Map Locations of contig_58321 (9576 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_58321

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70666 2 2023 bp MLOC_70666.2 Available Available LOC_Os05g28190.1, FRAME:-3, EVALUE:3e-161, 13105.m02902 protein ranBP1 domain containing protein, expressed





CDS Structure of MLOC_70666






Contig Sequence (9576 bp)

>contig_58321 9576 assembly3_WGSMorex_rbca.fasta
AATAGATGCGGTAGAACGATGAAATCCTTGCTCTNNNNNNNNNNNNNNNNNNNTCCTCAA
CACTGAATCACTCTCTCAGTGATTTGACATGGGTGGGAGAGATTGATTTTGTGGAAAGCA
NNNNNNNNNNNNNNNNNNTCAAGTTTCAAATGATTGGATTGAATTCTCTTGATCTCAGCA
CATAGGTAGGTGGCTATCTCTCATAAAAATGGATCTGACAAGTGTAAGTGTGTTCTGAGT
GCTTCATCAAGAGGTTTCTCTCATAATCCTTTAGCCAAGGCATTTTTGAACTTTTCTGAA
ATATACTTGAAAAAGATCATTAGTTCAATGATGCATATGTTGTCATTAATTTTTTAAACC
AACTTAGAAAGCAATTGTGCTTTCAACACTTTGTAAAGCAATCATAATGTTAAAATAACA
AAATGTAGGCTTTAACAGTAGTGATGATAATATAGAAAGCAATAGATCTACACACTACCT
TGTGATTCCAAGAAATCACTTTGAATCTTACATTTGTATTTGCAAGAAATTGAAAATCTC
AATTGCAAATAGACGTATTAATCTCGACATGTGTTTAACATGGAAATAGATACGTCATAG
AAATAATCCGGAATACATTGTACTCAACGAAAAATCAGTACTGTAGAGGTACTGAATTTA
TCTTTGCAAGAGATAAAATAATCTCAATTGCAAATAATAGATGTAATTAATCTCAACATG
TAAGAAACATGGAAATATATCACATCACATTCTGGAATACAATGTACTTTACAAAATCGG
TATTTAAGAGAAATACTGAAAATAACAAGGTCTAAAACATGCAAATACTAATAAATAGTA
CTAATGTTAATAGAAGTGAGAGAGAGAAAATGAAAAAAACGAATTCCTCAAGAGGGCAGG
CCGGGCGTTTGGGCCTGGGCCGCCATGACCTTTGGCCGGACCGCAGCCTCCCGCACCACA
TAAGAAGAAGGCGAGGGGTGGGCGGTTACGGATAAGGGTTCGCCGCCACATGCACCACCG
CTCGACCCCCCTCCTCCCCTCACCACCACCACCACCTGAACCACCCGGTCGACAGGCAGA
GCCGCCGTCGCACTCCCCTGCACTTCTGCATGTTCACTGGCTGGTCGCGGACGAAGTTGC
CTCCCCCAAGGAAGAGGAGGCGATGGCGACAGAGACACGACAGTCTTTCGACGACAGGGC
GAAGGCGAAGCCGAGGTGCACTAGATCCCATGAGCCGACGCGGCGGCCGATGGCGACAAC
CACGTGGGCGGGCGCGGCACAGCCTGGCACGACGAGGCACGGGCGGCCACGGCCTTGCCA
CGCGTTGGATTTCGCGTATATTGGGGAACTAAGACATCAAGCCGCCACACCTTGTTCTGT
TTCTCACCTTTTGCATGTCCTTGTTGTTCTTTTCGTCGGAGTCGTTCTCGGCGAAGAGTA
GTGCTGATAACGTGTTAAGATCAAACGAAACAAATGAACAAACTATCTTTCATTGATGAT
GAGTGAACACTTATATACAACGAAAACAATCGCCTCCAAGGAATGCGATGGTCTAGATAG
