morexGenes - Barley RNA-seq Database

Contig contig_58436
Source Contig contig_58436
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_58436 (6916 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_58436

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70730	1	1222 bp	MLOC_70730.1	Available	Available	LOC_Os08g38900.1, FRAME:+2, EVALUE:3e-126, 13108.m04136 protein caffeoyl-CoA O-methyltransferase, putative, expressed
CDS Structure of MLOC_70730

Contig Sequence (6916 bp)

>contig_58436 6916 assembly3_WGSMorex_rbca.fasta
AAGACCATGTTATCCCTAGTAATATAATAGAAGTTATTAAATGACATGCTAAAAGTAGAG
GCATTGTTGGAAAAAGAGTCAAAAAAGTCCCAAAAAGTCTCTCCCATAGGGACTTCTTAC
TTTAGTTCCAAATACCCATTTTAGTTCCTAGAAGTCCCTCCTGTTTCTTTCACATAAGAC
TAAAAGGAACTTTTTTAGTCCCTACATCAAAAAAATCTCTGGAAAGAAACACCCCCTCAG
TCCCTCAGTCGTTGATGGACGCTCTCCCAATTTTCCTAATCAAAATTGCATCCACGATCG
ATACACAGCGGAGCAGGTAGGTGGCGGTAGGAATCTGATCGTGATGGATCATCGCCATAC
GTGCATGTGGCATGGGCTAGCACGATTGGAGGGGCCGGCACGCCAGACAAAGAATAATTA
AAGCAAGAGAAAAAATACTGTGCTAAAGCTGGTAGTGGTCGATGGTTTCCTCTTTTTACA
AGGCGAGTGGGCGTATTCTGGTAGGTGGATCCATGGACACCAACCCCGCCAGCGGCCGGT
GGATAAATACAGGCACGTCGAGGCTGTGGGTGGACAGACACTCGATCCAACTCATTCCCC
TACCCTGCTACCCAGGCACCACCAACCCAGGCAGAGCTAGCGACCAGAGCCATGGCGCCC
AGCGGAGACAACACCGTGGCCAACGTCCACAGCGGCATCGACAGCACCAACAAGACGCTG
CTCAAGAGCGACGCCCTCTACACCTACATCCTCGACACCACCGTGTTCCCCCGCGAGCAC
GAGTGCATGCGCGACCTGCGCCTCATCACCGACAAGCACCCCTGGTACGTACAGTATCAT
CTTCTTCCTCTGCATGCACGCTCCCACGTCCATCTCGATTGATCGATGTTACTAGCTAGT
TACTTGTGGTTGCTGATAGATCTGGCTCTGATTCTTTGGATTCAGGGGTTACATGCAGTC
GTCCTCGGACGAGGCGCAGCTGCTGGGGATGCTGATCAAGATGGCAGGGGCCAAGAAGAC
GATCGAGGTGGGCGTGTTCACGGGCTACTCGCTGCTGGCCACCGCGCTGGCGCTCCCCGA
GGACGGCAAGATCGTGGCCATCGACACCGACCGTGAGTGCTACGAGGTGGGCCGCCCCTT
CATCGAGAAGGCCGGCATGGCGCACAAGGTGGACTTCCGCGAGGGCACCGGCCTGGAGCG
CCTGGAGGAGCTCCTCGCCGAGGACGATGGCGCGGCCAGCTACGACTTCGCGTTCGTGGA
CGCCGACAAGCCCAACTACGTGCGCTACCACGAGCAGCTGCTGCGGCTGGTGCGCGTCGG
