morexGenes - Barley RNA-seq Database

Contig contig_58206
Source Contig contig_58206
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_58206 (7778 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_58206

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70584	1	856 bp	MLOC_70584.1	Available	Available	LOC_Os06g15600.1, FRAME:+1, EVALUE:2e-35, 13106.m01725 protein plastocyanin-like domain containing protein, putative, expressed
CDS Structure of MLOC_70584

Contig Sequence (7778 bp)

>contig_58206 7778 assembly3_WGSMorex_rbca.fasta
CGGCCCCCCCCCCCCCCCCCGAGGTGCGAGTGGGATCCGTCTTAACTATCATCTGACCAC
TCGGAGCTCCTCGCTTGCGAACATTCGAGCGACCAATCTCCCCGAGAGATGAGCAAATAC
AACCGAATGAAGACATCCGGACCAGTCCGGTCATTCTGAACGTTTCAATCCTGAATCCAT
AGTGGCTTGCTTTGGATCCAAGTGGAACAACTTTCAGCTGCTTTCCCAACGTCTCCGAGA
CACCGAAGACACCACGAAGTGACTTTCACTTGACCAGTCAAACGTCACCGATTCGGGGGC
TACGGATGGGGTTACCTGCTAAGGGTAGGGCCATGGACCTGCTATCCAGGGCCCACCTAG
GGCCCCACACAGTCACTAAAGTCCTAGGGCTACAAATGTAGATGAAGTCTCACTCGGATA
TACAAAGTCACTCGGGTAGCCCCGAGTCAGTCGGATGCGCACCAGCTTTCGGACCAAGGC
AAGACGTGGACGACGAAGGAAGTGTAACGACCAAAGGACTTAACCTCTCATATAAATCAC
AGTGAAGCCCTACGTTACCAGTAACGCCGCAATTAAAGTTGCTGCTAACGGTAAATTCCG
TAGTTATTGTCATTTAATGCCCTTGTTATGGCACATACTAGGCCTTACGAATTCTCTATA
AGATGCCCTCGTGCTCTTGAAAAAGGGTCGGGCATTCTGTGTATTAACACCCCCATAAAC
AACACCAAGCCATTGGCCTCACGACGTAGTGTCTTTACCACCTCCGAATGTGGCCGAAGC
TCGTATATCCAAGTGTTACACTTATGCTGTAGTTCGGCTCCGCTTTTTCAATCGTACCCT
GGTACTATTGTCAGCCTCGTTTCTTGGGCACCGTGCGTGTTCCATTTCTTTGGATCAAAT
CGCAGTTCTGACCCTTTTTGTAATCTCTTTCATAAAGTGAACTCGACATGGAAGTATTTG
TTGATTTGACCCTTTTGACAACGCTAGAGACCATGGTGTTTCTGCTCCATATGGAAACCC
CTAGATAGCTTGCGTTGCCGCTCCATATAGAAACGCCTAGGTAGATCGCGTTGCATACCA
TACGGAAACGTTAGGGTATTTGGCGTTTCTACCCACGCTAGAAACATCATGTGGCTGGGC
GCTGCTAACCTTGATTTTGCAATCTTGGCTCTTGTCTCTTTCTTGTCAGGTCGACTTTTC
AAACCAGCGGCAATCTTTACTCCAGCAACGCCAACCCCGATGGCGTTGCTGCTTCTGCGT
GAGCGCCTCGTGGTCCTAACCTGCTTGTTGACAATCTCTACTTCAGTAACGCCAACCCCC
ATGGTGTTTCCAGCCTGGGTACAAACGCAAAATAGCCTGGTGTTGTCATGTAGACTGCAA
CGCGAACTATTTCGGCGTTGGAATGTGGAGCAGAAACGCAAGCGAGACTGATGTTTCTAC
ATGCAGCAGCAACACCACGGGCTGTGACGTTTTTAAAATAGTCAGATCGTGAACTACTTT
CAGATTGAATTCAGTTTATGACACATATCGCTGAGAGGGTTAGAACAGTGCAAAAGTCCC