ATACCATTTCAAAAACCGTCGCGGCGGTTGCTGAAAGTGTGCAACCGCACATGTTCGAAG
AAACGGGATTATCCCGTAATAACCGCAATGATTATTTATTTTTAACAGTTTTTTTTTCTT
GTTTCCCGTGGTAAATAAAACGTTTCTCCTGCAAATCAAGTGGAGTTATTTTCTTAACAG
ACCTATATGGTGTTTATCACGCGGCGCGAGCAAAACCCGAAAATGACGGCGTTCACCGTG
CCAAATCGCAAGCCTGATGGAGCAACCAACCGCGTGGTACGTGCGTGCAGTTTTATAACC
TGTCGTTTCGTCCCCGAAAACAAGGGAAACAGGAAAGGTTAAGAGCGATGGCTACCCAAC
CACGAGAGAAAGAACAAAAGAAGATCGCTAGCTACTCATCCCATAGCAGTAGTACGCGCG
GAGCGAGACTAAACATATTGCACTTTTTCGATAATAATTGCATGCTATCTGCATCAGCTG
TGGTGCGTGCGTGCGGCGATCTTTTTGGCGTCTCGTCCTTTTCCGCCCAACCCTATCGCG
CCGCGGAGCCACGTCCGCGTGTTTGTTGTTTTATTACGTACTGTACCTAGACTAGGTAAA
GTCCGGTCCACGTCGCACTCAGCTCGCCGTCGGTTTCGGATGCCGGACACCTTGCCTTGC
CTAGGTACGCGGGCGCGTGAATGGCGAGGTGAAACTGAGTGCGTCCTCCTGAATTGTCTG
TGAAACTGTGATGAGTGATTCCAGAACGAAAAAGATGTTTTGATTGATACAGGATGTCCA
GTCATGACTTGCGTAACTACTACTCCCTTCGTTTCTAAATATAAGACATTTTAGAGATTA
TACTATAAACAACATACAGATGTACATAGACATATTTTAGAATATAGTTTCATTTATTTT
TGCTTCGTATGTAGTCTCATAGTGAAATTCTTAAAAGGTCTTCTATTTTAAAACGAAGGG
AGTACTACTCCACAAGACAATGTCGGGCTGGCGCTCGGCGGGATTCCAAAACTAGGAAAA
ACGTTCATGGCGTGTTTTTTCCTCTTTTTCTCGCGTCAACTGCAAACGTGACCATTTGTA
CTCTCTTCGCTTTTAAATACTCTCCCTTTCTTAAATATTGTATTGTATAAGTTTTTTAGG
GTTTCACTACTGATTACTCCCTCCGTTCCTTAATATAAGTCTTTAAAGAGGTTTCATTAG
TGAATTACATATGGATGTATATAGACATACTTTACAATGTAGATTCATTTATTTTACTCC
GTATGTAGACTCCTAGTAAAATATCTTAAAAGACTTATATTTAGAAACGGAGGGAGCATA
TAAGAATGAAGGGAGCCCTACATAGCGACGCTTCCGGTGCTGCGGTTTGCTTCGCGTATG
CAAACTAATACACCAGCATGACATTAGCAAAGATTTATCTAATGTTAATTTTAAAAAAAA
TTTATTTCTTAAACTATAAATCCAATTAACGATCCGTTTTCACCGTTAGCTTTCTCGCAT
TGAGATCTTCGAAGTTAGATCCCATGTTGACATGTTTCGACAATATATTTTTTCCGTCGA
TAGTTGCCAGAATACTATTATTTACTTGTCACATTATTTGTCACATAGTTCTCACATTAA
ATTAACTTGGTTATCAGGTTTATGAATGTCGATATATACCTCACTAAAAACTTAATTCAT
TGTGTTTGTGCTGGTTCATGCATTTACTTGCTTATTGTTAGTGCTTTAGTANNNNNNNTT
TAGCTCCACATAACACTGCAATACTTAAAAGTTATGAAATTATTGTTCCAGTAACTATGT
ATAATTTTTGTAACAACTGCACACCTGTAAGATGACAACTATGATAATATAAATGTGGCA
ACTAAGAACCATGAAAAAAAAAATCAACGAAACATGTCAACATGAGATCTTATTTTGAAG
GTCTCGTCGAGACGAACCTAACGATAAAGGCGAATCTTTAATCAAATTATTAATTTGTGA
GATAAATCATTTTTCAGCCCGCGTGCATGCATGCATAGAGCCCATGCTGTTGTGGAGCAG