CGGCACCATCATCTACGACAACACGCTCTGGGGCGGCACGGTGGCGCTGCCGGCGGGCAC
GCCCTTGTCCGACCTCGACACCCGCTTCTCCGCCGCCCTCAGGGACCTCAACGCCAAGCT
CGCCGCCGACCCGCGCATCGAGGTCTGCCAGCTCGCCATCGCCGACGGCGTCACCATCTG
CCGCCGCGTCGTCTAGACGGGCGTCCGGTCAGGTCCGGCGTGAAGCATCGGGATCCGCCG
TGCGTGGAGTCGATTTCGTTCCTTACCAGCCGCTTCCCTTAATCAATTGTATTATTTTTC
CCTGCCAGCGCTGGCTAGCGTGAAGCATCTGATGGTTTCGAGTTTTCAATAATACTTTTT
TGCTTTCGAAATTTGATGAGAGGAGAGGGAGGAGTGGTTCTACTTATGTACTGTACTCTT
AAACTAAATATGGTGTTGCAATGACGAGGTCGCGTATATGGATGTCGTTGTCACCCGCCT
CATTGTTAAGTTTATCTCACTTGCATTGTTAAATGCGAGAAGGTCAGACACGCCGGATGT
ACTGTAACGTATAGCGACATGAAGTGTTGATTTAAACAACATGCAGCGACGGGGACACCG
CGACTTGTCTGGTCGATGTTGTGCGAGCTGTACAACCGCCATCCCAGGCGTCCGGTCAGT
GACCAAAGGAAAAAAAGAGATCGAAATATCACTTTTGTACATGAACTTCCATATAAAAAC
AAATATAGATAAGATATAAGACTCGCCGACGTGTTTAATTAGTCCGGCGAGTCCAACGAC
CCACCTCAGATCTTTTTTTTCTTTTTCTTTATTCATTATTTTTTCTTTTTTCGCCTCCAC
CAACTCTATAAATGAGAAAATGAGAAATGCAGATATATGTACGCCTAAATAAAAGATTAA
AATGAACACGCTTGATCACTAACCGAACACGTCCGTAGACGTTTAAAGAATCAGATTTGT
TAAGATCAGTTATAGACGCTCTTAAACTCTATTTAAAGGATCAAATTTGTTAAGATCAGT
TGTAGATGCTCTTAAACTCTATGTTAGAGCATCTACAATCGACTTTGCAAATCCTACCCT
CTATATGTTTGGAGACGTGTTCGGACGCGTCTGCTAACAATGTGAGACTACTCTTATTTG
GGTTGCCGCACATTCACACCGCACATTCACAAACTTTAAATGCGAATTGTCGAATCTATA
CAATCCATACACATCGATCATATGATACAAATCATTTCAATTCAACGGTTCAAAAGAAAA
CGATGAAGCAAAACAAATCATAGTTCCAAAATTTGTACATGCCAAAATAAGATTAAAGTG
TGAGTGTGAAGATCACTCGTTGACTGGCGGAACCACTCATCGGACGCCATCCATGTCGCA
TGCTCCAAGGCCATCCTTGCGTCCTGATCCGCGTGCATCGTGGCTGCATTCATTGATGCT
ACAATAGACGCCCGCGCCGCCTAGTACTCCCTATGCTCATTGATCTCCTTCATCCTCACA
AGTCACTTCTTTGGATGCTCATACAGGAGGCTTTCGTTCACCAGCATTATCTTCGCATCC
TCCGTGTCCCGTATGATTTTCAACCTCTCATTCTCAAGCTCAACCTTTATAAATGTTTTG
GCTTCTCGAGCTCCCATTTGATCGCCATCTCTTTCTTCTTCAACTCGATCTTGTCCCTCT
CAATTTCTAGCTTCTTCTCCACCCTCTTCTAGTCCCAATTCATCCTCTGTTTTGCGCATC
CAACATGAGCATGTACCTATCATATTTCTTGTTCTTCGTAACCGAAAAATATCCGCCCAT
GTGAAGGACATTTTTGTAGATGCGGCGGCACAGGAGGCCCTTGCCTTCTCCCACTTGTTT
