Map Locations of contig_58412 (10893 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_58412

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70708 3 2030 bp MLOC_70708.1 Available Available LOC_Os06g46570.1, FRAME:+3, EVALUE:0.0, 13106.m04921 protein galactosyltransferase, putative, expressed
MLOC_70709 1 2194 bp MLOC_70709.1 Available Available LOC_Os06g46560.1, FRAME:-1, EVALUE:1e-54, 13106.m04920 protein myb-like DNA-binding domain containing protein, expressed





CDS Structure of MLOC_70708






CDS Structure of MLOC_70709






Contig Sequence (10893 bp)

>contig_58412 10893 assembly3_WGSMorex_rbca.fasta
ACCGTCGTGAGGTGATGACGACGGTGGGGAAGGAGAGAGATGCGGTAGCGGCGCGGGGGA
CTTCCCATCGCTTCAGTGCATCCCTCTAGATCGGATTAGGGTTTGAGACTGGGAACCAGT
GGTGGCGGCGAAGCTCGTAACCCGTGCCATGGTCCCCACCTCCTCTATATATAGCACTGC
GCGACAGGGGCCCACCAACCTTATTTGGGTTGGACGCCTGAATCAAGGTCCAATGGGCCG
TTGGGCCCATTGGGGAAGAGATCAACCTAACAATTCTGTGTCTACGTGTGTTTTTGACAG
GAAGGTGATCACGGGGCGAAACGCTTCTTATAGCATCATTAGCATCATCCAACAAGACGA
CTCACTGGATACAAAAAGAAAAGAAGGCATCTCCTGCTCCCACATGCATAAACAAACACC
ATCGATCCCCTATGTCTTTAATTTCCCATTTTTCTTTTGCCAATTAAGCGTTCCAGTTAA
GCTCGTCGGCTGACAGTGGCAACGATGACATGAGCTGCTGCATCTCGAGGCCGAACTCGT
CGTCCGTGGTGACGACAGACGACGGACCTGGCGACCCGACGTTGGCTCCGAACCACTCAC
CCGATATAGCCACACCAAACATACCGGAGGTCCCGTTCTCCGTCGCCCTCCTCATTGTCG
GCTTGGCATCATCTGCATCAGGTCAATTGTGGTACTTGTTCCGTGGATTAACTCCTGTCT
TTATATATGAATGAATTCAAACAAGAGTAGCGGGATGAATGGATGCATGCACTGACCGAT
GAGGAAGTCCCATTTCCCGCCATGGTGCGGGTCCTGGCCGCCGGGAGGGAACTGCGAGGT
GACGTCGCTGTCGCTCACGCTCGGGACGCCGCCGTACATGAGATCGGGCATGGAGCCCGC
CTTGCACACGGCATGGTTGGGAGTCGGACGAGGCGGTTGATGTTCGTCGACGCCGAGCAG
CAGCGCCTCCAGCAGGCCGTCGTCGCCGCAGCAGCTCGCCGTCTCGATTTGGTTCGAAGG
GAGCGCGCGCGGCCTGGTCGGCAACGGCGGGAGCCCCGCCGCCCTGATGCCGCCGTGGTG
GTGATGGAACGCCGGCTGCGGGTGCGCGTGATGAGTGGCGTGGTGGCGCACCTGCATGCC
CTGCATCTGGTTGAGGAGCGGGTAGTGTTGGTTGATCAGCGGCGAGGAGTGAGGGTGAGA
GGCCGATTTGATGCACGGCGGCGGCCTGGGCGGCAGCGCGAACGGGTCCGAGAACGGCGG
CGCCAGGGCGTTGCCGTCCGCGTCGGCGAACGGGTTGACGTTGTGGGCGCGCATGAGGGC
