCCTGGAGGCCCGGGGCGTGCTGGTCAACACCTACGAGTGGATAGAGGC
GAGGGCTGTGAGGGCGCTCAGGGAGGGCGTGTGCGTCCCCGGCCGCCCGACCCCGCCGGT
GTACTGCATCGGGCTGTTGATCGTGGAAGGCGAGGCGGCGGCGCAAGGCGAGCGGCACGC
GTGCTTGTCATGGCTGGACGCGCAGCCGGAGCGGAGCGTGGTGTTCCTCTGCTTCGGCAG
CATGGGCGCCGTGTCGGCGGCGGAACTCAAGGAGATAGCGCACGGGCTCGACAACTCCGG
CCACCGCTTCCTGTGGGTCGTGCGTACCCCTCCGGTTGACCCGGCCAAATTCTTCCTGCC
GCGTCCGGAGCCAGACCTGGATGCGCTCCTCCCCGATGGGTTCATGGAGAGGACACGAGA
TAGGGGGATGGTGCTGAAGATGTGGGCGCCGCAGGTGGAGGTGCTGCGGCACGCTGCCAC
CGGCGCCTTCGTGACACACTGCGGTTGGAACTCTGTCCTGGAAGCCGCGTCGGCCGGCGT
GCCGATGCTCTGCTGGCCGCAGTATGCAGAGCAGAGGCTCAACAAGGTGTTTGTGGTCGA
CGAGATGAAGTTCGGAGTGGTGATGGAGGGATATGATGAGGAGCTGGTGAAGGCTGAAGA
GGTGGAGAAGAAGGTGAGGCTGGTGATGGAGTCAGAGGAAGGGGACAAGCTGAGAGAGAG
GCTGACATTGGCCAAGGAGAAGGCTGCTGAAGCACTGGCACACAGCGGGCCGTCACGGAT
GGCGTTTGCTGAGTTCTTGAAGGATTCGAAGCTTTCGACATGATCAAGCACACAAGATAG
CAACGGGATTGGTCTTGGAATGTGTGATTCTAATGGTTTGCATCAATTCCCACTTTGAAT
CGCGAACTTGCCCTTGTGGTGTTAAGAGGATGCGGTGAAAGTTATTTGAGGCATAATAGC
TGCTTTAGCAATATACTATTGAAATGATATGTGGTAGCTCTGTGCTTCTGAATTCCAGTC
TGAAGCTTTCCTCAGTTACTATGTTGTATTCAAAATTGACAGTACAGAGGATCTGTTGTA
TTTAGCACATGCTTCCTTGATGAATTGTTATGGTTATTATTGTTAAGCTTCATGCACCTA
AATGCGGAAATGCGAAATCACAATAAGCGCCTAAATGCGGAAGCATGACCTACTCATGAT
GTTCTTTTCTTGGAAGAACTCAGGTAAACCAACTACATAAGTGGAGCTTTTTCTATGTCA
GTTTTTGTTCATTGCATTGCGCCTATAGTTGTCTCCAATAACGGTTTGCATCAATTCCCA
CTGAGAACTATGAACTTGCCCTTGTGATGTTACAGGACACGGCGAAAGTTATGCGGCCAT
ATTAGCCGCTTCAGCAATATGCTATTGGAATGATGCGTAGCTAGCTGTGCTCCTGAACTC
AAAACTGAAGTTTTCTCAGTTGTGTTGTATTTGCAAATGCTTTCTTGATGAATTGCTACT
GTTATTATTTCAAAAATTGTACTGGTGCTGTGAGCCCTCCTACGCATGACACCGAAATGC
GGAAGCACAATAAACGCCAAAATACTGAAGCACAACCTACCCATGATGTTCTTTGCTTGG
AACTTGTAGGAACTCAGATGAACCAACACTACTTAAGTGGAATTGTTTTTATGTCAGTTT
TTATTCATTGCATTGCCTCTTCAATGTTTTCATGGCCTCCTGTTATGCACGCAAACTATT
TATGTCAGTTTTTATCCATTGCATTGCCCTTTTAATGTTTTCATGGCCTCCTGTTATGCA
TTGTTGGCCTCATTGCTACTTGATGATGTATGTAGTGGCATTGTAGGCACCATTTTCATT
GGCATGTTGTTTTAACTTTAGTTAGTTATGTGGAGCATATAAGCTAGACTGAAATTATGT
TCCTGTTTGCTTTTGAAAGCCTGCAAGACTAGACAATAATTAGCTGATTTGCATGCTATC
