morexGenes - Barley RNA-seq Database

Contig contig_58432

Source Contig contig_58432

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_58432 (7140 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_58432

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70727	1	889 bp	MLOC_70727.1	Available	Available	LOC_Os02g21530.1, FRAME:-1, EVALUE:6e-22, 13102.m02413 protein expressed protein
MLOC_70728	8	2036 bp	MLOC_70728.1	Available	Available	LOC_Os03g29340.1, FRAME:-3, EVALUE:0.0, 13103.m03372 protein domain of unknown function domain containing protein, expressed

CDS Structure of MLOC_70727

CDS Structure of MLOC_70728

Contig Sequence (7140 bp)

>contig_58432 7140 assembly3_WGSMorex_rbca.fasta
AGCGTCAAGAAGCTTGCAGGAAGGACATCGAGCGGGCATTTGGTGTGCTTCAATCTCGTT
TTGCTGTTGTCCGGTATCCCGCTCAGACTTGGTCGAAAGATCAAATGTGAAAAGTCATGA
CTTGCTGTGTTGTCTTGTAAAACATGATCATTGAGAGCGAGCAGGAGGACCCAGTGTTTG
ACACTGAACCATATTACATGCAAGGTCCTCTTGCCCAAGTTGATCACCAGCTACCGCCAA
CCTGAACTGCCTTCCTCAACATGCATCAGGAGATCCGAGACCCACAGTGCATCAACAACT
GTAGCAAGATTTGATGGAGCACCTATGGAGGCTGAAGGCAAACGCCTAGCTCAATTTTTG
ATTTGTATTAAGTTGTTAAACTATTTTTGATTTGTATTGATTTCTGTGATGAACTATGTG
ATAAATTTTTTATTGTTATTCAATTTATGCTGAAGAATGCAGAACATGGATCAAAAGTGG
TCCAAATTTGCGTCGAAACTGGGCCGAAAGCGAACGGCTGGGAAGAATTTCAGTCGATCA
ACCTCTGGGGGCGAATGGTTGGAGATGTTCTTATCCATTTCGATAAAAAAAAGGATATTT
TGCATCCAAATCAATCTATTCGATACGATTTGATCTCCAGGCTAATATGGCGATAGCATA
AGTAACTTTAAGGTTTGTGGTTCGTGTAAACTTTTAGGTAGTGTACAATAAACTTTGTCA
CTTGAGAAGCTTGGTGAGTAAAACAATTTTCTATTCTTGTAGGAACAATGAATCATCCAT
TGGTATATCACATATTCACATGAGAAGTGGTAGCTGGTTTACAGCAGAGTATTCAACAGA
GAAGAATTTCCGTCGATCAACCTCTCTGATCAGCCGATTGCAACTAACTAGCTGTAGGAG
GTGCCCTGGCACTGGCAGTCTTCTTCCCCTGGAGAAAAACAGGTCAAAACGCACTACATC
AATCTGAACTCCGTGCTGTTCACAAGCAAGTATATGTTGTCCAGATAGGTTTACTCTGCC
TGCATACCTGGCGCTGGTTCCTTCTGCCCGGGGTGGCGATGTGTACTGGGCGGCCGTGCT
CGTCGTAGAGTAGGAGGCCGCTGAACCGCGGCAGCTCGCACCGCATCCCCATCAGTATCC
TCCTCTGCCACACCGGCCGCCCCGGCGTCATCGCCGCCGACGCCGGCGTCCCGGGCACTA
TCAGCGGCGACGCCGTTGTCGTCTGCGCCGTCGGCAGCGTCCCGTACCGCCCCGGCGCCA
