morexGenes - Barley RNA-seq Database

Contig contig_58335
Source Contig contig_58335
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_58335 (7452 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_58335

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70671	1	1020 bp	None	Available	Available	LOC_Os08g43040.2, FRAME:+3, EVALUE:3e-112, 13108.m04658 protein transferase family protein, putative, expressed
MLOC_70672	1	971 bp	AK249816.1	Available	Available	None
CDS Structure of MLOC_70671

CDS Structure of MLOC_70672

Contig Sequence (7452 bp)

>contig_58335 7452 assembly3_WGSMorex_rbca.fasta
ACCTCCAGCTCGCTGCAGAGCCGCCCGCTCGAAGCCAAGCCGGTCCAGCGTGCCTGAGAC
CCCACCGTCATCAGATCCGCGTGGAGGCTTTGCCCGAAGGACGCAAACGGTCGGCGGCGA
GGGGAGGAGGAGAATCGGGGAGGGGCGGACGCGATATGCACCGGAGTGACAGCTGCCCAG
GGGCTTTTTCCAAAAAAATAAAACGTTTTTTCCACTTAATGAAGGACCGCGGGTTGATTT
CGAACAAATAGAGGGACTTTTTTGCAAAAACGCCATAACGGACGACCAGAAACTCTATTT
GCTTTATTATTAGGGAGAGATTATGAGATAGATATTAATATTCTTATTAGTTAATCCTAA
AAAAAAACTTATTAGTTCGTACAAATACGCCCGTGTGACCTCGCTAGTTTGTCACATTGC
AATCATTACTTGTGCATCCAGCCCCTCGCACGGGAGAGGACTGATGACGATCAAGTTCAC
ACTCCTCAGCGTCAGTTACCCGGGATCAATTAAAGCCGTATAATCACTCTGCCAGTATGA
TTCGAAGCAAAGTTTCATAGATTATTATTCGTCCGCACATCATAAGCACTTTCCACATCT
TTGAGCTCGATCGAGCTGCAGCTCTTATTTAGTTATATCTACCCCATGGCGTACTTGTGC
GTCCAGCCCCTGGCCGTGGACTCGTACCTGGTCCGGTCGGCCTTGCACATGTGCGCGATC
TCCGGCACCAGCGGGTCGTCCGGGTTCGGGTCCGTCAGCAGCGAGCATATCGACAGCAGA
ACCTGCATCCACCAATAGGTTTATGAATATCATCACCATCATCGTCGTCGACATCGTGGT
AGTTGGAGTAGTAGATAGACAAGATGATCACTAGAGCAGAAGTACCTTGGAGATGGTGAG
GGCGGGGCTCCACTGGTCCTTGAGGATGTCGAGGCAGATGTTGCCGTTGCTGTTGATGTT
GGGGTGGAAAACCTTGGTCTTGAAGGCCACCTTGGGTGGCTTGAACGGGTAGTCCGGCGG
GAAGTGGATGGTCACCAGGAACACGCCGCCCGAGTAGGGGCTGTCGCTCGGCCCCATGAT
CGTCGCCTGCCAGTGGAACATGTCGTTCGACGACACCGGCCCTGCATACAAGAACGATGA
CGATGATGACGGTGGTGATGGCTATGAAGATGATGAACTTATATTGCTTGGAGATCAGAT
GATCACCTGCGCTACAGGAGGTCGGGGGGTCCCTCTGCAGGTCCTTGAGCTCCTTGACGA
TCCTCCTCAAGGCCATTTCCCCTAGGAATCAGCAAAAAATCCGGGAAAGAGGCTGATTTC
TTAACCTGTTGTTCTTGGGTGAGATGGAAGGAACTTGTACCCTAACCTCAAGGTGATCTT
ACGCTACTTCTTCTTTTGTTCTCGATGGCACGGTCTACCAATGATCAGCCGGGGGGGCTA
