Map Locations of contig_58200 (8027 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_58200

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70582 1 522 bp MLOC_70582.1 Available Available None





CDS Structure of MLOC_70582






Contig Sequence (8027 bp)

>contig_58200 8027 assembly3_WGSMorex_rbca.fasta
TTTATATATTCCACAAAAAATCTTCATAAATTTCCAGGTCATTCCGAGNNNNNNNNTTTT
TGCGCAAAAACAACACCATGGCGATTCTGCTGAAAGCAACGTTAGTCAGGGTTAGTTCCA
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTTCGGAAAAGTGGATACG
ACGGGGACGTATCAGGGCGCAACGGAGAGCACCCCTGGCGAGGTGATAGCTCTTTGTCGG
GGCCTGTCGCTCCCAAGGAGGTCCAGCGCCGCCTTGACCGCCTGCAGGGCGGCAACATAC
TTGCCGGCGACCCATGAAGCTCGGATGTTGGGGGCTCCCGGCAACCTTCCCTCTATGCAA
GTCTTGTCGGCAGGACATATGAACCTTCGCGCGGAGACGAGCAATCTTGTGCTCAACATA
AGTGAAAAGTTAAGTGTTCCACAGTTTTTACCGATCTTCTTATATGGTGGTATGCATAGA
TATGTGTTATGCTTACCTTCGGCAAGGATTGACGCATAAGTTTCCGAGACTTGCCGCGAG
GGGAACTTGGCGTAGTTGGGCGCGCCCTTGCGTTGTTTCGAGCCCTTCTCAGCCATGAAT
TCCAATGACGTTCCATCTGCATGGCCCTCCCCTAACAAAGAAGTTAGCACCGGCAGAGAT
GGTGCTGGAGCAGCACCCCGTCTCCCCCGTCCACAACCACCGCAACGACCGCGGCCCCTC
GCCCCTCCTCCGCCTCAGGCGCTCGAGCCACCTTCCGCACCTGCGGCTGAAGAAGTGACA
TGATAAGAGCGAGTCCCCCAGGTTGTTGAGGCAGAGAGCGGGGGCCGCCCTCTTCCCCTC
TCCATCATCGAGGGCCAGAACTACGCAACCAGATATGGAGATGGAAGTTGGACGGAAATG
CTCTGGGAAGAAGGATGCGCGTCACCCCCTACAACCCCCAGATTTATAGGGCGGGATGCG
GGGGATGGCCCTTCCACACTTCCAAGAACCACCGCCCACTCCCACCAATCTGCTCGCCCA
CGATCACGGGCGAGCAGGCTGCTGCCCCACTCCTCCAATCAGGGGTGCGGCGTTCGTCAG
AAGCTTTAAGGCCAGGGCGCCGCGTGCCTAGCCACAGTTGTGCATGCAGCACATGTGGCG
AAAATGGTCAATCGTGGTAGGCCCGCCCCTTGTGCGGGTTATTCGGCCACCCCGCGAACA
ACTCCCACTACGCGCATTCAAGAGCGCGCAACAGAAAAATTAGCAAGTGAGGTTGAAACC
CTAACTAGTCCTCGAGTCTCGGTCGCGCGTGCCCGTGCACTGTTTGGATCTAGCCCAACA
ACGCCTCGCGCACGTGTATGGCCCACGCCCGGGGGCTCCTGTCGGTGCACTAAAGAATGG
GTCCATTAGTACCCCTCACTTGTGCACGGGCAGTGATAGCCCTCGGCGGGCCTCGCCAGG
GACCACGAGAGGCAGAGGCGAACCCCACAAGAGCCTCTTAGGGTGACAACAAGGTGCCAA
CCCCGGCAAGCCCCTTTTGCCGGGGGAGGCTGGCAAAGGACCAGCAGATCCAGAACGGGG
GCTACCAGAGCCCCCGGCAAGATGATCCTGACAAGAGCACCCTCCTAGAAGCTCACGCCA
AGATACCTTGAAGGCCCCTGAAGCCTCAAGACCGAGGACCAGAAGCAAGGCCCCGGCAAG
TCCCTTTGCCGGGAGGAAAGCAACAGGACCCCGGCAAGCTCCTTGTCGGGAGAGATACCA