GATCTCCCGCTCAACGTCCGGCGGGTAGAGCGACTGGCCGGCGCGCTGCCGGCGCTTGAA
GCGCGTGTTCCAGTAGTTCTTGACCTCGTTGTCCGTCCTCCCGGGCAGCTTCATCCATCA
CACACCGCCATGCAACGTTTTGTCACTCGTCATCGATGGATGATCATATATACAACAGAA
AATCCAAGGAAGAAGAAGAGGTTACGTACCTGTGATGAGATGCGCGCCCACTTGTTGCCG
ATGAGGCCGTGGAGGCGGAGGATGAGGCGCTCCTCCTCGGGGGAGAAGGGGCCCTTACGG
AGGTTGGGGCGGAGGTGGTTGGCCCACCGGAGCCGGCAGCTCTTGCCGCAGCGTTGCAGC
CCGGTCTCCCGGCGCACGGCGTTCCAGTTGCCCTCGCCGTGGCGCCGCACGTGGTCCAGC
AGCACCCTGTCCTCCGCCTGCGTCCACGGGCCCTTCTTCAGACCGCCGCCGCCTTCTATT
ACCCCGCTCCTCGGCATCGTCGTCTCCATCGCCGTCGCCATCTCAGCCGGTATGTCGTCT
TCGTCTCCCCACACTACCACTCCTCCTTCGTCGCCGCCGCGAAGTGTCGTCGGTGGTCCT
TCTGGTCTTCTCTCCTCCCCTCCCGGACCGGACAAGAGAGAGGGGGGGAGAGAGAACCAC
AGGCGATATCGGTGGTCGGCGCCAGCCTATCTCAGCTCCAGCGCATGGCCCGGCCGGCCA
GCCGGATCAAATCCAAATGGCAGCCGAGGACTGAAACGAACGAATTGGGCGTTGTCGATC
GATCGTCTGCTCCTAATTAATAGACGACGGAGCGACCCGGTGGGAAAGGAAATGAAAATG
ATCAGCTCAGGTTCCCGGCGAGGGGAACGCAGAGAGCTGGAGCGCGCCCTGCCTGCAACC
CGGCCGGCAAGGAGAGGGGGAGGCAAAATGGGAGGGGGCAGGCGGTGGGGATGGCGAGGG
AGACGGGCGACGCATGCAGCTTCCCTCCCTCCCTGATCGCCCCGCCGATCGCTCGCCGCC
GCGCCTATGCGATGTGGCGCGCGCGCCTATTAATGTGCCTCGATTGGCTCATCCGCATGC
ATCCACCTGGGCGCGCGCGCGCGCGCATGGCGATCTATCAAGTTTAGGCATGCTGCTTTG
TTTAGGAGAAGCCAGTGGTGGACTCGTTCTCTCGCCAACAAGAGCTGCATTGGACTGGAA
GCTTGAAATTATTTGTTTATCCTAACAAAATAAAAACACATCCCCTGGGCGGAATGTAGG
GCGAGGAGCATCTCCAACTGCGCGGCGCATAAAAGAAAATAAACGCCAAAATAGCGTTTC
AGACTCGCAAAATTTAGCGCGCCACAATAGCGCTTTAACAAACGTCGTAAAAATACAACG
CACGTGTTTAGGCATAAAAAAACAAATACTGAAATTCAAATAATTCATCGGTAAACATTA
AAAATCAAATACAAACTAACAAGCAAATTCAAATTCGTAAAACATGCTAATAAAATAAAG
TATACCTAGACTCCTCCTCCTCCTCCTCCTCCTCGGTGTTGTAGTCCGTGGACGACGGAG
TCGCATACTCCCACCCAGAATCGTTCGAGTTTCACGTCGTAACCGAGTTATTTATCTAGG
AAATCGTCAATGTCTTGCGACGACGCCTGTCCTCGCAACGCCGGATCATTCAAATCCTCT
AGTGACACTATTTTTCATGTAATCCCGGGTCGTATTTGGAAGGCACTCTCTTTTGATTAT
CCTTGATCAATAAAGTGCGGTATCTCTAGAAGAAAAAAATAGCTCGCACACACACGTGAA
AAACAGAACATATTCTCAATGACCAATAGAGAGGTTGTAAAAAAAAAAAAAACATCGGGT
GAAGGCTGCAGAACCCGACGCTAGGCTCGTACTGTATGTGGTACACCGTGTGGCGGGCCG