TATATACACACAGACACACACGCAACACGCGTGCACGCGCGCGCGTACGCACTTACGCAA
CTAGAAAGAGGTGAAGGGCATTGGATCCTTGAGCAGGACGCAGAAAAGGAAATGTAGCAT
GATTCCCTTCAAATATGCCACTCTAGTATCCCCTGGAAACAATATATGCTACTCTAGTGC
AATAAATGTTTATATTATTTTCTGCAGGAACATATCGCACCCAATATATATTCCCCTGAA
AGTTCCATCCAGTGGTAGCCAAGTAGAATTTCCATAAAGGGGCAATGATTCCGACCGAAA
GGGAAATGGGCGCACAAGTGGAAGAAGTGCCAAACTTTTATTGCTTCTGATGGCCCTTGT
TCATGGAGCTTGAGCCCTCCATGTCCATTTCAAACGCTTGGACAGAAAGGAAAGGTTTTG
CTCCACACAGAAAACTCGCGGCGGAGGAAAGGCGGCGACCAAACTTTCTAGAAAGCACCG
AGGTGTATTCCTTTTTGTGCACCAGCTAGAGAGAGGAATGGAGGATGCCCACGGCCGTGA
TCTTAACGCTGAATGGCAAAGCAAAAGATGGAAATGCATGAAACATAAACTGAAGGAGAA
CTACGCGTGGGTATGTCACTGTCGAACGAAGAGATATTATTCGGGCTTATCACTGGAAGA
ATCATGTGCTGTTCAAGGCCAAACCATATGTTAGCGCTCGCTGGTTCTTGCGTGTGTACT
GCTGCAAGGACTGCAGAACATTTTTCTCATGGGCCCTCGCTAGATGCTCACGCGTCAAAA
CATGCGCCGTTTTGTATTACAAGAAAAAGATCAAATAATAGCCTAAAACTACATGATCGC
CGCCGGTGGCGCCGTCTGAGGGCGCGCAAGAAAGAAGGATGACAGTTCACAATTGTTCCT
GGGAGAAAATGATTAAATAAAAACAGTTTTCCTCGATCAGTTCGGAAGTTGACATCTACT
GGTTTCAGAGACTGAATAATTGTTGCAATACTTTCAACTGCTTCAGTAAACACAGTATAT
ACTACATAAATGGCAGGGTCAGATGCTTACAAGCTCACTGTCATACAGATAAAATTACTT
AGTAGTCTATGTTTGTGTCAATACGATGCATTTCTTTTATTTTCTGTTTAATTTGATTTT
TGTGACTTCAGTTCCTGACAACCTATATGTCCATACTGATACTGGGCTACTTTGCCTACA
GTATTTCTAAGAAATAATAATAATAACAATAGAGTAGCAAATTCATAACCCACTGAAAAG
TGGACTTCTTTGAGGGTCACTCAAGGTGAATCTTCTTTTCTATGAACGCGGTTAAGCTAA
ATCTGACCTAGCAGAAATCGAATTCTTGTTGCACCAAGTTAATGAGAGATTCTGTCCGTG
AGATGTGCAATCAAAAAACACATAATGAGACCTTGTGTGATGTGTGGTCAAACCTGGGCA
GATGGCTCGGCCCGACCCGGTACAACCGGTCTTGGGCTATACGGGCCAGGCACGGCCCAC
CAAGACACACCGGCTTTAGGGGCCGTGTCGGGCCGACACGTGTGCCTAGCTGCCCAGCCC
AGGAACTGTCCCCTTGGTGAACGGGTCGATCTGGCGGCATGCTAAGCTTGTTGTCTCACG
GAGGATTCAGCTTATTGGATAGTTTTGATCTTGTATTCAGTCTATTAGGTTGTATAAATA
TTAATAATAAAACTAAACGTGCCTTGTCGTGCCCACACTCGACCCAGCGTCATGGCTAAG
GCGTTGTCCTAGGCGGACCACGACACAGCCCAATTAAAAACATGTCGGATCAGGCACACC
ACAGTCCGAGCATGCGGGCTATCATGTCAGCACGCTAAGACCGACCCATCTGACACATTT
GTGCGTGCGTGGCCACCAATGGTACAAGTGTGGGGAGCGTGAGGTTGCCGGCACAAGAGA
TAGTGGCAGTGTTTAGAGGGATGGATGGCGTGGTCACCAACAAAGTTGGTGACTTGAGCA
