Contig Data
morexGenes
Links



Map Locations of contig_58447 (5466 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_58447

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70735 2 750 bp MLOC_70735.1 Available Available LOC_Os02g05890.1, FRAME:+3, EVALUE:1e-31, 13102.m00650 protein EMB1303, putative, expressed





CDS Structure of MLOC_70735






Contig Sequence (5466 bp)

>contig_58447 5466 assembly3_WGSMorex_rbca.fasta
AAAGGCCCCGTCCCCACTAGTGCCTTATTTGTCCCCGTATTGCTTGGTTTTGGATAAATG
CTACTATGGAGTCCATCCAATTCTGAGCCAATGATAGCACAACTTGTGTCGGGAACAACT
GTTGTCGGTGTCAAAACCAACATATCTCGGGTAGGGGGTCCCGAACTGTGGATCTTGGAT
CAATGGGTAACATGAGACAAAGGAGACGATGTTTACCCAGGTTCTGGTCCTCTTGATGAA
AGCAAAACCCTACGTCCTTCTCTTGTTTATATTGATGACAGACTATACCTCAAGATCGTA
TAGTGTAGTCTAAACCCTATCAGTAATGAACTTAACCCGTCCTATGGACTAAAAAACCCC
TGGTTTATATAGATATCAAGGGTACTAGGGTTATAGAATGTCAGTTACACCAAGGAGAAA
ACATGTCGATTATCATGTTGTCGTGGGGCGCACACCAAGTCTCCGAAAGAGTACGTCTTG
GATACATCATCATCTTGTAGTTCGGGCTCCAGTGATGACGGCCCAGGAGTCCAACCCATG
AAAATAGGTAAGCGGCCCGAGGACCCCTTAATTCCGGACTCTCTCAACTTCCACCCGGTC
CATCCATGCATTTATCAAAATAAGTACATCAACTCAAGCATAGGAAGTGTACATGATGGC
CTAATGAACTTAAAAACAAAAAAATGTGAACTTAATAACAAACAGTTACCTTTTGGCGAG
TTTCCAAACTAAAAAATCAAACGTTTTGTTAGGAGGTTATGTTCGTCTTTGTGGGGAATT
TATTTTTGACAAGAGTTCACTTTATTCGGGAAGGTCCACTTCATCTATGGGATTTTCATC
ATTTTAATAGGGAGAGACGAAAATTTGTGTGAATGAAGTAGACATGGCCACAATGAGTTT
GATGACTAAAAACGACCTTCTCATGGGGAAAGGAAACTTCTGCGCGCTATAGTGAACTTC
CCGGCATGAGAAGTGAATTTCAAGAAGAAAAACAAGTGAATTGCATGCACGCAACTAGAT
TTCGTTCTATTTTTGTAATTCTATGTTTGAATGATAGATTATATGCCATTAGAAAACTAT
TAATTAGTGCGTTTATCCTCCCTTCGTCTCTCCTCCCAAGGAAATGAGGCTAGGGTTTTT
CCTCCCATCGACGGTGCCACCGATCTGCCACATCTCCTGCGGCCTTAGGGCCATGGGTGT
ACGGTGGATCCTGGCCCTTATCATCAGGAGGGCTTCGTTTTTAGGTGCTTCGTCAAGTTT
TGTTCATACGTTTAGGAAGTTTCTCCACGCCGGCGTGTCGGCGTTGCCGGACTTCACGTC
GCGGACCCACACCTTCTCTTTCTACCACTCCTCCACCGGAGGGCAGAGGAAGGACTCCCG
ACCTCCTCGTCGTTGTGGCGCTTTCGTCCGTCGAACCCCCCTCAGCCACCCGGACAACCA
CCAGCCGTGGACATCTCCGACAACTTTCAATGCGTAACAGCGCCGTAAATCGTAGTTAGA
GTTCGGGAGATTTTCGCCGGAGGAGAGGAAACGCGGTGGAGGCGGATGGGGGAAAAGAGG