GGCGGCACGCGAATCAACCACCGCTCCGGCAGGCTTCCTGCTGCACCGTCTTGTACTCCA
CTGCATCCACCTGCCGCAACACGCGCCGAGCAAATCCAAATCCAACCAACAGCAACCGCA
ACTGCGGCCATTACTTTACGGCCAGTTACCACCAATCACCAATCAGCAATCAGCAGCACG
TACTTTATCAAATTAAATTCACCGCAAACTTGCGTCGAATTCGCGGCGTCCAGCTCCGCT
CAACTGTGCTGTCGGTCGCCGCCTCCGCCTCCGCCCGCGCGCGCACATGGATGGCGACGG
GGGGAGGGGAGGTGGAGGACGACTCGGGGATTTAAGTAAGCGAGAAAGAGAGAATACCCG
GGGAGCCACGCTTCCTCCTCCTCCTCCTCCTCCCCATCCCACGCGGTCCGCCGCCGTACA
CCGGCACATGTCCTGCACTCCTGCCGCGGCAGCTGAGTAGCTTATTATAGCTGCCTGGGA
CTGGGGGTGGGGGGAGGCCGGCGGCCATGGGCTGGAGGAGAGGGGACGGGGCAGTGGCCA
GGCGGTGGGTGCTCCTGCTCTGCGCCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCTCCG
GGTATGTATGTACTATGCCACTTGTAGCCCAGCACCATTGCTCGCTCCGAGTTCAAGTTC
AGCGCGCCTGCCTACAGATTCCGTGCCTGCTCCTTCAGTTCCCGCGGAATTCCGAGGGGC
GTCGGCCTGGGACGGGGCTCGGGGTCAAGATCTGCCGCGCTCCTGCTTGCATTTTGCGGG
CAGAGTTAGGTCAATGGGCTGTGCTCGGTCCAATCCAACTCCAGCGTCCAGCTAGCCATC
CCCTTCGGAGAGCTTCCCGACTTCGTCGGCTCTTCTTAATCCGTCTGGCGTGCTCTGGTC
TGGTGTTCCGAGCTTTCGATTGCGGTGTCCAGCGATTCAAGAAATTCACACCTCTGCGCG
CTCGATTCCTCATTTTCTTGCTCTGTTTGAGCTCCAAAATCCGTGACCGAATCGGTTGCA
TGACCTCTGAGTCGACTTTACTGCTACTGTACTGCAGTATTGATTTACTTATGGGCTGTA
TAATTCGTCTGTGCGCTAGTTGATAAGGATTCTTCCCAGGATGTGGACGCTGCCCGAGGC
AACCGAGGTTGCCAAGCCGAACGAAAGAAGAGGGAAAGAGGCCGAGCTAATCGCCCAAGA
CTGTAATTCTGCAAAGGTACCTCAATCTCTCTCCCGAATGGGACTATCTCCTCTCTGACT
ACAGTATCTTGCAGCAGCGGAATGCTGATGTTGATGCAAATCTCAGGTCGGGCAGAAGCA
GGATTTCAGAGATACGCTACAGGCCTTGGACACTCACAACGCTGTACAGTACGTGAAGAC
TTGTGCCCCTATGGTCTGTTCCAGCAAAGCATCAAGGTGGATTTTTATCTGACTTGCGTT
CAAATGGCTCCTCCTCCTGCAGGACACTGGACAAGACGATAGCAAATTTGGAGACGGAGC
TTTCGGCTGCGAGGACACTGCAGGAGTCATTCCTCAACGGCTCCCCGGTTTCGCAGGAGT
ACAAGGCCTCCGAGTCGTCCGGAAGGCGCAAGTACCTCATGGTCATCGGCATCAACACGG
CTTTCAGCAGCCGTAAGAGGAGGGATTCCATCCGGAATACCTGGATGCCACAAGGTTTTT
TTTTTCTCCCACATGGAATTGTTCTTCCTTCTGTTCTTGAAGCATTTTTGTGGCATGAGT
TATTCATGGTGGAGTGACCGCGGAAAACAGGAGAGAAGAGGAAAAAACTGGAAGAAGAGA
AGGGCATCGTAATTCGTTTTGTCATTGGTCACAGGTGTGCAACATGATTATTTTTCAACC