TTTGGAAGCGACGGGTGCCTTTTTTTTTAATGTTTGGGCGTCCTGTACGCACAAGAAAGA
ACAGGGTACGGCGGTGCTAATTAGATTTTTCCAAGAATGTATATATAAGCATGATTTAAA
GTATATATTCACTTATTTCACTTTGTATGTACTTCCTCCGTTTCAAAATATAAGACCTTT
AGAAATTTCATTAGAAGACTACATACGGAGCAAANNNNNNNNNNNNNNNNNNNAAAATAT
GTCTATGTACATTCGTATGTAGTTCATAATGCAATCTTTAAAATGTCTTATATTTAGGAA
CGGAGGGAGTACTAGTTTTTAATGAAATATCTAAAAAAACTTATATTTAAAAATGAGCAA
AGTAATAAATAATTAAAGTCGTCTGGTAGATCAAAAGGAAACATGCTTGCAAACTGACCG
TAGCTCAGATGTGTGGTTCCTTGTGATGGAATCAGCCAATTTCGTTGGTTGTTGTAGACA
TGAGAGAACATTCACAAAAGCTTGGACTCCATGGGTAAAGGAAAATATTTAGGGCCACTT
TGATTCACAGGATTTTTAAAATGCAGGAATAGGAAAAACGTAAGAATAGAGTGTCATGTC
CTTCTATATCAAATTTGAAAGTATGTTTGATAGCACAGAAAAAACAAAGAAACTCTATAA
AAAGGTTTGAGTGGATGAAAATTTTCCTCTAAAATGTAATATAAATTAATCCTTTGAAAA
AAAATCCGGAAAGATTGAATTCCGCCGCATATAATGGCACTGTATTGGCAAGTAAAAAAA
TAATTACGGACTGCTCAAGCCTCAAGAGACCTCAAAGAAAAAAAAATTGACTCCATAATA
CAGACAGGCCATCGAATTCCAATGGCCTGACCCATCTATTCGGAAGTGCAGGATCCGATG
AAAAAAACACGGCAGCCCAAATTGTAACTGACGGGTTAAAGATGCCCAAACACGACGAAC
ATGCATTCACTAGTGATGCGGTCATCTTCTCAAAAAATAAAAATACTCCCTCCGTCCCAA
AATAAGTGTCTCAAGCCTAGTACAATTTTGTACTAGAGCTAGTNNNNNNNNNNNNNNNNT
ATTTTGGGACGGAGGGAGTACTAGTGATGCGGTCATGACTCACTAAAAGATACGTTATGG
AACAAGTATAATACACATCGCATATCAGAAGAAAGCATGGCCGGAAAGAGTCTCATTTCT
CCAGTTTACTAAAATTATGACTTTAATTAAAGTTCGACAGACCACCCACCGTTCCAGAGT
CCAGACCAGCAACAGGACACACCAGAAACCAATACGTTTTAACTCAAGACAAGACTCCGG
GAAGAGCAAGGAACACCTGCTCTGACACATACACATCAAAACGCGGAACCGGGGTGGGTT
TCAAACGTCGGAAGCCTTCGGGGAGCTCTCTGGGCTCTTCGGCGCGTCTGAAGCCTTCTT
CGCCTTGTGCGTCTCCACTGCAGCCTTGAAATCTTCCCGGATGCCCGCATCCTTAAACTT
CAGAGCAAATGTGGTGAGCCCGCTCGGTGATTCGCTGATGCTGTTGATGCAAGCAAACGT
CACGCCCTTCTTGTCCATGTCCTTCAGCGTCATGTCGTCGTAAAGGCTTGCATTCAGAAT
GAGCCGGTAGTTGCCCTTGGCCCTCATGACGAGCCGAGATCTCTCGCCACCAGATACCGG
GATGTTCAGCTTCAGTTCACCCTTTCCTCTTTCCTTCCAGCCACCATCGAGGTACTCATA
TATTGCAGAGTCAGCAGTGAACACAGCCTTCTCGTTCTCTTCGCCAGTTTCAACTGGGCC
CTCTGACATGGCAAATTTCTTCGGCGCCTCCGCTGCAACGCCGAGTGCTGGGGCAGAGCT
CCCGTTGTTGGTAGCACCAATGTTGAAAGAAGGGAATGATGAGCCATCACTCTTTAGCCC
AAACAGGGGAGCATTTGAGCTGTCTTTAGAGCCTGAGCCAAATGAAAATGATGAGCCTGA