ACGCTCCAACGAACAACAAGCCCGGCAGGGTCCCGAAGCACAGCATGCGAGCGCAACAGC
CAGCTGCCCCCTAGCCACTTGATACGTGTCGTTTTAATTGATGCGTGTCAAGCATAATCT
GGGGAGCGCAGTGCCGATGGGACGCACGCTTGTCCCATGTCTGGGGCACCTGACGAAGCC
ATTAATGTGTGTGCTAAGACGCGAGAACCGATGTAGCTTACTATACAACTTGTGGGTGCA
TTGTGCACCTCGTGAAAACCCCATGATGCCCTTGTAGGAGTCCCCTTCCACCTATAAAAG
GAGGCCCTGGGCGTGCATTTGGGGAGATTAGCCAGTTGGACGATTAACGCTGAGCAATTG
ATAACCTTTATACTATTTACACGAAGCAGGGGTAGGGTTTTACGCCCCCAAGCGACCCGA
ACCTGGGTAAAAACGATTGTGCCCGATCATTAGGTCTGCCCTTCGTGCATCCTTCTCCCC
CGCTGAACCGTAAGGAGCCCGTAGGCTCCATAGGTGCTCGTGTTGTTCCACGACAGATGG
TAATGGAGGCATTTGGGCCATGGTGCTACGTGCCACACGTATGGGCGTTAGCTTTTCTGA
AATCTTTTTAAATCTTAGCCGTCAATTTTATATTTAGGGTCGCGATAATGCCTAGACGTG
TGGGCGTTAAGGGGTCTTTCCACACTTCTCGTATGGTATCTAAGAAAATCAGCCCACACG
CCTACGTGTGGCCAAACAGGTAATGCCCACACGTCTCGCCTCGTGTCTCACGTCACCGCT
TGCATGCATGGAGGAATCTTTTTGGATTTTGAGTTTTTAAAATGTTTTATGTCTTAAATG
AAAAATCCGATTGAAGATCCATTTTCATCATTAAATCCATCACGACGAGAACTTCGAAAC
TATATCTCATATCAATATGTTTCGATGATTTTTTTTGAGTTAAAATTTGCGATGTCTATT
GCACATGCATTGCATGGTGTTTACATTGAAGTTGCCATGATATGTTTCAACTATTTTTTT
CTTCTACCTTTAATACTAAATTTTGACATAGTATAAAACGCGGAATTAAAAAACTAGACT
TGTCATGAACCATAAACTAAAATTGCCATGGTGAAAAAATTGCCGTAAAAAATAGTTGAA
AAATATAGCGGTAGCTTTAAATCTAGAAGAAAACATAGGTAGAACATGTCATGGCAATTT
TAGTGAAAACACTATGGCAACTACACGGTAAACATCATTTCGACTTTTGGTCAAAAAAAA
TTCATCGTGGTCAAAATTCTAAAATTGCCATGATCTATAAACTAAATGTCATGATGGATT
ACTAAAAATTGCCATGATCCATGCATTAAATTTATCATGGTTAATTACTAAAAATTACCA
TGTTCAATTAATAAAAATTGCCGTAAAAAGTAATTGAAAAAATAACGATAGTATTAAATC
TAGAAGAAAAAATAGATAGAACATGTCATGGCAACTGTAGTGTAACATCATGGCAACTTT
TGTCCAAAAGAAATTTCGTGAAAACATATCAATATTGGATTTAGTTTTGAAGATCTCGTC
AAGACGGATTTAATGGTAAAAGCGTATTTTTAATTGTATGTTTTAATTAGAAAATAAAAT
ATTTTTAAACCGAAAATCAAAAAAGATTCGTGTTGAGGGAGAAACGGGCGTGCGGGCAAA
GTGGTTAAATGACCACACATAGCATAGTCCTACGTGATAAAAAAAATTCAGATATCAGTT
GCCAAGATTCGTGCAACAGCAAACGAACGGTAATCCATGTGTATTGGCTATTTGAAAACG
CCCATATGTGTGGGTGTTATCTTTTGGCTATATTTAACATAAAATCAATGTATATAAATG
AATGACTTATGAAGAAATATGAAAGCTTCCTCCCTTTAATATTTAATACTCGTATTAGGT
AAAGATAAATTACACCACACATGCATTCAAATCGTATCACTTTTCCTCAGGTTGTTCGAA
CTTACGTTAACAAATAACATGATGAAAGTCAAGACATGTATTCTCGTAACTGAAACTCCA
TAGGGAGTAAAATTATATATTCCAATTGTTATGGAACTGACAAACTGAGACAATTGTGAA