TCGGCTTGTCTCACATTTTTCAGTCCAATTGGTAATGATGAATGGTTATTTGGCATATTT
GCAGTGCTATTTCAGGTGGAATTGTGGATAGAGCAATCGCGGCAGAGGATAGAAAACATG
GAGACTTCATGAGACTTGTAAGCTTGAATTTATCTGCTTTAATAACAGTTATTAGCCGTC
CCTAAAAGAAAGTTGTTAGCCACACCCATGGGAATTGCCAATGTAATTGTTACTTTGACT
TTGGGTTACATTATGAGTTGTTCTTACTTCCAATTGTCTTCACTCTGTACAGGATCATGT
CGAAGGATACCTTGAATTATCTGGAAAAACCAAGACATACTTTGCGACGGCTGTTGCTTT
ATGGGATGCTAACTTCTATGTCAAAGTTGATGATGATGTCCATGTAAATATAGGTAACTT
CTTCAAATATTAATTGACCGTATGAGCTGGATAAAATAATCATCACTGTATGATCACAAT
CTTTAGTTCTAACTGCTAAAGCACATCTGCGTCTTTTATACCTAAATGTGTTGATAAGAT
GCTAAGTAGGTACCTACAGGCTAAGGTTGCTATGAACTTTAACTCTGATGCCATCTAGTC
TGCTTATTTCGTCAGAAACTAGGAACTGAGAGCTTGTGTGTCAAAACGTCTTGTTCAGCT
AGTGACAACCATTCTGTTTCTAACATCTAAAACTTCCACATCTGCAGCCACCCTTGGGCA
GATTTTGTCCAAACATATTTCAAGGCCCAGGGTATATACTGGATGCATGAAGTCTGGTCC
CGTCTTATCTGACAAGTAAGTAGTGCACTCTATTTAGATCCTCATTTCTTTGTCATGTTT
CCTAGTTGTTGCTAATATACAACTGCAATGGAACAGGGATGTCAGGTATTATGAACCTGA
GCACTGGAAATTCGGGGATAAGTATTTCCGACATGCCACCGGTCAGCTATATGCTATTTC
GAAGGATTTGGCAACCTACATCTCCCTAAATAAGTGAGATATTACCCGAACCAGTTTTTG
TTTCAAAGGACCAAATTTACTCTTCATGTTTTGGAGCATGTACTCACCGTTTTGGATGAT
TTGATCTTTGCCAGGCATGTGTTGCACAAGTATGTCAACGAGGATGTCTCTTTGGGGGCT
TGGTTCATAGGGTTAGATGTTGAACACATTGATGACCGTCGACTTTGCTGCGGTACCCCA
CCTGGTAAGCATCTCTTTAACACTTATCTGAATGGGTTCTGATTTGAGTGCCTGAATTAG
TCGGATTCAGACTATTTATTGATAAAAATAACAAATAACAACCTACAATGTGTTAGTGAC
AGGCTTTACACAGAAATTAGGTTTGAATCATGTGTCTGTTACTGACCGCAGATTGCGAGT
GGAAGGCCCAGGCGGGGAACACCTGCGCGGCCTCATTCGACTGGAGATGCAGCGGCATAT
GCAACACCGTGGAGAACATCCAGGGAGTGCACAACAAATGTGGGGAGAGCGAAAAGGCGC
TCTGGACCGCTTCGTTCTAAGCGAAATCCGGATGAAGTTCAGACTGACGAAGTTGCTCTG
CTGTAGTATAGTAGTCCTAATTGTGTAGTACATTGTGCATGAAACGTGTTCAGTTCATTC
TTGGGCCTGTAGGTAGGTTCTGTCGGGCGATGCCAGCGAAGCGGACCGTGGTTTTACTCG
GAGTCTGCTGGTTGCCGGCTGAGGGGGGCAAGTATATGGGATGCTCGATCTGTTGGGGTG
TTTTTTGGGTGGTCATTTTGTAAGGATCTCATGTACTCTGTTCATGGTTAACAAGATATA
TAAAGCTCTTCTTCGTTCTTCATGCTAGCGCATTTTGATGGACTGTTGAATGGGCAGTGC
ATTTTGATTTATTTCTATACTTGGTTTTGGGTTTTGAGCTGCTTTGATTGAATGTTTTTT