ATTTCTTTGGTTCTCGGACGACGGCTCCGTGGATCATGGATCTCGAATAGGGTGGCAGCA
CGACAACTTCCGCGCATCATTTGGTCAACTTGAGCTCTAGCTAGCTAGCGACGACACACA
CGCCTGACTTGTGGAGCGATTACTGCACACGGCAGGAACTGTCGGTGCCCAACAGTCGTA
CAAGAAACAAAAAAAAAACCCGTAGACAGGTTTCGTGAACTCCGCCAAACATTGTATTGG
CAAACGCAGTGCCCATCGATCACATGCGCTCCTCTCTCTTATCCAATGTGAGGATTAATC
AACAGTACGTACCGGCCAAATAGGCGCGTCAATAGTCAAAGGATGGATGCACTGCACAAC
GTGTCATCACGTGCCATGAATAATGCGTTCATTCCTCCCCCATAGCAGTTCCAGTTCTCA
GCTTTCCATGAATAATAGGAGTAGTAGTTCACGTCCACAACGCACGGACGCCGCGCCCGC
GCTATAAAAGGCAACACGGCGAGGGCACCACTCCTGCAGCCGAGTCTTACCAGGCAGCAA
GAGAGAGTGCAGTAGCTGGTCTCTCTGCCGACAAACTTGTACGCGCGGCAACGATGGCGG
CTGGGGGAAGAGGCAGTGCTGGCAGTAAGGCGCTTGTCGCCGGCGCCGCGTTCCTGTGCG
TGGCCGCGGTGCTCCTGGCGGCCACCCCCGCCGCCGAGGCGGGGGCGACGACGTACCTTG
TTGGCGACGCCGCCGGATGGACGCGCAACGTGGACTACGGAGGGTGGCTGGCCGGCAAGA
CCTTCCGCGCCGGCGACGTGCTCGGTACGTACCTCTCTCTGCAATGCACGTGTGCGAGTA
GCCTTCGACGACTTATCCCGATCTGACCGTGCCGCGTGCGTATGTATGCATGCGCAGTGT
TCAAGTACAACAGCACGTTCCACGACGTGGCGTGGGTGAGCAAGGGCGGGTACAAGAGAT
GCATCGTGTCGCCCAAGGGGTTCGCCCCGGTGTACCGCAACGGCTACGACGCGGTCGGGC
TGCCCAGGGGCACGCACTACTTCATCTGCGGCGTGCCGGGCCACTGTAGCGCCGGCATGA
AGCTCGCCGTCACCGTCTACTGATGATTCCATCGTCGTCCACCTCCGGAATGCATCGGGT
GGCGTTGACCTAGAAGTCGCTCATCGTCCTACGTCGGGCTGGCGTGTGCAATTTGTGTGT
GTTTGCTTTGCGATTTGTGAGTTTGGCGTATGCATCACATGGAATGAGTAAACCTGATGT
TTTCTCTTGTAATAGGCGAATGCTTAAACTTCTCTTGCGTCATCTTGTCGTCTTTCAAAT
CTCTAAAGATGCCATCTCAAATCGTCCGCATACGTCTTAACCACATTGTTCGAACGTGCT
TTGTCATAAAACAAATGTGAATCGATATCGGTCCGTCGAGCGGCCCGGTCGCATTTTAAA
GGGCTTTGCGGTAGTTCCGTCAGCAGCCCTATAGGATTTTGACACTTCCGACCCATTAAA
TCCCTCTTGCGATCTTATTTCGTTCTAATATATTCCTTCTTCCCGTTGTTCTACATCCGC
ACTCTTCTTATCCGACGCCGTCGTTGTTTCTCTTCTGTCGCCACGTAGGGATTGTCGGAC
CTCCGCAAACAGTACCGACGTGCCTCGCTTGACTTTTACGACGACGTCGTCCACCCAGGA
CCCGTCTGTCGTCGGGTACACTCCTCCTTCCCTGTCGACGACATCCATGGCGGACACTGT
TGAGTAAAAGATGATTTTTAATTAAACTAATCCACGGATAAATCACAAGCATGACATTCA
TAGTAACATAGAGATGTTGCATTTTTTTTCATGCAAGCACATAGTACGCTAACAATAGAT
ACATCTATGTATAATGCTAGTAGTGCTACAACAAAAAATAACAGGAGCGGAATAAGCGTG
TTATACCATTCAATAGGCGAGTTGACCATAGCCGCAGCAGCCTCCTCATCGCCTTTCGTC
GGCTTCAAGCTTCTCGACGGTCACACGGTCGGCGTCGGTTGGTGGAGACATGGTGATGAC