CGCCAATAAAAGCACACAACAAATAGTATCTACTCTTTGCAGATTCATCCACCAGTTTTA
TGCGTCACAATGCAACTTATCAGTGAGGAAAGACTTGTCCAATAATGCCGCGTCACCTGC
CCAAAGGCCGAAGGCAGGACCAAGCTAATTCAAACTATACACCTAAACTGAAAAATTCAG
TGGAGCTAAACATGGGGTTTTGTGGCTTCTTCCGACAAGACATTTTGCTTGCTTAATGAG
GTCATAGCTAGACAACACTAAAGTCTTTTGAGGATTACAATAACGGAACTCTAATTTCCA
AGGCGGTTATGCGCTTCTTTCAGCTTCCAAATGCTGCATTATCAATCATGTAAACTCCAC
ATCAGCTGGTGCTGCTACTGCAAGCTTCTTGCTACTTTAACTCTTGTCGTCAGTCTTCTT
CCCTCCTTCAGTGACTTTGCCAGATGACGATTTTGACCCTGATGCGGAATCAGGCTCATC
ATCCTCAACAATAACCTGCACAGGACGCTTGCGACCACGATGCATATGACGTTCACAATA
TTTCTCATTGGGGATAGTTTTTCTCCAGCACCGCCACTTTTTTCCATCGGTTCGACGGCA
CCTTCCTGGTTCTGGTTCCAGGCTCTTCCCGAAGTCCAAGCAGAGAGTTGCCAATCCCAT
CACTGCCCAGTCCAGCAATACAAATCAGTTAGAAAGCCTCAAATAGCTCTGAAAAATACA
TGAATCATAAATGTCCAACTTTTCAGGGGTTTCTTCATCATTCCCTTCATTTCAACAGCT
ATTGCATGTCGTTGGAGCTTTTTATTTGCTATAAAACGGACCAGATATAACATCCGAGGA
CCTCACTGCACTACCCTAGATACTGCAATCAACTAGCATGAATATTTTCTGATATTTTCT
GATATCTACCAAATATTCAACAAATTCTGACATCAAGGAACATATCAACGATGACACAGA
TTACAAGGGCATACGTGTAGGGTAATTCTGGGCGCCTTCAGAGGATGCACCGGTAACACT
CTTCCAGATGGGGAAGACGAGATGGGTAGGTACGGGCACACGGGCAGCCATATACTGGTA
TACCCGAGATTGCTGCTCTAGCTCCTGCAGCTGCATCGCAGTAAATGATGCCCCAGCACC
TTCAGGGACAGACGCCAAAAGCACTCTCATTTCTTCCTGAAGTGCTGCAGTTGCTACCGC
TGCTAACCAAACAAATACAAACAAATCAATGCGCTCAATTAAGTATTATGTGCAGTACAT
AAATACACTCGACACTAGCATAGCTCGGCCTAGTACATAAGAACAACAATCAGAGCTAGG
CAATAGTAAACCCTCTAATGTTTTGTGCATCATCAGTATTAAGGAAAGCTAGCATAACAA
TGAATAAATCAGATTTGCCATGCTTAAAAAATCTGACTGTCAGAATTGTAGCGAAATCCC
GAAAACATACAGTTTCCTGCTAAATTGTAATTCAATGTACAATGCAAAGTTGTTAAGAAC
GAATGTAAGCAAAAAAATAAAAAAGGCATGCCTATAAACTAGAATCTGACTAACAAGAAG
CCCCCCAAGCTTTATTCGTTTCTGCCTTCTTAGCAATATATATCGTGGGAAAATTGAGTC
CTTACAACAAAGCATCCTTTGTATCGTTAATTGCCAAGTACGAGTAAAGTTAGCAACGTC
CAAAACCATCTATACTGTTTCTTCTGCAACTATTCCTATGCAAAAACACCATAGAACTTC
TATTGTATTATTGCAGCTTGCAGTTGAACACTACCAACAGTCAGCTAATAGAGTCAAATA
ATAGCACAGAAAAGTTTCTTGCGTGATTAACAATGGACGGAACAAGTTCTTGCATGCGAC
CGCCAGAGAAGTACAGGTACCTTCCTCTGGATCCTCGACCAGGACATGGTCCTCTACCAG
GACCAGATCTTTACACCCGCTATCTTCCTTCCTAGCGTCGTCGCCGTTCCCCTCTCGATC
TGCACTCTCCTCCGCCTCGCCCACCAATTCTTGACCGGGTTCTTGCCCTACCGCCTGCAG
AATCGCCTCCTCCGCCGCTTCCAGGGTGTTCTCGACACCGCCACCGGCCCCCCCAACGGA