ACTTATGTAAAGGTTGTTCCCATGATAATACCCCCTCCGCTGTTTCATTGGTGGAGTGCT
TCAAATGGTACACCACATAGCTAGTGTACTTTCAAGTATCTTGCTGCCATTGTGAAATAC
ACCAGTTGGGTTCTTTTTTTTCTTTTCTTTTTTTTTGCGAGGAAATTTTGGAGAGCTTTA
TTCAAAAAGCGCCCGAGTCATCAGCCAACAGGCTGGTAACCAGGAAATCTAGGGCCGAGG
TCAACTGCTTGTCAGCGTCAAAGTGCAAGCATGCTTTCACAGAGGTGAGCTGAATGGTTC
GCTGACCTTATTACATGCTGAATATCAAAAGAAATTAAACTAGTAGCTAACTCTCCAATT
TATAAAAGGATTGGTGCACCAGTTGAAAGGGATTGAAGGTATCGAAGTGATCGAGGGCAA
AAGATAGCAAACGGGATTGGTCTTGAAATGTGTGATTCTCATGGTTTGCATCAATTCCCA
CACTGAGCTATGAACTTGGCCTTGTGGTGTTAAGAGGATGTGGTGAAAGTTATTTGACGC
ATAATAGCTGCTTCAGCAATATACTATTGAAATGATATGCCGTAGCTCTGTGCTTCTGAA
TTCCAATCTGAAACTTTCCTCAGTTATGTTGTATTCAGAATTGACAGTACAGAGGAGTGT
TGTCTTTAGCACTTGCCTCCTTGATGAATTGCTATGGTTATTATTTCAATTTTACTGGTG
CCGTGAACCCTCGTACTCATGACGCTGAAATGTGAAATCACAACAAGCGTCTAATACTGA
AGCACAACCTACTTATGATGTTCTGCTCTTGGAAGAACTCAGGTAAACCAACTACATAAA
TGGAATTGTTTCTATGCCAGTTTTTGTCCATTGCATTGCTCCTTCAGTCTTTTCATTGCC
TCCTATTATCCCCGCAAACAATTGATTTAATCTTTGGCTTCATTGCTACTTTATGATATG
TGACATTGTAGGTACCATTTTCATTTGTCTGTTGGAGTGTTGGTATAGCTTTAGTTTGTT
ATGTGGAGCATATATATAAGCTAAGCTGAAATATGTTTCTGTTTGACCTGCTCCTTTAGA
AAGCTTTTAGAGACTAGACAAGAATTTACTGATTTTGCATTCCATCACTTATGTAAACGT
TGTTCCCATGATAATGTGCCCTCCATTTTGTTCACTGGTGTATTTTCAAGTATCTTATTG
CCATTGTGAGACACACCATCGATTTGGTTCTTGATTGCCTGCAATTGCAATTACCGATGT
GAAATTCGTATTATGTAGTCATGGTGAGTTACTGGGTTATAGTTAAGCTTTGTCCCTCTA
TGCCCACGATAATGATTCTCCCTGCTTAGGATTAGTATACGGGCTGTATAATATTTTGTA
GAACAACCAATTTCACAAATTGTAAAAGAGACTGCTAGGAGTTAAGAGAGAGATTTTTTT
GAGAGAAGTGCATACATCAACCCTCAACTCCTGGGTGGGTCTAATATACACCCCTCATCT
ATTATACCATCTAAGTTGCACCCTCCAACTCTCAAAACCAGACGAATTACCCCCTGTCTC
GTCTTGACCGTGGTTTTGGTCCAGTCAGCAATTGTCGACCAGGTCAACTCGTCCAGTCAG
CACGCCATGTTCGTGATGAAATGAATTTATAATCCATAAATCTATAATTTCCGATAATTC
TGAGAATATATTTTTTGGTCAAAATTTGGCAGCATTTTGGTGCCATTTGTGCATCAGATG
AACAAATAAAAAGGCTTGAACAGAACTTGGTCTCACATACATATAGATAGGTCCGAAACA
CACATACATAGGTCTCACATACATATAGATAGGTCTGATACACACATAGGTCTCACATAG
ATAGGTCTGATACACACATAGGTCTCACATAGATAGGTCTGATCGACACCTAAATCTCAC
