morexGenes - Barley RNA-seq Database

Contig contig_58254
Source Contig contig_58254
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_58254 (8268 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_58254

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70627	1	508 bp	None	Available	Available	None
MLOC_70628	3	1615 bp	MLOC_70628.2	Available	Available	LOC_Os08g40170.1, FRAME:-3, EVALUE:0.0, 13108.m04293 protein cyclin-dependent kinase B2-1, putative, expressed
CDS Structure of MLOC_70627

CDS Structure of MLOC_70628

Contig Sequence (8268 bp)

>contig_58254 8268 assembly3_WGSMorex_rbca.fasta
TCTCTCTCATCCAACTCAGCAAAAATATAATATTTTAATCCTTACAGCCTGCTGACTTAC
CTTATTATACTTGCTCTTAGGCTTAAGTCCCTTGTGTGTAGTGCTTAGTGCACGTGCTCA
TTTGGAGCTTCCTCATGTTTTCCTTTTCTGTGGTCGTGTTTTATTTGATCCTCTTTCTCT
TCTTTTCAGAAAAGGTAACTGATTCTTTGTAGTCGTCTGACCTTGTACAAACCGTGGGTT
GTGCAACCGCTTGAGTGATGGCTGGCTGAGGCTAGCAGGGACGTTTGTGCTCTAGATCAT
GGGTGGCAAAATCGATAAAATTGATCCCTAGACAAAACAAATTCAAACCATGTTTAAGAT
AAATTCATTCAGCTGATCCTTTTGTGTGGCGCCCGACAGTCGGGCGTCACACTACACTAT
GTAACGCTTAGCATATGAGCGTTACATTTTTGGCAAACGTGGCATCCGGGACCACACTCC
TGGTTGTGTGGCGCCTAAGAGAAATGAGCCACACTACATTGTGTGGCGCCTGACTGAAAG
GAGTCACACTATCTTATATTAAAACTGATGTAACTTTTAATCCGTACGTCCGATGAAAAC
ATGCCTTATATGAATATTGTGTAATTTTTTGTGTTCTACGCAATGGCGACATTTTCAGCT
ATATTAGGATAACTTTTTAATGAAAAATCTGTTATAAAAATACATCATAGTATAACTAAC
CATATTTGTTAAGACTTAAATTTGGCATGATGATAGCCATTGGCCTATAACTCTTATGTA
TTTGAATCCTACATGAGTTTTGCACTACATAATGTGTACGTTCACGTCATGCTTATGCTT
TCCATGTTAGTCATCTTAAACATGTTCATGTCTTGCATCTAAGTGACTAACATGATATAA
ATGAAATTCCATTACAGAAAGCTACATTTTATAACATCCATAGTAAATCTAGTGAAGGAA
GACCCAATATGTCTTGAGCAAGAAGAATCACGGAGCCCATCAATCCACCACATGCAACAT
GTCTTGTGTTCTTGGTTTGTCCCCTTGCATATTGCAATATATAGGATAACACGTACCTTG
CAAAATTCAAAAGAGGCTTCTCCGAGTAAAAACCAACCGCTGGCATATCATGTTGGTTAT
GTGGAGCTAAAAAGTGGGTATTAAGGCACTAACAATAAGCAAGTAAATGCACGAACCAAC
ACAAGTACAATGAATCAAGTTTTTTAATGGGGTATGTGGACATTCATAAATCTGAGAACT
ATGTGACATATAATGTGACAACTAAGTGATGGTAATCTGACAAGTACCGACGAAAATAAA
AGTTGTCGAAACATGTCAACGTGAGATCTAGTTTGAAGATCTCGTCTCGACAAACTCAGT
GGTGAAAACGGATTTTGGTCAAACTTTGCGTAGTTTGATTCCAAACAAATTTTACATGCA
GAGTAAAAAGGAAATGGAGGGAGCATAATACAGCAAAGTCATAGCCGCCATGTTTTGTCT
CGTTTCCTCGAAGAAGAAACAAGCACCATCAACATGCACTTTCATCACATTTCATCTGGA
ACAAAGAAAGCACCATGAAATTTCACCACATTTCACCTAAAAAACAGAAAGCACCATCCA