AAATCCAGTTCCAGCCAGTCCCGTGAAAGCATTTTGGCCACTTGACAGATTGGTGAAGGA
GAAAAGAGGCGTCTGTGATGATGACTGCCCTTTGTTATCAGCATCCTTCTGCTCAGAAGG
TCCATCCTTGGCCCCTGATTCAGCTTCATCTTTCTTCTCATCATCATCTTTGCAGATTTT
ATCCTCACCTCCAGCTTCATCTACTGATTTCTTCTCTTCAGCATCTCCATCTTCTGGTTT
GCCCTCAATTCCAGATGTCCTGGTGTTATCTTCCTTGGGTTCTTCAACAACCACTTTGTT
CTCACCAGTTCCATCCACTGTGTCTTCTGCCTTGCTATCTGACTCATCAAGTTGAGAGGG
TGCTTCAGTTAGGGCACTGGACTTGTTTTTTGCATCTGACTCTTTCCCACTTCCATTGCT
AACATCAGAAGGTGGAGGCTCTGAGACTGTGATATTTGCTTGAACAACAGGATCACTGGG
GGTGAATCTAATTGCAGAGAAAGGATTAGAAGAAGGAGCTGCTGACGGCTGCTGACGCCG
AACCTTTACAATCTTTCGGGTTGCCATCACTTCCTCACTGGCTTTCTTAAATGTTCCTGT
TTCTTGTTCCGACGAGTCATCATCAGGCTCAGGATGATCCTTGTTGATTTGTTTTTCTGC
AACCCTCTTCCTAGAAGTTTGAGTATGTTCCTCGTCCGCCATCCTGAAAACAAAAAACAT
GAGAACAAGCTGAAGATAACATTAACAAAATAGTTTACAAATAAACATGCAAGATCACAG
AGAATAGTACTGTTTCAAAGCATTTTTTTTTACTAAGCAGGTTCTTGTTTTTGTAATGCA
CCAACCAACCTACTGAATAAAATGTAAAATGTCGCATGTTGCGCAATATAGAACATGAAT
ACTTTCCCAATTTTACCTGGCATCTGGAACTAAACACTAGACAGGATTTGTGAAGGAAAG
ATATATTGCTATAACAACATATAAAATGGTAAGCACTATGCTGGCACTGTTCTGGGCAAC
AAATAATTAGCTGCAATGTGGTGTTGGCACAGTACAGGCATACTGAAGGCATGGTATCAT
CTCCTAGAGAACTAGAAGCCATGTGCTCCAGTATATGTTACAACTCCCGCTGTCTAGTAC
ATTTCATGTGTGTAACATTATGCTTCAAGATAAGGTTCTATTTAGCAGCTAAAGCAGAGG
AATTTCTATACAACAACAATGAGAAATATTTAACCCAGGTATAAATAAAATTCTAGCCTA
CTGAAATATACTCCCTCCGTTCCTAAATATAAGTATTTTTAGAGACTTCACTCGAGGCTA
CATACGGATGTATATAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTATGTA
GTCCATAGTGAAATTTCTAAAAAGACTTATATTTAGAAACGGAGGGAGTGCTGATGTACA
GGAAATCTCCTCATGGCAGCCAAGCTGCAGTGCAAACAGGAATGTTCTTCATTTTTTTGG
CATGGCAAGTTGTGAAAAGTTAATCACATAAATATTGCTAAATAGTGTGAAAAGAACACA
CTAGGCTATTCTGGATAATTGGCATAACAAACAAAACAAGAATACTAGCCATTAGCCAAG
TGACATAAGTAGGTGGTAGTGACAAGTTACAATAGATGTTATTGATGTAGAAGGCAAAAC
ATCAAAGCTAGAGCTCAATATACAATAGTTTGAATGTTTCATTCACAGATAGCAAAACTT
TGCAGCCATAGTCATATAGTATTTTATTTCCAGTACATATGGTGCATAAAACTAGCTTAT
GGGAAGAACAAATCATCCAGTGTTCATTACAACATGTTACCTAAATTAACACCCAAGCAG
AAACTTAATGATTTAACATATCTTGCACACAATTTATCATGGTAGCCTACATGAGATATT
ACTTTATGAATAGCACCAAGTTCCTTTGAAACTTGGATAATTCATGTCGCATGGAGATAT