TCGGGGCCCCTCGGCTGATCGCCGTCTTGAGCGTGGACGATGGTGCACCCGGCTCGACCC
CAGCGCTGCTTCTGGCACCCAGCCGAGGAGCCTGAGCGCAGGAGACCATCCTGTCCGGCG
CGTCCGCGCCTTGCTGCCGGCACCTGTCGTCGTGCCTCCCGCTCGCCGCCGCCTTGGCGG
GCGGTTTCTGGGGCTGCGATCGGCCGGAGTCCCGCACCCGGAGCACCAGCGGCTCCGGCC
GGCGGTCGCCCTCGCCTCTGACGACGAACAGCGCCGTCGGGGTGCTGCGCCTCGGCTCCG
GGTGCCGGTTCCTCGCCCTCCGCCGCAGCACCGACGCGCACAGCCCCATGGTGTCTCCGG
CCACTCCGGTAGCTTCGGGTCAGGGGTTTTAGTTAGATTAGATAGACGGGCCGGTGCCTG
ACCATCCGCTTATCCATCTGCATTTGCGTTGGTTGCTTTCTTTAAGGTGGCAAGCAAAGC
AAGCGGGTGGAGTGAGCTCGGCCGGGAAGTAAACGGAGGGAAGGGATCGAAGGAAGGTTT
CGTCGCCGGTGATCTTTTTTAGCGAGTTGCTTTGCCAGCGGAGCAAGCCAAAGCATTGCC
CGTTGCTTGTCTAGGCGAGGGCCTACGCGTGTGGCGTGGTCGGCCGGTGTTTCGCGGGCT
CGCGGCCGCCGGTCGGCCCGCCGCCGTCCTTCCGAGAGTGGCTTTGGTTGCATTCCTTCA
TTTCCTTCCTCGTGCCTTTCTTGCATGTGCCGCCCAAGTTTGGTAGCGTTTTGCATGTAA
GTCGTACGTACGGTGGTCGGCGTTTCCTGGTCTTGTACAACCTCAAACTAGAAACTACCA
CCAAAAAGTCTAAAACACAACCTTGAACTATGATACCCTCTACTCCCTTCATTCCTAAAT
ATAAGTTTTTTTTACAGATTTCATTATAAGACTAACTGAGTGAATCTATACTCTAAAATA
TATCTATATACATTTGTATATAGTCTCTTGATAAAATCTCTAAAAAAGACTTATATTTAA
GAACGGAGGAAGTAGTTTATAGCCCTCGACTTTTAAAACCAGACAAAAATCGACCCTGGG
TGGTTCTTGACTGGTTTTGACCAGTCAATCTCCTAGTCAGCGCCAACTCATGCGCCACGT
CACCATGCTCCTGAATTGAAAATATGCTTGTTTTTTTATCCATTTGGCAAAACTTCTTGA
AATTTTCGCAGATTGAATACAGAGGGGTTTTCTGGTTTTTCGAGACTTTTTTCCTGTTTT
TTCTGAAAACCTTTTTTAAAGGGTTGTGTGAAAACATTCTGGGCACCTAGAAATCATCCA
GAAAACTTTAAATGTTTTCTAACAAACCCACACAACCCTTATCTTCAATTTGGGAAAGTT
TCAATAATTCTGCCAAGTATGAAAAATAGAGAGAAAAAAAATCAAATTTGAGTCATTTTG
GGTCAATTTGGACCGAAAACAAAAACTTTCCAGAAAAATCTAAAACAATTCTGAAAAATT
CTCACAACACTTATATTATATCTGGGAAATTTTCAACGAGATTTTTGAAGTACAAAAACA
CAAGAGAGAAATTCAAATTCAGAGCCAAAACCCTAAAAATTCTCTCTTAATATTCACAAC
CCTTATATTCAATCTGCGAAAGTGTCTAAGAACTTGTGCTCAATGAGTAACAAAATACAA
ACTTATTTCAAATTCAGGAGCATGTTGAATTGGTGTATGAATTGGTGTTGGCTGGGAAGT
TGACTGGTCAAAACCGGTAAAAAACAATCAAAAACCAGCCAAGAGTTGTTTTTTCGTCCG
GTTTTGAAAACTGAGGGTTGTAAACTAGACGGTTCCGCAGTTCAGTGTTGTGTTTTAGAC
TTTAGTGTTAGTTTGAGGTTGTCATATGAACTTCTCTCTTAATATTAAAATCCTTTGGAA
GCTATGGATTATTTTTTGTGGGGCTAAGCTATGGGTTAATTTGATAGAACTACATTACAT