CATTTAGTAAATCGGTATGCTCCTATTGCCAGCAACTTTTTTTGCTTGAGGAAGAACTCC
ACGTCTTCTCACCGGTCTGGTGGTAAGTCACTTCATCAGTTGACCTGTTCGCCTTGCCTA
CATTTCATTAATCATAATTTTATAATTTCAACGAGCACCAGGGAAGGGGAATCACATCTC
TTTGCCTTACTGCAAGCACACACCTAAGATCTTATTTCTTCCAACTTCACATCAGGAGCA
AACAAATGTGCACCATCCTCACAGGTCAATGGCTATCATCATGTCAAGTTTGTAAGTCTT
AAAAAATTCAGCCACTTATACTATGATGCATTTTTGTAACGTAATTTTCATCAAAAAATA
TTCTAATATAGTTGAAAATATCGCCATTGCGTAGAACACAAAAAAATACGCAATATTTAT
ATAAGACACGCTTTCATCGGATGTACGGATTAAAAGTTATATCGATTTTAGTATAAGGTA
GTGTGACTCCTTTCAGTCAGTCGCCACACAATGTAGTGTGGCTCATTTCTCTTAGGCGCC
ACACAATAGGAGTGTGGCCTCGGGTGCCACGTTGACTAGAAGTATAACATCCATATGCTA
GGCGTTACATAGTGTAGTGTGACGCCCGACTGTCGGGCGCCATACAAAAAGGTCAATTGA
ATGAATTTATTTTGAACGTAGTTCAGTTTGTGAATTTGTTTCGTCTAGGGATCAATTTTG
TCGATTTTGCCGTGTACAGGAGGGAAGAATTGCGTCGTTTCCTGGAAGGGTGCATGAGAG
TGAATATTGTACCCTAGGAGAATTGACGTGTCACTGCTTTAAGATTTACGTGCAGAATGG
GACTCACCTAAAAGCATTCCGTCGAAAAACTCTCAAGGAACATAATTTGACGCGCATTAT
CAGATGATAGGTATGGGCTCCCTCATCACGCTAACGCCCGGTCCATCTAGAAGGACAGGA
ATGCATGCATCTTCAATGACGCCCAACCATCCGTCATAGCTTGTTTTGGGCATCCAGGAA
GGCAAACGCTAGTGCAAAAGGGACTACTTATATGCGAGATCTTCGACGACACCCAACCAT
CCATGTAAATTAGCGTTCGCTCTACGGGAAGCATCATGTTCCTCTGCTCGCTAGCGCCCT
TGGCTGCACGTCTTTGGTCTACGTATCTCTTTTTAACACAGTACACACGCAAGTGATTAT
ATACACGCGTATATACACATTCCTACAAATGTTCACACACATATCCTATCCTTATGAGAA
ACTCCAAGTTACTGAGTCGACATATCATCATGACATTTATAAAGTTACAGTAGGCACCTC
GTCTCTTCTCTCACTGAATGTGCAATGCCGAAAATTCTGAAATAAATCCAGGAACAAATG
CAAGCATCAGGATTTGAACCCTAATGGGTTGAGATACCACAGTCCCTTTAACCATCCAAC
GACACGTTCATTTGGTGTACGTAGTTGACGGACGTTTTGTACCTTGGGTTTACGAATTAG
AATCCGAGTTTGCCCACAAGGCCTTGAGTTTTCAAAAAATGTTGTCTTTTTCAGTTTTAA
AAGTTGCGTTTTAGGGAATTTGCTATCTGTTATTTTAACGTGGGCTTGATTCTACTATTG
GGCTAATTCCCTTCATATGGAGGTGTGTTGGCAACCCAACATCAGTCTATAAGTCCAACA
CATGTCAGTCGTTGATCTTTGCATCCAACGGTTGAGAGTGTTTCCAAGAGAAAGGAAGTA
AGAAGAATACCCTAGCCACTCCACCCTGCATGTGGTGGCTGCCATTCTGAGAGTGAGAGA
GAGGAAGAAGTGGAGGTTCTATCCAGATTTGATGCATCTGATCAGACAGTGTTCAACCTG
GCGATTGGAGGCTCAAACGTGCTTGGATCGACCCCAGACTTGGTGAGCTCGTTCCTTTGA
GTACTTCGATCTGGTTAGCTGGTTTGAGGATTGGGTGAGTGGAGAATCAAATTTGCGAGT
GGTTTGTCAGCTCTGAGTGCTCCAGTTTCAGAAGAGAATAGTTTTGGGAGACGAATAGCG
GTAGGCAAACAGTGTCCGATTGAGCTGAAATTTTGAGGGGATCTAAGAAATTTGTGTGTT
GTTTGCCAAATTTGATGTTGTTTGGTTCAACGACTTAAGAGCAGTTTGCCTCTTGCGGTT
GTTGTTGTTGTTACCAGTTGGCAATGTGAAGAGTGTTGTAAATCTCTCTAGAGGTTAAAA