CACAGAAACTTGATGGTAGGACTTTATAGTACATATGTTGAATCGTTGGAAGTATGTTGT
ATAAATTAATCCAGCAACTTAATGATTTTCATGTATATGTTGGATATTTTGGATGGATAT
ATGCAACTACATTATTAATACTTTTTTTTCAAAGCCTCAGCCGGCAATGGAAGTATGTTG
TATAAATTTTCATGCTATTATTGCACTAACTTGTTACCCATACTAACTAAAATACCCATA
TTACCAAAAGAGGTAATATCACCACTAGTGCTTAAACTTGACACCGGTGTTCACTTTAGT
GCCTGAACTTGAAAAATGCATCAACCTGGTTCTAGAACTTGACACAAGGGTGCATATACG
GTTATAATCTTATCCATAGACGTATAATGCGCTAATGTGGTACTATATTTTGACCAACAT
ACACAAGTGGCATGACAATGGGCCCACATATGTCAACACAAAGGAAAACTAAACAATAAA
AATTGCAGCCTTTCGGCCTCGAAAAATAAACAAAATTAGCTAGCAACTCTGCCTCCAAAT
TTTCTCATACTCGACAGTGATAAAGGTTCTTAATGTTCATCGAGGAAGACGTGTTAGTTT
TATTAGAAACTTGTAAAAACTTTGCCAACTATGATCACAGTAATAAAAATAAATTTTAAA
TATTTGTGTATCATTATAATTATTGAACATTATGATTACTATTTTATATGTCAAAATAAA
GGCTCTTAATGTTCGTCGAGGAAGGTTGTATGATTTGTGTAAAAATAGTACATTAATACT
ATTTAAAATTACTTGAATATTATGCTAAAAAATATTTTATATGTATAACATCTATAACAC
ACCAGTATTTCAACTTTATATTTATTACTATCATTATAATTTACATAATTTTTGCAAACT
TATGAAAAAACTAACATTGACCACACTAATTCGAACCCATTGAAACCACTGGAGGCTAGT
TCAAATTATTTGTACAACAAATTTTAACTGGGTTTTTCCTTTGTGCTGACATGTAGGTCC
GTTGGTCATATAGACATATATATATAAAGCAATCTCTTTTGTTAGAAGCGCCTCTCACAC
CATGTGTGCATGCTATTCAAAATGTTGTGTCAGTCAGTGCATCATACGTCATATAGATAG
GATTACCACTGTATTTGAACGCCTGTGCCAAGTTCTAGAACCAGTTCGATGTATTTTTTA
AGTTTAGGCACCAAAATAAACATGAGTGACAAGTTTAAGCACCACCGATGATATTACCTC
TTACCAAAAATACCCATAATATCCGAGTTATTCATATCAAAAGTTGATGTATGCTCTGAA
TATTTTGGTATTTTAGGTACCCGAATTATCCGAACCAAACCAAACCGACTCGAACGTCCA
GGCAAATGGCTCGGACATTGACCGATCATAAAATAATGACCCAGACAAACGCTTTAACTC
GCCTCAAACATTCGGACCGGCCGGTAACCCCATATCTGTCTTAAATATGAGTTGGATATA
GGAGGCTCGGGCGCGCCTGGGCGTGTCTGTCATGTCGGACCCAGTCCATGCTGGCCCACT
TGATCCCACATTTATTCGTCCCGATCCCTTTTTAGGATCAAACCTTAGCCACTCCGCTTC
ACCACCCAAGCTCTTGTCCGGCGATTTTCGGTCTTCTTCGGCATGGTGGGCAGTGGATCC
GAGTCCTACACCTCCAGATTCATCGACCATGAACTCATCCCACGCGGCCTAAGGAGGAGA
TGGCCGTTTGGCTTGCACTCCGCCGCTCCTCGAAGGAGGCCACCCGACAATAGCGCTCGG
ACTTCTTCCGTGAGGAATTCATTGTGTCCACACAAATGACGCATGGATCCGGCCGTAGGG
GTGCCATCGTTGCCTCACGAGAGGAGGTGCGGTCCGTCGGGCGTCCGAACGCGGTGATGA