GAAGGCGATGTAGACGTAGAGGAAGCAGTCGAACGAAGGCGAGCACTCATGTAGCCGCTC
CTCAAGAATCCAATTGCCCCTCACCCATATAGGATCCGAAGAGGCAGGGTTTCAGAGGCC
CGTTCTCCCGTAAACCGTGTAGCGGTAGCAAAAGGAATGAAAGGGGCAGTTCGCGTGGAG
CAGATGTGAGTTGCTCATTGCGGCTAGGTTGGTCGAGACCTCACATATATATGCATGTAT
GAGTGGAGGGAAGTGGGCTAGACCCACGTCCGAGTCGACAATAACCCACGATCCAATGTC
TCATAACGTGGCACCTCTGTTACGAACTCTCCGTTCCTGACCGGCAAAAATAAGCGCATA
GATATGAGCTCGGTTCGGCTCAATCTCGCAACCCGCGACACGTCATGACTAGGCAAGGAG
GTGGGTGGCGGAGGAGGAGTGCGCGAGGGCCTCTTCTCTTCTCAAGCTTCAATAACACGT
GGAAGGGAATCCCTTAGAAGGAGGTCCAACTCCTTCTCCACTAGCGGGGTGGGACTAAAA
TTCCGACCACTCCTTGTCATGGCACCTACATGGGCCCTTAGAGATTTTCAGTAATTGTTG
GATAGGCCTAAAGCCCACCCCATATTTCAATTATACCCCACCAGATCTCGAGGACCCATT
ATGTCCTCTGTTCCAATCAGTGTTTGATATACCGGTATTTCAGTGAAGACCTGTTAATGT
TGAGTTTTACCCAGAGCACGTAGTTACACTCCTTCAGAATTGAACAATAGACTATGCCTT
GAATTGTCAATTTGACGTAAAGAAATTTCACTAGATGTCTTACTAGTACTAGGCTTATTC
ATGAGCTTACTAGAGTGCTTACATATCAACTTTAGAAGACATTAAGACATTAGTCATCGT
ATCATACAATATCCGAGAGTATTGCATCTCCAACGAAGCAGGTAAGTAAAGTTACTCTCC
TCAGTTCACCACTAGCTTGTTTTTCCGAGGTCCTACTTCACGGGATCTTTGATCATATAG
GTTGGGTCACCACCATGGCAACTCATGTGGGCCTCATACCCATCTCCCTCAATGCATTAT
CTATAACAACACGCGATAGCCCTTTAGTAAAGGGATCTCACAGATTCTTAGCCGTTTGGA
TATAATCCAACTCTATCACTCTGGAGTTTCTCAACCGCCTAACATCTTTCGTTCTCATTC
TTATATGTTTGTTGGACTTCATGTTGTCCTTTGAACTCTTTAGTTTGACAATAATTGTCT
GATTATCGCAATTTAAAAGGATAGCTGGAACTAGCTTCTCAACTACTGGCAAGTCCATCA
AAAGATCTCAAAGAAATTCTGCTTCGACACCACATATGTCTAATGCTGTTAATTCCACTT
CTGTTGTTGACGTCCTTAGGATCATTTGCTTGCAAGACTTCTAAGAAACAACACCACCTC
CAAGGGTAAACATATATACACAGTAGTGGCCTTCATCTCATTAGCATCAGAGATCCAGTT
CGCATCACTATAGCCTTCAAGTACCGTCAGGTATCCGGTATAGTGAATTTGATGGTTCAT
AGTACCTTTCAGATAGCACATAATTCTTTGGACAACATGGCAATGTACATCACCAGGATT
GGTAAAAAACTGGCTCAATTTGCTCACATCAAATGCGATGCCAAGCCTCATTGCGCTTAC
TATATACATTAGTGAACCAATAGTTTGAGAGTGTCTCGATTGATCTTTAGCGGTGCCTTT
GAACTTTTGAATTAGCACACTAGGATCATATGGCGTTTTAGAAATTTTGCAGTCTGATTA
TACAAAACGATTCAAAATCTTCTCAACATAATGGGATTGTAGAAGTGTAATCCCACCCTC
ATCATCTCTCAATAGCTTGATGTTCAAGATAACATCAGCCACCCCAAGGTCTTTCATGTC
AAAGTTCAGAGACAAGAATGACTTAACCTCCTCAATCACTTTGAGGTTGGTTCCAAATAT
TAGTATGTCATCAACATACAAGAAGACTATAACTCCTTCGCCCCCACCTTGGCGATAGTA
TACACATCTATCATCTTCATTAACAACAAAGCCAACAGATGCAAAGTTGTATTAAACTTC