AAAGACTTTGTACTCATCATTCTTATTGTGAAGTTATGTGAACCGGTCGGTCCACAACCG
TGATTTTTTACTCTTCAACTTGAGGACGTTTTTCCACGTTAAATCTTGTGTCACATGTGT
ACGTTGTTTGTGTTATTTCGCTGCGTACTAGGTTGTTCTCGTAGTTCATCACAAGAGAAG
GGGACTGTGTGGTGTGCATATTTGCCGGGTAGATAAATTTATGCAGCTCATTGTTGCTGT
CTAGCTCCAACATCTACATGATTTACATAACAGCAGCTTGCCGCTCAAACAAACCAATCA
GCGGAGACAGCTCAAGTTTGTACCTTTTGATGTCACTAAACGGTCTGGCAGTTCACCAAG
TCTCAGAAGTCTTTTATATTTATCAAGTTTTCCATCAGAAACAGAAATGAATGGCATACA
GTATAAAGCCTGATTTTGAAGCAGAAGCAGAAGCAGTGCTTCACAAGACCAGTGTTTGAC
ACCTGACAAGAGGGGTTTAATTATGCATAGTTCCATAGCCACTATCCATCACAACCATCA
GTCAGTGGTGCAAACTAAATGGCAGCTGGAATAACAGAGGTAAAAATGCCTGTCCTGGAA
GCAAAAGATATGCTTCAGGACAAGCACAAATCACAAGAAATCCGCTTCTTGTTAGCCACC
AAGACAGCTTCAGTACAGCGCCTTGTCCACATCATCGAAGTATGGGTGCTCCATGGCCTT
CTTTGCAGAGATCCGCTTTGCCGGCTCATACTGCAGCATTTTCTGCAAGGATCACAGCTA
TAAGTTAGCACGAGATTCTCACAAGGGCACCTCTTCTTCTATGTTTTCTGCAAGGATGCA
CATGCTTGATTACTAACCTCAAGCAGATCAATACCAACGGCATCGAGACTGGGAATTACA
GAAGACAGCTTTGAGACGTTCCACTGAGGGTACTCATGCCAGTTGGGGAGCTTGCCTACT
CCTGGCCAGACCTCCTCATTTGGAGTGCCCAACAACCTAGCATTCAAATACCAATACAGA
ACATCAACAACTGATGTCCCCTAGAAATGCCAAGTGAGAAAACAAGTAAAATGTGACGGG
TGTGGTACTGTACTGGAAAATGTGCAGGAGCTGCTGCACCTCAGAGTCTCCAGGGAAAAG
TGCCGTGGTAGTGATCAATTCAGCTGCCATTTACAAGGAATTCAGCATAACAACCTAAGA
GGGTTAAATTCTGAAGGTGTGCTCAGTTACAACGTTAAGTTCATACCAAATATGCAGCCC
ACAGACCACATGTCAACGGGCGTGGAGTAGTGTGTGGCGCCAAGAAGGACCTCAGGAGCT
CTGTACCACAGAGTAAGGATCTGCAAAAGAATTCAAACAGCGTCATGTACAGATCAAGTA
GCAGGAATCATGCAGATTCAGACAGCAATCCGGCACTAATACTGCTAACAGAAGAAGGAA
TCAGACCTCGTGCGTGTACTTCTTGAGAGGAACCGTGAAGGCACGACTGAGCCCAAGATC
GGCGATCTTGAGAGCCATGGTCTTGCGGTCCATGAGCAGGTTGTGCGGCTTGAGGTCACG
GTGCAGGACACCGCGTCCGTGGCAGAAAGCCACGCCCTTGCAGAGCTGGTACATCAGGAT
CTGTACGGACGGATAACCAATTCACCAAACACCGAATCAATCACTGTCGGCACATTCAAA
CAAACACCTCGCGTGCAAAATATGGAAAACGAACAATAAAGGGCCTGACATATGTGAAGA
GGGGGTACATTCAAACAAACACCTCGCGTGCAAGGTATGGAGAACGAACAATAAAGGGCC
TGACATGTGTGAAGAGGGGATATTACCTTGACGGTGTGGGCAGGGATCTTCTGGTGGTTC
TGGCGGTGGCCGCGGATGAACTTCTTGAGGTCGGTGTCCATGTACTCGAAGACGAGGTAG
AGGATGGTCTGGCCCTCCTTGTTCTGGCCCTGCTTAAGGTCGAGCAGGCGCACGACGTGC
GGGTCCTGCGACAGCATCCGCAGCAGCGAGACCTCCCTGAGCGCCGTGGGGGGCACACCC
TCGTCGTCCTCCGGGAGGCGCGTCTTCTTGAGCGCCACGATCCGGCCCGTCGCCTTCTCC
CGGGCCTTGTACACCTTCCCGTAGGTGCCCTCCCCGACCTTCTCCAGCTTCTCGTAGAGG
TCCATGGCGCGCAGGCCGCCGCCGGTCGTGGTCATCGGCGCCGCCGCCCCCTGGTTCTGG