GGGGCGACATGCGACATCACTAGCCGGTTGTAGGATAGTGTTGGCAAGTGGTTAGGAAGG
GAGAGGTGGGCGGATCGACAAGGTGGACGAAGAAAAAAATGCAGCAGTGGGAGGAAGTAG
AAGCAGAAGTAGCAGAGGGTAGTTGTCGCTCGCGGAGAAGGGGCAAGGGTTTAACGGATT
TGAGAGCGGGATAGGGTTGGCCTCGGGCAATGGAGATGATAAAAAGAATTCAGAGGAATG
GCTAACGCAGCATACCGTAGCATTTCATATGCGCAATTTATCTCAAGCAATCATAGAAAC
AGTGGAAATGGGTCAGACTATGTTAGAAATATCTCTAACTCAATCATAGGAACGGAGGAA
ATGGGTGAGACTATGTTAGAAAAATATAGGTCACTTCCATCATCTATGTATTCTCTGCAT
TGTGGACGTAGGAACGTAGATTGTGTGGATTGTGGCCCGTACCAACGCACCGATAGTCAA
CTATAACACGTCGGACATAGGACCTCCTCCAGCAATAATCCTATGCCTACGTAAGGTTCT
TACGTTGACTTACTTACCCTTCCCTAAATACTCATCTCTCCCCTTGATTTCAACCTGAAT
GGGTTTCAGTCATTAATTCTAATCCAATTAACTACCTCTAAATCAGCCTTTACGTAGAAA
CCTCAAGTAACATTATTATGTTACTTTTCAAAAAAAAAAGTAACATTATTATGTGGGTGC
AGCATTTCCCCTCCCCCAGTGGCACTTTCGTTTTCTTTTTTTGTTTTAAGCAAATGGTGG
CATCTTCGTAAATAGAGAGATTAGAGAGACAGAGGCCGTTTTTGAAATGGGCCACACCAT
TTGACATTTGAAGATGCCAAATGGTGGCATCTTCTCTTGTGACTGCACGCAGCTAGCACG
CCAAGGCAAACAGCGAGTCAACGATCGACCGACGCACTCGGCCACTCTCGCAGACGCACG
CAGCAAACAACGAACCCTAGCGCGGCGGCGGCGGCGGCCAGGAGCAGGCGGAGCGTCCGT
TGACAGGACGGAGGCTGTGGCGTCGAGCAAGCGTGAGGCGCGGCTGGGCGCTGCCGAGAC
AGAGGTGCGGCGAGCGGCAGACGGCGCGGTATATTTTCTGAAATTTAGTACTACTCCGCA
GCAATCAGTAGCATTTTTTGATAGCATTTTTGGAGCAGCGTTTCCTGAACGGAGTAGCAT
TCTTAGATGGCTTGTGATCTGCAGCAATCAGTATTGATTTAGCGACAAAAGACTTTGACA
TCTTGGAATGGAATCAATGCAACGTAGCGACAATCTAATGGTGTGATTGCAGATTTGGAA
AGATATTTTCAAGTACTTGGTAGTGGCAGTACATCCAAATTTTCCTACATGTAACTGAAA
GCTTGATTATCGGTATGTTTTAGGTTGTTTTTCTATTTAGGATCACATTAGAATGGTAGT
GTGCGTTGTTAGTGTGTATTGACTTTTCTGGTTTTGCATCAAAAAAGGTTCTTTGCTTAA
GACCTTGCCTCATCTTAATTATTTTTTTCGTCCAACGCCACTGCAGGGGAGGGAGAGAGC
AAGAAGAAGAAACAGCTAGAATGGCCAGTGAGGAGGAGGTGCAGGTGGTAGAGTCCTGCT
TGGTAACGCCGTCTGCAGACACGCCGAGAAATGCGCTCCAACTCTCGCAAATCGACCTCA
TGCTAGCCAACGTAGGCTACACTCCACTCCTCCACTTCTACCGCCAACGACACGCCGCCA
CCGACGACTTCTTTGATGTGACCAGGTTAAAGACGGCGTTGGGCAAGACGCTTGTGGCCT
TCTACCCCATGGCCGGCCGCTTCAGGGTGGCCGCCGATGGCAGGTTGGAGATCGACTGCA
ACGGTAAGGGCATGCTCTTCCTTGTGGCTCACTCGTGTCTCACCGTCGACGACTTTAGCG
ACTTCAAGCCATCACCTAAGCTAAGGAGGTTGTTTGTTCCCCATGTCGACGACTCAGCCA
ACCTCTTGTGTGCCACCCAGGTCCGTCTGATTGTCAACTACTAGTCCTTTCTTCCTAACC