ATCAGTATCATTCTTGTCCTCCCCCTCCGCCGCCATGGTAGCGGAAGGGCCTCGCAAGAG
AAGACGACAAAAAGGTATCTTTGGGATTGGATCGGAGGGGGAAGGGAAAGGCCGGCGATA
CGGAGCTCTCGCTATGAGGGTGAAGGACGAGAGGGGCATACAACTCGGGGAAAAGATGGA
GTAATGGTGTTATCGGGGAACTCCCATATAAAAGAAAAAAGCACTTGGGTGAACCCCCTC
CCCCTTCCAGAAAAAACTTGTGGAACCCAAAGTTCTTTTTTAAGAAGAAACCATATATTT
ATTTATTCATAAAAATAGCAACATACAACATATATGGCTTCTGTCTGAAACCGTCCGAAG
AGACAACACAAAAAAATTTACATCACCATCGTCAAAGAATCTAGCCGTCGTCGACACCGA
AGCGTTCGTCGGAAGAAAGAAACATAGGCCTCTAACTTGTCAAGATCCAAGATAGTGCCA
TAGCAGCCAAGCTGCGTGATGAACCTCTCAACAGGCGTCATCACAAATGGCAACGCACAT
GTCGATGTGGATCGTCGGCCGAAGAAATACTTCACACATCTTGGATCGCGGTCTTGAAGG
TCTCGACTGATATAACCGTCGAACATCAAAACCGGCAACCATCTTCCACCTCCAAATCTT
TATGTGGACTATCCCTTGGATAAGACCGGCATTGCAACAGCGGCCAACTCCAAGACACAA
ACTTCCGGCTCCACGACGACGCTGGAGACGCAGCCAACGTAACGCGGACGAAGCCGAAGA
AACAAGAACCTGAGCAAGATCTACACCGACGTATTGAGGAACTCGCTCGAACACAAATCC
ATGGCTCCTCGACGTCGCAGAAGAACGTCGTCGAGTCGGTGGCCTAGAAAACTTTATTCG
CGATGACGATGTCAGCACCGACCGAGCGCACACACCCAATATACCTATTTATCCTATCTA
CAGACCGGGCGGAAGGAACCAGGCTCCCCCAATCTCTCCCTGCCGCCGGAGTGACGAGTG
GAAGGAAGGGGAGCCAACGTTCTCGCTCGCGAGAAGGCATGAACCCCCCGTGAGATCGCC
TCTCTCTTGGGCACTTAGAGATAACGGGAGGACGGGCTGATCGATCAAAAAGCATGGAAC
CCAAAGTTGTTATGTGGTTACGTGCATCTGAGAGCAACTCCAACCGCGCGATTCAAATGG
ACGCACATTTTGCTCATTTTTTATCCGTTTGGATCGGCGTATCCGCCTTCTTTTATAAAT
GGATCGGTCGTGCGCTCAACAAGGGGACCCAAATCTTGCCCTCGCGACCGGCCGTCATCC
ATTTTTTATCACACATTATTTTTGTTTGGGATTTGCACGTTATTTTTATTTCATCAAATG
CATTCCTACTAATTGGAACAAAAAACCACAATTAGACATTTTAAAAGATGTCCAACTTAT
GTAACTATTCATACTAATTAGACTAATATCTTCTCTATGTCTTCATTGTTGATTTGCGGA
TTCTTGAACTTAACAACGTCATTTTTCTTCGATTCTAAAGAAGTAGATGTTGCTTCCCCG
TCGGTCTCTTCTTTTCTCTTATCTACACCTTTAATTCTAGCTAGAAGTGCACAAATATCT
AGCTGTCACACCTTGTGTTTAGCTTTCCTAACTAATTAACTTATCTTAAAAATTGGGACC
AATTTAAAAATTTTGTGAATGCTTATGATGCTTGAAGTGATTGTTGTTTGCTTGCTTGCT
GGTATGCTTGTGTTGGTTCTCAATAATTCTTGCTATTCTCCAAACTCACCTCCTTAGCCC
AAAACTCNNNNNNNNNNNNNNNNNNATGTGTTTAGGACCAAAAACTATTTTTACCAAATA
CTATTAACCCCTCAAATGAGGTTTGTATTACAAGTCCTCAAATTGGGGAATTTATTTTTG
CACCATTTATTTTATTTAAAATATATTATCAAAATGTCTTCCAAAAAACCACAATATTAT
TATTTTNNNNNNNNNNNNNNNNNNNTATTTAAATGCCTTTCTGTGAGGCCAAAAATGGTC
TTTTATGAAGGAACATTATTTTTATTGCTTTCAAAATATTTGAGAAA