AAGCACACAAAAAAATTTCAACATTCAAATCCCGGCAAGCTTCAAAACCGAGCATATTTG
GCCTTGCCAGTGCCATTGCCCTTCTTACTGCCATTGCGACTGCTCCTCTCTTTGGTCACT
TTGTTGCTAGTTGTCGCGCGAGAAGTACTAGTGCAGACATTGACATTGACATTCGAGCTT
CCATGTTAGGTTTGCTGCAAGCTCTATCACAATATGTTAGGTAATAATCATTGCCATGAC
AGTCATAATGAACAGACTGTTGTATTTAACGCATGACTCTCTATGATTCGGTGCCGCCAT
TATTCGGTTTGATTGGTATTAACAATTTCAGCGAGCAATGAGCGCTGCTGCACTAGATGG
AGTAATGCAGTAATACAAACTACTCCCTCCGTAAACTAATATAAGAGCATTTATATCACT
ACTTAAACTAATATAAGAACATTTATATCACTACTTTAGTGATCTAAACGTTCTTATATT
TGTTTACAGAGGGAGTATATTTTTCTCTTGTGCTGCTGAGAAAATCTGCATTATCTGAAT
TCTGTAAGTCGTCACTACCATCCTTCCAGAATCCAGAGCAAATCTGTCATCCAGCTTGAT
CAATTGTTGCACCCTCCATTTTCCATCCTGCTGTTCTCCAAATCCCTCAAGAACTCTGCG
AATGCCACTTCAGAAGACCCGCCTTCGCCGATCGCGTCCGACGCCATCTTCCTCGCCGCC
GCAAGCTTCTCCTTGAGCTTCATCCCTTCCTCAGTTTCCATCACCAGCCTCACCTTAGCC
TCTATCTCCTCCGCCTTTACCATCCTCTTCTCATACCCCTCCAATGGGACGGCGATCTTC
ATCTCCTCCACCATGAACACTTTGTTCAGGGCCTGCTCTGCATACATCGGATAGCATATC
ATCGGCACCCCTGCCATGATCGCCTCCAGCGTCGAGTTCCAACCGCAGTGCGTCACGAAG
GCGCCGGTGGCGGCATGCTGCAGCACCTCCGCCTGCGGCACCCACATCTTCAGCACCATG
CCTCTGTCTCGTGTCCTCTCCATGAACCCCTCCGGGAGGAGCGCGTCCAGGTCTGGCTCC
GGGCGCGGCTCGAAGAATTTGGCCGGATCAACCGGAGGGGTACGCACGACCCACAGGAAT
CGGTGGCCGGAGTTGTCGAGCCCGTGAGCTATCTCCTTCAGCTGCTCCGCCGATACGGCG
CCGATGCTGCCGAAGCAGAGGAACACCACGCTCCGCTCCGGCTGCGCGTCCAGCCACGCG
AGGCACTCGTGCCGCCGCGTCTCGCCGTCCCCGGTCTTCTTGCCGTCGTTGACCAACGGC
CCGATGCAGAACACCCTGGGCGTCGGCCGGCCGGGCACGCAGACGCCGGCGGCGAGAGCC
TTGAGAGCCGTGGGCTCCAGCCAGTCGAAGCTGTTGACCAGGACGCCCCTCCCTTCGGCG
ATGCGCTTGAACTGGTACATCCGGGCTATGGTCATGTCCAGCTCCTTGTCCTGCACCGAC
AGCGGCATGTCCACCGCGCGGATCGGGCGCATGCCGGGGCAGCGCACGAGCGTGTCGCCC
ATGTCCTTGAACGACGGCAGGCCCGGGTAGAGGTAGGGCATGTTGAGGAAGAGGGCGAAG
TCGCTTGCCGCGGATGCGAAGAAGAAGTAGGCGGGGAGGGCGAGGTCGGCGGCGACGTCG
AGCGCGTCGACGCAGAACATGTCGAGCAGCAGCGCGTCGGCGGGGGCCGGCAGCGCGCGC
AGGAAGGCCCGGAGCGCGGGATTGGCGAGGCGGAGCGTGTCGTGGGCGCGCTTGATGGGG
TGCGCGGCGGGGTCCGGGCTGGCCGGGGCCGGGAGGAGACGGAAGGCGATGGATGGGTTG
GCCTCGGCGAGGCGCGCCACCGCGGCGGCCGAGGTGGCGTCGCCGTCCGGCGGGTCGACG
ACGGCGACGACGGCGCCGTG