Map Locations of contig_58161 (7842 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_58161

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70557 1 1229 bp MLOC_70557.1 Available Available LOC_Os02g41840.1, FRAME:+2, EVALUE:8e-48, 13102.m04621 protein DUF584 domain containing protein, putative, expressed





CDS Structure of MLOC_70557






Contig Sequence (7842 bp)

>contig_58161 7842 assembly3_WGSMorex_rbca.fasta
AAGAATAGGGGTAGGAGGCCTGCAGGGGACCCACAAGACACCCCCCTAGGGCGCGCCCTG
CAGGCTTCTTGTCTCCCGACAGGTCTCCTGCCCCCTTCTTCAAGTTTGGCAGGTTTCTTT
TGGTCCAACCAAAATCATTAAGAAAATTTTATTCCGTTTGGACTCCGTTTAATATTCTTT
ATCTGCAATACTCAAAAACATGGAAAAAACAGAAATTGACACTAGGCTCTAGGTTAATAN
NTTAGTCCCAAAAATAATATAAAAAGGCATATTAATGCATATAAAACATCCAAAACAGAT
AATATAATAAAATGGAACAATAAAAAATTATAGATATGTTGGAGACGTATCAAGGTGGCG
CGCTGATCCACTCGCGCACCACCCGTCCCAGACATATTACTCGGGCTTGAGGGCTAGCCG
CCCTGGCTCGACATTGGCGGGTGACGGCGGGGCACCGACGGCATGACGCAGTCGCAGACA
GCGGAGAGCGCCATAGCCTCTGTCATCTGCGTCTGGTAAGCCGCACCCTCCTCCTCCTCC
TTGAGGCGCGCTACCTCCATTCTTGCATGCACTACGGCCGCTAGCGCATATTGGTACGCG
GCCTTTGCCTCCTGGTCCTCTTCACGCACGATAAGGGGCGGCAACGGTCCAGCCAGCACG
TCGCGGACGTCACGCCAACGCTGCTCCTCGTGCTCCGACGCAATGCAGGCCTCCCATTCA
GGGTCTGCAACGTACACTGGCTTGCGCTGTTGTTCTGGCATCAACTGTTGCCGCTAGCGC
CTCACCTCCATCGCATGCGCCTGCGCCGACCGCGGCACCGCTGGCATTGAGATCCTCTTC
GGATCCAAATGTCAGTCGTGCAGCAACGTGACATCAGGATAAGGGAGGGAGATGTTGTGC
TCCCAATGCCACCTCGCCTGGTGCACTGTTATGCTGATCCACGGCGAAGGAGGACGAAAA
GACGCTAGCAAGGGTAGCGCGCAGACAGGGACGGTGGGGGACTTGCCCTTGTCTTTGCGA
GAGCTCGAGCCGGAGAAGAAACCCATCATGGTGGCTAGGGTTTGTCGCAAGCGGGGAGGA
GGGGAGAGGGCAGCAGGTGGCTAGATGGAAATAACTTTTGGAATAGGATAAGGCCGACCC
TCCGAAAGCTTGGATTAGAAAAGGACGCCTAGGGTCGCTGGCGCATGTTAGTAAAGACGT
CGACCGGACGCCACATATGGATGGGTGCAGACACGAGAGGCCGCGTGCCGTGCCGCTACA
CGTCCGTGTTAACGCATTTCAGTATTAAATTGAAACCTAGAATGGGTTCGTGCGAACGGG
GAGCGGACACGTTTTAAAAATGAATCGTCACACCTTTATTTTTATCCGTAACGATTCAAA
CAAACTGTGACGGAGAATGGATCGTTCAGTTAAAGTAGTTCTAAGATATATGGATGTGAC
GAGGAAATTTGGGGATTGTCCCGTCCCTCCGGATTTGGCAACCGCGCGCGGGCTGTAGAT
GCTCTAACCCGATGACACCATCGCAACCTCGAGTGCATGGACCAGCGCATAGCTCTCGTC
TCTAGCCTGGCACGCCTGTCGACCCGCCAATGCCAGCCACTTAACCGTTGAAACGCCGGT
ATCATATTCAGTCTCTTTGGCAAAAGCATGGCAACACCGCACGCATGGCTCCAAAGTCCA
AGCGCATGCAGGACATACGACACTGTCCGTGTTAATCCTCGTGCACCCTACGACGCGTAC