TGCTGGAGCGTCGCCATCGCGCAGATCCGCGCTTTCTCTCTCTCTCTCTCTCTGGTGGGT
TGCCGTGCGAGACGGGTGATTTGGTGGGGTGGCGGCTGTGGTTAGGGTTTGTGATTGGGG
AGGGGATCGTGGGGGAGATTTGTATGCGAAAGAGCCGTTTGAGGGGACGCGCCGTAACGG
CTGCTTCGTGAGATTTCGAATTTCGAATTCTGTACGCCTTTCTGGGTCGGTGGGATGGGC
GCACGTTCGCACGAAGGGATCGATGCTACGACCACTTTACAGGCCGTTTCAAGCTGACAA
TTGCAAACTGCCTTCGTATGCCATGGGCTGGTCCGTGGTACAACGGCCCAAACAGAGCAC
ACACCTTTTCTTTAGGAAAAAAAAAAGATAATACTATGCAACACTCTACTTGAGAGTTGG
CAGGTTCGCCTCACTTTTCCCAAGTGTTTTTCCTTCCCACGCCCTCCTTCCCGTTTTGGT
TTCCTGAAAATTTTCTAGTAATCTCAGCTGATTAAAACCAACATCAATAGAGTAAATTAG
AATAATCTAAATCAAATCAAGCTTTTTCAAAACCAAGTCATGCATTAATTAAATCAAATC
AAAGAATCTTATAAAAATCTCAACAAAATCAAAAGTTTCTCTCACTTCCTGTATCCACTC
CCCAATCAATCAAATCTTACTAAAAATAAATATATAAGTTGTGTTCCTCTATCCATACTC
AAATCAAATTAAATCTTACCAAAATCAAGAATATGATAAGCGTAAGATATATCTCAGAAA
GTTGATGTTGAATCATTAGCATATGTATGTTCATGTTGAAACGCAAGGGCAATTAGCTAG
TGAGGATACTTGAGCTAATGATACAAATAGTTTTTTGTGGAAATAAATAAACTACATGGA
GTAAATGATACGAAAAGCTTTTCGCAAAAAAAAAGATATGAAAAGAAGTGCGGTGTCTCA
AAAAAGAAAAAGTTTCTACCTGTTCGAAACGAAAACGGAAACAAAGTCCACATTCACAAA
CAAGACGGAAACATATGAAGAAAAAAACATACATGTTGGAACGTAAGTGCAAACGCAATT
TTGGATGGATAATATGTTTTCACATTTACACATACATTGGAGTGAAGGTTCGAGGCAGCA
TCAGGGTGAACCGAGAGGAGCCACAGGCCGCACACAGACAGGTGGCATGACCATGTCCTA
GGGCGCGCCCCTAGGCTGTGTGGGGCCCATAGACACCACCTTACGTTCATTCCACCACCA
TAAATTCATATAAATACAGAAAGCCTTCGAGATATTTTTATCCGATTTTGTCCACCATTG
CAAGCTTCTATTTCGAGGAGATACAATCTGGAGGCATGTTCTAGAGCTCTATCGAAGGGG
GAATCCATTGCCGCAGACTTCTTTGTTGCCTCCATGACCATGTGTGAGTAGTTCCATTAG
GATATGTGGGTCCATAATGATAGCTAGATGGATCTCTCTCTCTCTCTCCCTACCTCCATC
TCTCTCTTTCCCTTCCCCTCCCCCTTCCCCCCTCTCTCNNNNNNNNNCTCTCCCTTCATC
TCCCTCTCTCTCCCACTTTCAATACTATGTCCATGTGAGTTGACTCACTGATCGGGAGCA
ATTCGATGTAATCAGTGATGTATTTGTTGGGATATGATGAATTGTCACTTTATGATTAGG
TTCTTCATTAAATACAATTGAAACTTATGTGGTTTTCTTGTTGTATAATTAAATAGCTTT
GCATACTCATTGATCTATCTATCTTCTTTGGCCAGGTTTAATGGGGTTTCCATTACAGAG
AGTGGTGCTTTGTAGTGGGTTTAGTCTTGCCGTGCTCTAACCCAGTAACAATAAGGTCCA
AGTCACTATTGTATTGTTGCCACTAAGGATAAAATGATAGTATCTTGCTATATTGATTGT
TGTTTGATGTCTATGTTGTCATGATGCTTACTATAATGCTATGTTTCTTGTAAACTTAAT
ACTTCGAGGTGCATGATGGATATCAATCTTTAAGTGGAGCATTAGTAGTAGATGCACTTG
GATTAATGATCTACTTTGTTGGGGAACGTTGCAAGGGAAACAAAAAAAATCCTACGCACA
AACACGATCTATCCATGGTGATGAACATCTNNNNNNNNNNNNNNNNNNNNNNNNNNCCCT
TGTAGATCGCTAAGTGGGAGCATTCAAGAACGCGGTTTATGTAGTGGT