CACATCACATGTCGGTTATCATTTGGCATGGTGGTGCTTCCATTCTCCACTACAACATCT
TGCTGTTCTTTGTCCAACCCAATTGATTGGTGGGAGCTTGAGCCATCATTACTCTTCTTA
CCAGCCTTGAGATCAACCCTAAGTTTTTTCCAATTTGCTTTGCCATTCAATATCACCAAC
AATGGCTAAATTGAAATTGCTTCTTCTCCGTTTCTTGATACATAGTGTCTGCCACCACCG
TCTAGCAAACAAAATATGTATGGGCAGGAGAATGCAACAAAACAAGCATATGCAAATGAC
GACAGGATGAAGTAACTTAGCTTACGCGAGTTACCACTTCCATCCCACTTTGAGGGCACC
CAAGCACTTGTGAATAGTAGCCTACGTCCTTGTTCACTTCCCCTTGAAGGATCCCCATTG
ATGTTGGAACATGCCACACTACGATTGGTGATGATAGGATGCTGCTCCACATATTGCACA
TGTTCATGATATTCCTTCCAAACCTACTCCCGACACTCATTCCTCTTTTGTTGTGTGTCG
CGTATTGGATCTATGGTTGTGGTTGATACGTCTCCAACGTATCTAAAATTTATCAAGTAC
TCATGCCATGTTTGCAATAATTTTTTAGGGTTTCGGTACAGTTTTATTTGATTTTGATGG
ACTAACATATTAACCTAGTGCCCAGTGCGAGTTGTTCTTTTCTGCATGTTTTTGGTTTTC
CAGAAAATCCATACCAAATGAAGTCCAAACGTGACGAAACTTTTTGATGATTTTTTTCTC
GAAGGAAAGAGACCCGGGAAGCTTTGAGAAAGTAGAAGAAGATCCACAGGGTCCCCACAA
GATAACATGGCACACCCTAGGGGGGTCGGTGCGCCCTAATGTCTTGTAGGCGCCCTGTGA
CACCTCTTTGCGTGAATCCAGCGCTGAAAATTCTTATATATTCGGAAACCCTTGAAAGTT
AATCCGAAGCGACCTCAACCGGAGCTCTATTCCGGCACCCTACTGAAATGGGGAAGTCAT
CACCGAAGTCCATCTTGATCATCCTCGCTGCCTCCATGGCGAGGAGGGAGTAGTTCACCA
TCGGGGCTGAGGGTATGTACCAGTAGCTATGTGCTCTCTCTCTCACTCTCTCGTGATCTT
GATATGACACAATCTTGATGTACCATGAGCTTTGTTAATATTGTCGGATCATATGGGGTT
CTTCCCTCTCTATATTTGTTGTGATGAATTAAGTCTCACCCTTTGAGGTGTCATTATTAT
CGAATTGCATATATGATCATTTGAGAACACTAGATATGTGTATTGCATGTGGATACCCGT
GGTGACAATGGGGTATTTTATTGAGTCAATTAATATATGTTTTGGTAATCAACTTGCGGA
TTCCCGCGCCGAGATTGGGGTATTATCGCACACAGTTTGTACATGTTTTCATCCTACTTT
CTCTGACATAAAATTTTGGGCAACTCTTAGAAGTTCTTTGTGTTGGATTTCATGTTATGA
ATCTGAAATTGTTTGATGCATATAAAATAATTAACTCATGAGTACTTGATACATCCCAAA
GATATCTACTTTTACAAACACTTTTGCTCTTGTTTNNNNNNNNNNNNTGCATGATTTGAA
TGAAACCAACCCAAACTGACGTTGTTTTCAGTAGAACTACCATGGTGTTTTTTGTGGAGA
AATAAAAGTTCCCGAAATTGGACGAAAATTGGAGCAAAGAACCACCGGAGGGGGGGTACT
AGTTGCTCACAAGGCAATAGGGCGCGTCCACCCCCTCGGCGTGCCCAGATGCCTTGTGGC
GCCCACACGGCTCCCCTGACCTTAATTCCAAGCCTACAAATTCCTATTCACCGAGAATAA