TATCTTGAAAGGAAGTTGAGAGAATATCTATGATCAAAGAAACTTTGGGCAGGGGAAGAA
GCAATGACACCTTTTTGAGCTTGAGTACCAGTGATCCTGTTTTCTCAAAAAAGGAAAAAG
AAAAACAGAAGTCATATTTCAAAGTTACAAAAAAATCTGAAAAAAAATCACGCCTGTTCA
AATGTATGTATACTAAACGCGTATAAATTTTCATGATGAAACATACCGACACGCACGCTA
AAAAAGGGCAAAAATCATGTTTAAAACAGTGAACAGTGTGTGGTCAGCAATTTAATCTTT
TTTGTGCAGCTCACATGCTAATATATCCCATGAAAATTATAAACATATACTAGTATATAT
CCATATGAACATGTAGAATTGTTTTCAAATTTCTTTAAAACTTCTAAATGTGCCTTTTGA
TTTTTTAACAAAAAGATGAGTTTATTGGAGCTCGAGCATACAAATGCCGCACTCCAGGGA
AAGCAGAAACCAAAGAAACATATGAATGGCTTGACACTCGGTTTCGGCAACGTCCCAATG
ACAATGGAGAAGCTACGGTTAAGTCCTTGATAGAAAAGATTTTCAGTTTAAAACTTCATC
ATATCATGGTAAGTGTAGAGATGCACTAGTTTTATTTACAGTTTTCTTTCTGGAAATGCA
CGAGTGTACCATGTTCTTAAGAACCAGTTGCTCTTGCATGCCTTCTATTCTTTCGATTTC
GAGCTCTCCGTAGATCCATCACTATCGTTCTTGTCCTCTACCCTTGTTTCAACTTCCACC
TCCGCATCGACTGCAACAGCTTCACCGTTGTCCACCACATTCTCGGTGACATGCTCCTCC
ACCTCGATGTCGGGTTTCTTCTTGTCCCCTGGTTTCAGCGACACGTGATGAAAGGTCTCC
TGGATCTTCCCAACGCCTTTCTCCACGGGCTCCATCGCCTGCGAGATGGTTAGGGCCACA
TCCTTGACAACCTACGCAAGAAGAAGCAAGTAACCAGTCAGAAAACCCAGATAATTCAGG
CTCTGCAACCTACCGAAATTCTGACACATGTCAAGCACTTTACATGGTGTCCACCACCGA
GGACGACATCCTCGACGCTCTCTCTAATGCTTGTTCCTGGAGTCTTGACATTTGTCTCTT
TCTGCTCCATGGTGGCCGGCACCGCATTGCTGTTGTTATCGACATCCACCTTCACCTCCA
TTTTACTTTCCTCACGGGTCACCTCCCCGTGCTCGCTGTCCTGGACTGGGATGTGCTGGT
ACGGCTCCACGCCGAAGACAAATGCATGTGCGATGGCTGCGATAGCCATCTAAGACAAAG
CAATTTCGCTTTACTGCATAAAAGATTAACATGGCTCTCAATCAACTCAAAAGATTTACC
TATTTACCTCAATACAAATCAGGAAGTCTTGAATCCCATTTTGCACCTTGCCCTCCTTTG
GCACGAGCCCCGTATGGCAGATGATGGTGATTCCGATTCCCTGCCACCAAGTGGCGAATA
CAATGGCCTTAAAACTTATGAACTTGGCTAGCGGCCTTATTGCCTGTAGCCTTTCATGTG
TTGCATTGTAAAATTTCACCAGACAGTACAGTGCCCATGTCTGGCTGAAATTTATGACAA
GAGCGATGTAAGGGTATCTGCGTATTACAACATGACATGCTTTTAGCGAAAACGAATTGA
ACTTCTCTCCCATTTCATAAATTCAGACATCTCACCATTTTAGATATCAAAACGAGAAAG
AAAAAAAATGAGATAGTTACCCATAGTTCCACTTGAATTCACCATCTCCATATGCTCCAA
AAAGCTCCAAGACGAATGCCAGGAAAGCACATAATGTCTTTAGAATCATCTGAAATGGTG
TTGAGGAAGGATATATCATCCACGTCGTCAACTCGTCATTGACCAGTTTCAGGTGAGAAC