AAATCATCAGTAATAGTACATAGCACCATACAGTTAATAGTACAAACATATACAGATATA
CTAGCAGCAAGCAATTAGTAAATTAATCCATATATGCATGTAGGTGACATTCTTCAAGTG
CGGCGGGGTGGCCTTAGGGACAGTAACGCACCATGCCGCTATGGATGGCACAGCCGCGTT
CCACTTCTTCCAGACATGGTCAGCTTTCTCCAGGGATGGCGACCGGGCTGTGGTGAACCA
CCCCTGCCATGACCGCACCCTCTTGTGTGCACGCGACCCACCCGTTGTTCATCCCGATGC
ACTCTCCATTTTCTTTCCCAAGATAAACCTATCAATGCCATCGGGGGTCAACGAGGTTGA
GATTTTCACCCTTAGCAAAGCACAACTCTACACTCTCAAGAGCATCTGCGGTGGCCGTGG
CGTGAGCACCTTCAGTGCCGTGAGCGCGCACATGGGGCAGTGCATGTGTTTAGCCCGGCG
GCTACCCGCGGACTCTACCACGCGCATCGTGTTCCCAGCCAACTTCCGCCGCATCACGGT
GCCGCCACTCCCGAACAGCTACTTTGGCAACGCGATGATAAGGGTAAGTGTCGCCGACGA
GGCACGGCGCATTGCCACGGGCGACCTGGCCTATATCGCGTGCCGAATTAGAGACACTCT
TGGCCGGGTGGACGATGAGCTAGTGCATTCGGCAATCAACTACCTCGGCCAAGCAAAGAG
GGACGACGGCCTGCTCACTGCAGCAGGCAGTTTGCCGGTGACAGACATGAGAGTGGTCAG
CTGGCTTGGGATGCCACTGTATGATGTGGATTTCAGATGGGGAAAGCCATTGGCTATGTT
GCTTGCTGAATCAAACCGCAGAGGTTATGTGCACTTGATTGGCAGCGGGCAGGGGGATGG
CAGCGTGCGCATCGTCATGTGTACAGAGGCTGCAATCCTCCAGGAGTTCAAGCGATTGTT
CTATGCCAAGGTCAAGAGCATGGTGTATTCCAAGTTCTAGCCGCACCTCCATTTTTCTTT
TTTCTTTTCTTTGAACACCTCCTATGCTATGTTGCTTAGCCACGATTTATTTTTTATCTA
AGTGCTTGTCGTCGAATAATTTGTATGTCTCGGAGTGTGTAGTGTAGGAGACATGGACAA
GTCTGTGCTTGCTTTTGTTTCAATGCTGTTATTTTTCATGAGTAGCCTACTGATGAGAAG
CTGATGTTCATGTGCTTGTCAGAGAAATATTGGGTGGATGTTGGCAAGAATAATTTTAAC
GATGAAAAATCTTTGCCGAGTTTCGCTATGAGAAGCTCGGCAAACCACCTGTTGGAGTTA
ACAGTGGAAGTATCAAGTGGTAAACTTGTTGCGTCACAGTTATTCCTCGCCCTTCATTAT
GGTTAGCATGCAACTTGTTTGATGCTTGATAGTTAGTTATAGTGATCATAATTCCTGTTT
ACACGTTTTGTAGTCGTTCTTTTGTACTTCTGGCAAAGCAGAGAGCATCTATAATCGGGG
TAAACCCAACCGCCTGTACATTCACGGACACGCCAATCATGTTAGTGGATAGTGAACGGT
CACCCCTCATTTTTCCTTCATTGGATCTAACTACCTCATATTTGATACCTTAAATCCATA
CAAAGCATGCAAATTAAAATCTACCTACTAGGTAGATAACCTACACTACTCATTATCGAA
GATGTCAGCGATCTCGGTGTTGGTAGTGCCCGATGACCCTTCCTCCTGGTGGATTGCCGC
CTGCTCCACCTCCAGCCCCTCGTTAGGGTCCATATCGGCGAAGATCTCGTGGAGCTTCGC
ATCCAGCGAATGAAGGAAGCAGCGGTTGGCCTCCACCTCCAACTGGATGGAGTTGACGAT
GACCTGTTGTTCCACCGCCTCCTCTGCTTGGGCCACCTCGAAATCCACCACAACCTCGGG
CATGCCGAAGCCCGCATCTGGAGGTGCTGGTACCGCCTTGCCTGTGTCAGCTGTTGGGTA
ACGTAGCATAAA