TCATGAAATTACTTAGGTGCTTGTCTCAAGACATATAAAGATTTCTGCAAATTACACCTT
TCCTTACTGACCATCTATAACAAAGCCATCTGGATGTTGCATGTAGATTTCCTCATCTAG
ATCTCCATAGAGGAAAGTCATCTTAACATCAATCATGTGGACGAGAAGACCATGCGAGGC
TGCCAACGAGAGTAGTACTCGAATGGTGGTCAGTCTAGCCACATGTGAATAAGTGTCAAC
GAAATCGTCTTCTTCTTTCTAGGCATAACCCTAGGCCACAAGCCTAGCCTTGTACTTTTT
AGCTTTACCATTGGGCCTAAGCTTGTTTTTGAACACTGATATATCTCCAACATATCTATN
NNNNNNNNNNNNNNNNNGCTATAATATTATCATTCTAGGACACCTTTTGGGTGTTTATAT
ACAAATAAATATTATTTATGAGCACTAACCTATTAACCTAGTGCCCAGTGCCAGTTCATG
TTTTCTGCATGATTCTGGCTTTCCAGGTTTACAGTACCAAACAAAGTCCAATTGCCCCAA
AACTTTNNNNNNNNNNNNNNNNNACCAAAAGAAGACATGGAAGCTTCAAGAGGAGACCAG
AGGCCACACGACGGAGGCACCCCATATGAGGGTGCGCCCAGGGGGTGGTCGCACCCTGAT
GTGTGGTGGGACCACTAGCACCTCCTGACATCCATCTTCGTCCTATAAACTCCAATACAT
CCCCAAAACCCTACAGAGCCACCAGAAACACTTTTTCCATCGCTGCAAGTCTCTTTTATG
TCGTGTTCCCATCTAGATCCCTTTTCAAGTGCCCTGCCGGACGAGGGATCGATCACGAAG
GACCTATACATCATCCTTGACGCTCCCATGGTGATGTCTGAGTAGTTTACGACAGACCTA
CGGGTCTGTAGTTAGTACCTAGATGGCTGTCTCTGTAACATCCAAGATAGAATACTACCC
TTATTTGGGGTCGAAGGCTTAATAGGGATAGAAGCACATCTCGGCGTTTCGCTAGTATAG
ACATCATTGCAAATACATTTAAAAGAGGAGATGAGTATATGAGTTGGCTTACACTCGCAC
ATGCTAAATTACAAATCTACACAATCATCCATTCAAACATTCATAAGAGCAGGGTCCGAC
TATCGAAGAAATCAAACGATAAAACAAGGAAGTCTATCACGCTAAGCCCAGGAGATGACC
AAGAATCCCTTTACCCATCCTGATAGGTGACGTACATACGCCGTCTCTCCTCATCATACT
CCCACTGGAGCTATGGAGCATCAATTGCATCAACATCTGCTATACCTGGACCTATTGTGT
TCTAGTAATGAGCGAGCCACGGGGATTCAACAATCTCATTGACTAAGATATCAACACTAA
TCAAGTTATTAGGTGAGGGATGGTTAAGTGGTGAGGTTGCAGCATCACTAAGCATTTATT
TGGTGGCTAACTTACGAGTACATGAGTAAGATGAGAATATATGCAATTCGATCGATTACT
AATTATGATCAAGAGGTGATCATGAACACCTACTTATGTCAAAAATAACCCCATCGTGTT
CTCCTTCCGAACTCCCTCAAAAATACACGGTCAAGGTTACTCACACAGATGGTGTATCTT
AATTGAGGTTACTTCGACTTTTCTATAACCGGATGTAAAAAAAATTCCAATTTGCCACAT
AATCGCGGGCACGACTTTTGCAAAGATTTAGCGATGCACGGGTGCTCCATGACTTCCATC
ACTAACTAGCCACAAGCTGCTCTATATCACTTCAAACTAGACATAGACCAAGTGATACGT
CTCAAACGTATTGAATTTTCAAAATACTTTTGCTATTGTTTTGGCCTCATTCTTGCATGA
TTTGAATAAAACTAACCCGGTCTGACGTTGTTTTCAGCACAACTGCATGTATGGTTTTCT
TGTGTGCAGGAAAATGGATTTTTAAGCTTCCCGGAAAATTCCAATAAAAAATATAGAAAA
TCCAAGAACCAGAAGGAACCTCGGGCCAGAAGATGGGCCAGAGGGGAGCCACAGGGCCTC
CAGGCGACCTGTGGGCACGGCCTGCCCCCTGGACGCGC