AAAGGAAAGAAGTTTTCATCATGTTCTACGAGACAGAGCCGCCGCCACCTCCTGTTCTTC
CTCGGGAGGTCTGATCTGGTGTCCAATTGGAGCTCCGAAGAGGGGGATTCGTCGCCGCCA
TCATCACCAACCCTTCTCTATCAACAATTCAATGGTGCCCGCCATCGGGAGTGAGTAATT
GCTTTGTAGGCTTGTTGGACGGTGATTGGATTGGATGAGATTTGTCATGTAAGTAACTTA
TTTTGATAGGTTTTGATCCCTAGTATCCACTATGTTTGGAGATTGATGTTGTTATGACTT
TGCNNNNNTTAATGCTTGTTACTAGGGCCCGAGAGCCATGGTTTCATATCTGAACCTATT
ATGTTTTCACAAATATGAGAGTGTTTTGGATCATATCTTGCAAGTTGTACGCACCTATTA
CGTGGCATGATCCGCATACCCCAAGGTGANNNNNNNNNNNNNNNNTTCCGGTGATTACCA
TAGTTTGAGGCGTTCATGTATTCTCTATGTTTTAATGCTTTGTTCCATTTCTATATTAAA
AGGAGGCCTTAATATCCCTTAGATTTCCTTATGAACCCCGTTGCCACAGGAGGGTAGGAC
AAAAAATGTCATGCAAGTTCTTACTATAAGCACGTATGACTATANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAGCTAGTTCTATGTCGCTCTAGTATGTAACTGTTACATGA
TGAATGACATCTAATACGATTATCTATCACCGATCCAATGCCTACACTTTTCGCATATTG
ATCTTTGTTACGTTACTATTGCTCCTACTGCTGTTATAAGCACTACAAATTTCTATTATT
ACTGTTTGTACTAATATTTTGCTATGCTGCTAAAACTCTTCTATAGAAAGATATTCGAGG
TGTGGTTAAATTGACAAGTCAACTGCTAAGACCAATAAGTATTTTGTGGCTCCCCTTATG
TCAAATCAATAAATCAGGGTCTAATACGACCCATGAAGACTGTTTCGATCCCCTATACTT
GTGGGTAACCAATATTTTGTGTGACATTGGAGTATCTAGGTGACNNNNGAGTTGATTGAT
GTGTATCATATGGTTATATTGCAGTATGGACACTAGGGTTGTTTGTGATACTTATAGGGA
TGGCTCAATAGATTGATCGAAAATATAACTTTGAGGTGGGGAGATAGCTAGAGACTCTCT
TGCTTGTAATGATAGAGATGACCTAAAGAAATTGCTATGTAAGCTCAAAGAAAAATCTAT
GATGGAGAAAATGAAATGTGATCCTAAGTTTTCTACTTCTCCTATATGTGTTGATGTAAA
TATTATGAATTCTTAGTTGATCCTGAATTAATCACTTTGGTAGAATCTGGTCCTTTCCAT
GGTTATGAAAATGAAATTGTTGTGGCACATCTTACGAAATTAAATGATATTGCCACCCTA
TTTTCTCATGAGGAGAAGATCCGTTATTACTATATACTTAAGCCTTTTTATTTTTCACTA
AAGGGTGATGCTAAGAAGTGGTTCTTATTCTTGCTCATGGTTGTGTATGTAGCCCCCAGG
ATATGATATATTACTTCTCTGAAAAATATTTTCCTGCTCATACGAAACAAGCTGCTTTAT
AGGAAATATTTAACTCTGTGTAAATTGAAGAAGAGAATCTCCCTCAAGCTTGGGGGAGGC
TTCTCCACCTACTTAAAGCTTTGCGTGATCATTGATACGTCACCGACGTATCAAAAATTT
ATGAAGTATTCATGCCNNNTTTACCTATGTTTACAATACTTTTATATNNNTTTGATGCAC
TTTATATGATTTAATCTATACCTACTAATAAAGCAAATAGGGTTTCTGGTCGTCCGTCTA
AATAAATACCCTCAAA