ATTCCAAAATGTACTACTTACATATTGCACAAGGCCGAATTTTATAATTGTGTATAAGCT
CTGCCCCAGTGCATTAGGATCGCAAAAGAAGTCACGCAGTCTACTGTGATTACGATATTT
TGCCTTCTCTTGACTCTCAAGCAACTGTTCACTTAGCTCTTCCATTCTTTCCTTTTCAAG
CAGGCCAACAACCTGCCGTTCTCCCCCTAAAAGAGTTAAGATTTCAACTTCCCAAATTCT
TAATACAGTAAGGTATCATGAATTTTGACAACAGGATCAGAGAGGTGATGGAGTTAATTT
TGAATATATTTAATTAGCCAAAATTTGCTCCATAAGACTGTAAACATGTATAAATATGAA
AATAGGACGCAATGTCCATGCAATTTACCGCTGTTAATTATGGAAAATTTAATTCTCACA
TATTATTGGGTCCATTCCTGTGGTCATATAGAAGAAAATAAGATTACCCAGGCATGCAAC
CAAGTATCGTCCAAAGGCATACAAAGCAAATGCTTCATAACAATTCCGCAATATATCACA
GGCCAAGGAGAATTCCGAATGGTACAGCGATATTATCTGGGGAAAAGAAATCAAATATCA
AAAATGGGATAACCATACAGGTCAACATTTCAATAAAAAATGGAACAAAATCTTCAGGCA
GGCAAAAATAAAATGCTCAAAGAAACCATGATAGTACGGTGTTTCTTCTTACAAGTTCAT
GATTCTATTATATAACTGATCGTTTTTAACACTTCCAACATTTTGATATGAAAATGATAG
TAGCTATTTTTCTGAAGCCAGCAATTCCATAGCACATTCAGCATTCCAGCATTCACATTT
TGCTTGCTTTTACACATCTACTGGTTGCTGCATTGTACCCCAACAGTTATTCAACCAATT
CCAACAAGTCTGGGCTCAAACTTACAGATTCAGACGCGTATACAGGCACCATAAAAAGGA
CAGCTATGATCCACTTCTGCTCCTGCAGAACCCTCGTCGAGATAAATTTGTTCAGTCAGG
AGAACAATGCCAAAGTTATAAACATTGACTACGCTGGAGATATTTGGTCCACCAACAGAA
AGAGGGGACACTGCGACATGAACCCGCCACTCACCGCAGGGTTTCTGTACGATCTAAGGT
GCTGCAGTATAAGCCAGAGCGAGATGAGCAGCGCGACGAGCACGAACCCGGCTCCGATGA
GCACCGCGGGTGTGTGGAGGTTCCTGTAGAACCCCTGGAAGCTAGAGGATTCATTCGATG
TCATCAGCTCATCCCACGTTCACTGATCCCTGAAAGAAAATTCAACTTGATCGGACACTC
TGCTCTCAGATAAAGAATTTGTTATCTGAAAAATGCACGAGGAGAGAAACTTATAAACTG
ATTCTGACTGCCCCATTGCTGCCCAGGTTTATGTTATATCTGATTTGCTGAACGAATGGA
TAGGTGGATTTGTGCCAAATTGCAGTGAATCAGTCATCAACAGGCATGTATGTATAACGA
TATGATATGAGGTTTCGGTCCAGAAGAAATGAGGACTTTTTCACTGTTCTGATCTTAATC
TGAAACTACAGCACAAAATGAACTCTGTACGAAACTATTTCATGATTTGACCCTTTTAGA
AACGTCATAACCCGTGGCGTTGCTGCTGCACGTAGAAACGCCGGCGTTTCTGCTCCACAT
TTACACGCCTAACTAGCTCGCGTTGCAGCCCACATAGAAACGCCAGTGGCTCTGGCGTTG
CTACCCAGGCGGCAAACGCCATGAACCATGGCGTTTTAGTGGTGGACCCCACTTGCTCGG
TGAGAGTGGAACCAGCTGCCTCCCTGCTGTCCGCTAGCGTGTCTCGGGGCTCGGAGAAGA
CAATGGCGACACGAAGGCCCTGTTTGGATACTCTAACTCGGTTAGAGTTTAGAGTTAGAT
TCTAACCCTGGACTAACCCTAAACTAACTCTAACCAAAGAGGTGTTTGGATGGAAGGGTT