GATGCGAACCCTAAATCGTCCTGGAGCCGACATATATAGTGGAGTCATGGGCGGTTTACG
ATCCTCCCACAAATGTTTTATGGGCCGAGGCATGTTTACGGGGCTGCTCAGGCCGTTTTT
TTGGTTGTCCCATAAACTGCCGGAAAAACGCGTTCCGATAAGGTTATACGAGATCTGGTA
GAGGTGCCCCCAAGCCTTTTGGGCTCCTCGTGATACTAGCTTGCGTGGACCATTGGAATA
CAATTGGAGTTGCTGGACCCATGTGTAATTATCAGACTCATAGGTTTTTTTTGCAATTTT
CTCATAGCTCCTCATATGAGAGTTGGATGTTACTAGATCATAAACCCGTCAATTTCTTTG
AGTTTCGGTCTATCATTTTTTTCTATTTCCTTTTCCCTCTCGTGCTTTTACTTTTACGAA
CATAACATGCGTGCAATTGTAGTCGGACGTGCACAGCGAATGTGTAATTGTGCTAGGGCA
GGGGGACATGTTGGTTGCATGCGGATAGACGTGTGTGCATTCATAATTGTGCGTGAGTGA
CTTATATATTGTTGTGCTAGATCGACATATGTATTGCAGTTATATACGACGGGGTGAATG
TGCAACTATAACTACACGTGGTTGACGATGTTGTAGTTGCAAGTAGGAAAAATAGAACTA
AAATAAATGATGTAAAACATAGCAAAGAGAAAAATAAGAAAAAAACCGCATGACACCCGA
TGGTTTAGGATTTGGCTGAGAGATATTGGTATTGCTGCAGTAGAACAAATTTGATGTAAA
TTTATTCTACAAATCAAATCATTTATTGTTTGTTACATACTCTATTGGTTCGCAAATACA
GTATAAGATATTTTAAATTTTCTTAATTAGATGTACACAAATAAATTTAGTATGTTTGTT
CATTTATTTGAATCCATATATAATCAATATTAAAATATCTAAACATATTATATTTGTAAA
CGGAGGGGGTATTTGTTTCACCGTGTCTCGTATATCAAACGATGTAACCATTTCCCAAAT
CAGCTAAGTTAACCATGATGACGTTCCAAGAAACATATTTGCTTTTACAACGCTAAAAAA
GAAAACATATTTGTTTCATAGACAAGAGATTGAATGAGAAGTTTCTTTTTGTGATGCGCA
GAATGGGCCACAGAAAAACTTGAAAATGAAATAAATCTACCAAACAAATCAAACAAAAAG
AAAGTTAATTTCCTACAAAGCCCTTTTAAAAATCTAATTTAAGAAAAAAATGGCCCTCCT
AATGGATAACCTTCTTCTGCCCATGAACACCACCACACCCAGCCCTCCACCTCCTCCTCG
TCCCTCGCTCTGACCCTCATCGAGAGCTGCAAGGTAACCTCGCCGCCCTCACTCCGTTGC
AATCAGACATCTCCTCCTCCTCACCGTCCTCCATGTTTCTGTGATTCTCTCGTCCAGGGC
CTGCGCGGCACCACGAGACCAGCTCGCTCTGTCCACGCCGCCGGCCGCCATGCTTCCGCT
CGCCACAATGTCCGCGCCGAGCTCGCTTCTCCTGCGCCCCGCCGCGCGCCACAGGACGGG
GAGAGAACCAGGTTGGTGTCGCTCGTCTCACCCATCCATCGCCCCGCCTCTGCTCTACCT
ATCTTATTATCCAACAGCTGCCGCCGGGACAAAATTTCTGGCTGCCATTTTGCGACTGCA
TTCTCGCATGTGCATCGAGTCAAATTGCAGGGGCTCTGTGTTCTGTGGCTTCACATTTCT
GAAAATTTTGCAACCCCACGTACTAGGGAAGATGGTCAATTCTAACTGCAATTTAATACT
GGTAGTAGATGGTGCTTACTGCTAGTATAGTTTTTGTTTACCAAAGCTCATGCAGAACTT
ATAATATTATGTGTAGGACGAAGCTGGGGAGAACCATCTATCTCGGGTTTGCAATCTCGG