GCGCACAACCTCTTCGTTGGCGCGCTGGGCTGGAGGACGCCCCCAACGCAAACATGACGA
CGCCATAGCAAAAATATTTCCGCATGGAGTGTGATGTCCTACCGAACAACATAAACCTCT
CGCCACACATCAGCCCCGTGCATCCCACTTTATTCCGTGATGGCTGCAAGCCAACGTGGA
CGGGGTGAAGACAAGGGTCGTCAAGGGTCAAATCATCTCGTTTACCGATGGTAGAAGATG
GATGCACGGGGTCAGCCTGACACTTGGCATGAGGAGGGTGCAGGTGCAGGAGGTAGTGAC
GGGCGTCGAAACTTGGCCGTTACCTCAACCCGAGAAGACCGCGTCACTATGTTATGGCAA
GTGACCTAGAGCCACTTGCTTAAGTGCACAATTAATGATACACAGGAGATTCCCCAAGGA
TATGCCGACACCGGAGACATAGTGTGGATAATCCTCATTCAGGGGAGAAGAATATACGTG
ACAGTTGCGGACCATCCATAGACAAACCACCGATGCCTCTTGTCATCCCCAAATAGAGGC
TATCACACTCTATGTTAGGGACCCTCTCAATTGATCTTCAAATTCTACACACCCATGTGG
TAGATAAATCAAAAAAAGGGTCAACATGGATACACGGCCAAGGTGATAGAAGGTTATGGT
TTTGTCCATGAGTCTCCGACATATAGAATAGATATGGCCTTTAATGAGGTCATCCATGCA
AATATCTTATTTTTTCAATGCAGTCTCCCCAAAGTTAATGAGGCTGTGGGTACTTCCTAG
AGCTACAATCCCCTATTCCCGCATGGTAACATGTCCTTACCTCATCCTTTTTACATGCAT
TGCCACAACCTGGAAAACCACAGAAGGCCAACAGGTCATCTCGGACTACCTGTTCCCGTT
CTTTATAGTCAATCATCCACATGTGTACACCTTTCTAGTGCCATACTACGACAAGTAAGT
CGCCAACGTTCACTAATATACTTTTAAACATATAAATGGCATTGTGGTTTGTTCTCATTA
ATGCTAATTTCTTCAAATTTTTGCGCAAGACCGACATTGGATCGTTATCGCACTATTGCG
GATGCAGCGCTTGGCTTACTTCTTCGATTCAAAGAGACGCCCTAAAAAAGAATGGACCAT
GTTGAAGAAGGTTCTAAATTATGCTTTCGCCAAGTGTAAGAACTTGAGATAGACTATAAC
AAAACATTCAGAATGCAAATTCTTCACTAGCGCTTGTTGCTATCAAGAACAAAATGTGGA
AACTCTCATTGGCCTGGATACTTTGCCATGGATATCATGGACGGCTTTATGAAGAAAAGC
AAATATTTGTATAAACATAGCCAGATCATCAAGTGGTCCGAAGAGATGGAGAGGGACATG
GACATAAGGGAACTATTAACAGAGCATAGCTGCCTCCAAAAGGTGTTGGCCAGAATCATC
AACAAAGAGGTTGTAAATGAGGATGGGAAGTTTCACTTCCAGCTCGAACGAGATGAAGAA
CGACTTCACCGAGTCGAAGACATATTGTTGTAACCGATTGCGAGCGATACAATGCTTCAA
AACATCTTGATTCATTGTTCATTTCATAAGTTGAGAATTTTACACATTTATTTGTTGCCC
TACATTCTTATACTATATGTTCAATTCATTAATAATCTTAATTATTGTAACATAGTTGTA
ATATGATTGTTTAAATGCAATGGGATGATTGAGTACAAACTACTACTTCAGCGCCATTAC
AATGCTACCACGACAGCAAAAAGAATGTTGTCGCGGCAGCAATTTGTCTCTATGCCCACA
CCACTACTAGTGGCGGGCGGGAAAGGTGTCTGCCACTGGTAATACACACAACTGTGGCAT
ACAGAGAATATGGTTGTGGCGGGCGATAACTTCTGCCCGTGACTACGGTGATGTTATTAG
TGGCGGACGGCAGCCCGCCACTGATGCCATAAT