TCACCCTAAACCTACAACTATGTAACATCATAAGTCCGTAACTGCCACGTCGCTATTAGA
GCTACATTCAGCTAGATACACATTTGTTTCATGTCTTCTAAAATGTTAATGTTCCTCACA
AGTTTTGAGTTTGTATTTCAAATCACAATATTTCTAGGCATACATAGCTACTTTTTACAG
ATCTAGACATACCTAGGCACATAGCTTAACATTAAGGTGTAGGTCAGATTATTATACTCT
GCACAAGTACATAGGAAATAGGGTCCATGTCAAAAAGTACACAACCCCTAGGCAAGAGAA
AAACTATCATACTAGCCCTAACATAATCCCAGAAAAAATAAACAACAGAGACCAAAGACA
TATCAAAATCCTACCAAGAAATTCATGATCAAATCGATAGCAAGTACGGAGTATGCAACA
ACAGGCATAACATACACCAAAGAGATAATACTCCAAAATTAAACACCAAGATGAGTCGCC
ACCTGAGAATTTTCTCTGAGAAAGTAGTAACCCATGAATCCGTTACGAATAAAACTATCC
ATGATACAGGCTACGCACCACAGTATGGTTTTTGCTGTCAGAAACCAGGAACCTCTGCAG
CTACTACAGATCTTCCCAGTGCCGTCTCAACCTACTCAACGAGTGACCCATTACCGCATC
CAACAACCTAGCTCACGTCTCAACCCTAGTCCGAGAGACGTAGCGCGTGGTCCCCGCCCG
ACGCGTGAGAAAGGGGGAAAGCAGGGGAGGGTAATTGTCGCACCTTGCGCCGGGGAGACG
AACTCGACGGCACCGAACGAAACCGGCCGGATCAGGACGGCGGGGAACCTCCGGCGGGGG
GGCTGCGCCGACGACCAGGGCGAGCCGCTACGGAGGGCAGCGACGAGCTCGGACGGAGGC
GTGGCCGGGGAGGAGCAGCGCGAAGAAAACCTAGGGAGGGGAAGCGGGCGACGAAGGCGT
GAGCCGAGTGGCGACGGCGGCGCCTAGATTTTGCTCCTCCGGAAACCCTTTGTGGTTTCT
ACCTGGTTGAATCACCGTGATGGGCCTTAATGGGCTGAAAGGCCCGAGCAACGAGATGAT
ATAAGGAAGATAATTTTGTTACCCGTGAACAAAAGGAATATATGATGGGGCTACTACGCG
TCCTTCGGCGATTTTTTTTTTTTGGCATTCCAATCAGATAGCTTTATTCAACAAAGTAAC
TCGTGGCATCATCAGCCAAAAGGCTAGTGAGCAGGATGGAAGGTCTCGTGTCAGTTCAAC
TTTCGATGATCGTCACTGTGCAAGCAAACTTAGCGCAAAGATGGACCGGTACATTGGATG
ACCGATTTACATGTTTGAATATCAAAAGAAGAAAAAGAGAAAGCTAGCTCTCACATCTCT
AATAGTAAATGTGCCATCACAAATAAGCTATAGTAATGAGTTTTCCAGAGATTTACAATC
TCCAAGCAGTCGGTTTCCATGATCACATGTGAGAATCCGCGCAGTTTTGCAAAGATCACC
CCATCTCACAGTGCCATAATCTCACCAATGAAAGGATCACACACCCCATAGTGGGGTTTA
CTCCAAGGTCCTGGCAAAGCATTGCAGGAATGCGCAACACCGCCCGCTCCAACTTTGCCA
GAGTCCATACTTACAGTCGCGTCTGTATTGATCTTGATCACCCCTTCAGCGGGTGGTCCC
CATCCATGTCCCGGGAGAATGGAAGCATGAGATTGGGGTATATCCAACAATGCCAGATCC
TCCCATATACGCTTGACAGAAATGAACGGGTCGAGCTACTCATCATCATGCGTAACCCTG
TTTCTCGAGTGCCATATAGACCACATGACCGAGATCATCTGAGCCCTCTGTACATCAAAA
AACTGTCCATCGCATAGGATATCTCGAGACCATGTATCTGGGTGTAGGCGGGGTGTAATG
CCCCAAGTGTAAACCTACCCTATTTGGACCTACTTCATGTNNNNCCACCTTGTCATTGAT
ATGAGAGTGGCCTATGCTTGTATGATTTCATGTGTC