AGTAATAAACTCGGCAACGCCATCTGTGTGAAAGCAGTAAGATGCGCCTACTTGTTTTGT
GCGGTGCTATGGCATACTTGCTCGTCTTCTTTTCTCGCTGTTACAGATTATAGTATACCT
GGTTAAATTATTTATAACTTATTAGGTGTAATTTGTTAGAGTAGTCAGAAAGCAATCAAA
AGGTTTCTGGCACAAAAATGAGGAAGAAATCAAGTAGGTTTTTGTCATAAGAAAAGGGAG
CAATTCAAACAATCTGAAAGGTTCAAGGCCTTCAGATTTTAGTGGAAGCCAGGATTTTTT
AACTTGCAAAATAGCTCAGCGGGGTAATGTCCCGAAGCGAATATATCAGACATCACCACA
AAGTTGGAAAACCAATAATGTACGTATTATAACATGACAAGGACCGTCTCGTATAAAATT
GTGTAGCTGGAAGATTATCTGGCCTTGCAAACAGAAGGGATCGGTATATTCTACAATTTC
TACGCAAGCTATTCATGCTAGCTAGGCAAAAAGAGTGCATGAGAGGGGATTTGAAGCCCT
GGTTGATTTTAAGCTTCAGAGTTAACTTGTTCTAGCTTAAAATCCACAAAAAAACAGACG
TGTTTTTTTCCACTGTGCATAGCTGAATTCCTACATTCACCTGATTGGTGTATCTAGAAC
ATGTACCGAAATAAGGCTGTCTAGTTCTAGCGAAATCTTTTTACCGTCGTCTGTAAGCCT
GAAATGTTAATGTTGTTTGATCTTGTATATTACAAGTAAACATGGTATAGTGCTTGGTTA
ATTTCGTTTGATTCTGCACCCGTTCCAGCAAATTCAAAAGAATCTCACGAGGATCGTCTC
CGAATGTTTTTCCTGCAGAACATAACGTGCTGCGCCAACCAGACGCAAACCGCGAAGCGC
AAATCGTTCTCGGGACCCACCTCTCCACCGTCAGGCTCAGTTAAAGGTAATGAAAGGCAT
CTGCATTTTGCACAACCCTGCTGTTCTTTCGTGCACTGCAAACCTGTGCTTCCATTGGCA
CTTGCCACGCGGTCTCCTCACTTCTTTGCTTGATATTGGCACCTGATCGCAGAGAAGGTG
AAGCCGAGGCTCGACGACGGGGGCGTCGGGTTCCCGCCGTTTCGGTTCGGCGGAGGAGGC
GGGGGCGGCGGCGGTGGCGGCAGCAGCTCCTCCGGTGGGTTCATCCTCTTCGTGATCGTT
TTGCTCCTGGACTACCTGAGGGAGTTCGAGAGGAACCTGCAGAACGGGCCGCGGAGGGGC
AGCGACTACGACAGCGGGCTGGCACCACAGTAGTAGCTTCATTTTAGTACGTAGCTTGTT
TCGCAGACAGTCGGGTGATGGTCGGTGGTTGATGTAAGCGGTGTTATCAGATTAGAATTG
CTCGTGAGAAATGAAATGAGGAGTAGCAATTTTGGTCGTTGGATTGGACGTGGAGGGCTA
AGATCGAACGGCAGGAGCCACTGGCACTAATATGTCCACTTTTATGGCCTCTTTGCCTGG
TTCACACAAAGCACAGAAGAAGCATAGGAAGATAAAGCATGTCTTCTCTTTTAGGCCGCG
CTTGGGATGGTTGCATTTCAATACGCGAGTATTTGGTTTACATTTGTATTTTACTAGCCG
GTGAACAATCTCCGGCTGAAAACAAAATGACGGCCCGAAGTCTGTATCTTTTACACGTGT
ATTTAAAACGGAAACGACGATTCAAACAGAGTCATAGCCGTAAAGACCATGCAGAAAATA
AACATATAATACTTTTTTTTATAACTTAACACTTCTGCTTCGATAGACCTCTAACAGACG
GCCAGTTTGACCGATATCCCTTTGTCACGAAGGGCACGATGGACATTATTTGAAAATAAG
CCCCCGCCCGCCACGCCGTGTATGCATACGTATATGGTCCAATTTTTAGCACACATGTGC
ACACCTGCCGTGGTTAACTGGCGGGTTTTTTGGCGACGTGGGGCACTAATAACCCACAAG
TATAGG