ACGAGCGGGTCGCCCATGTGGCCGAGCGGGCCCTACCCACTCCTGAGGCGACACGTACGC
CCGGATCCGCGTGGCGACTGGGTCTACGGCTCTGGTCGCATGCATCCGCTCTCCTCGATC
ATCATGCATGCATGCAGGCAGGCAGGGGCCAAAGTTGCCAACAGATAACTATCCGGCACG
TACGTGCGTGCGCGGCATCGATTGACGCTCTGATCCATGGAGTTTGGGACCCATGCATGG
CCTGCCTGGAGCATCAATTATGGCCGACATTCATGAGCTAGCGAGCCTTAAATTTGTCGC
GGAGAAAAGCCGGTGTAGTCCTCGATCCATATTCGACACGACGTTCGTCGTGTGATCTAG
ACACAAGTACGTCTATGTACAACTCGCCCCAGCCAAAAGCAATTCTACGGATATCGCTGA
CACAGCGGATGTTACCGACACGTATACTTCTATAGAGATGTCAAACATGACGAGATAATC
CAACATCTGTGACTAAGCCAACTTCCATATGGAGAATAAACAAACTCAACTCCCTGGGGA
CCGGATTAGAGAACAAATTGCCAACAAATTCGATCTACTTCCTTCATTTTTAAATATGAT
TTTTTTTTAAAAATTTCATTAGAAGACCACGTACAAATGCATATAGACATATTGTAAATT
AGATTCACTCATTTTCTGTCGTATGTAGTCTTCTACGATAGTAAATTTTTACAAACATAT
ATATTTAAAAACGAAGGGAGTAGTATTATTCCAGTATTAGTTTCGGGGCGCGCTTCGGAT
AAGACTTTCTCATCATGTAGGACTGAATTGCTGACTTCCTTATCCACAAAGAAAATGTAC
CTAAAAAATATCCACAATGAAAATCACTAGGTCGACTACGTTAGCAGGTGCCAATAGCAA
CGCGCCAGCACCACCCGAAATCCTGTTAACCACACAAAACACCTACGTACGTGGCGGTTT
GACACCGCGAAGAGGTGCGGGGCCCGGCCGGCAGCGGTTCGGCGCAGATATCATCCACGT
AGCAATCCCAAACGTCAAGGGTAAAACAGTCATTCTATAAAACGGCCTTATCCACATCCT
CCGCTTTCTGCTCTCGTCCTTCCGGCTCATATAAATCCCAGCCTAACCACCAGCGCACAC
CTTCCTTCCTACCTTCTGCCCGCCCGCGGTTTCACAGGTCTTCAACCTTCTCGCCTCCTT
GCGCGATCTGCTTCACGTTTTTCCCCTCGCCGCTCCACGCGCGCGGTACGTTTGCACGGA
GAGCAGGCACGGCACGGCCGCAATGGCGAGGAGCACGCGGTCGGTGGCGACAGAGCGCGC
CTACAACCACTTTGCGCCGTCGTCCACGCGCGGCCTCATGGTCATGGGGTACCCGGCCAC
GGCAAGGGGCCCCGTCACGGCCGACGAGTTCGACGAGTCAGACATCTGGGGGTCGTTCAA
CCCGGCAGAGGAGGCCGAACAACTGGCAAGGTCGGGCGCCGAGCTACCCCGGGTCCGTGC
AGTCCCGTCTGCCCGTCCCGGGAGGAAGGCGAAGCCGGTGGACAGGACCGGCGGGGGCGG
CGCCGCGCACGGGTCGCTGCCCGTGGCCATACCGGACTGGTCCAAGATCCTTGGGGATGA
GTACCATGGGCGCCAGGCCGGGGACTGGGAGCTGGACGACGCGGACGACGAGGACATCGA
GGGCGCCCCGGTGGTGCCGCCGCACGAGCTGGCGTGGCGGCGCCGGGCCGCATCGCTGTC
GGTGAACGACGGGATGGGGGTCGGCAGGATGCTCAAGGTCAGGGACGCGGTCTGGAAGAA
GACGGGGTTCCAGGCCTGACGCGCTCGGGCCCGGCCTCGTCGCCACTACTACTCGTAGCT
GTTTTCTTTTGACATGTCGATTCGGAATTTCGGATAAAGCTAGCTACTAGCTTGTAGAAG
TTGGTTGTTTTGACCGAGTTTTGGGCTCCGGGGTAGAGAGAGGAGTGGATGCTGATGAGA
TGAGTGAATATTGATCATTGTTCGTCCCTGCTGTGCAGTGTTTTCCCGAGAGAACGCCGA
ACGTTTTCTGATACTGCGTAATTCTTTTGTGTAGCACGCAATGGATAGAGCACCTACTGC
TAACTGTGCTTACCGCAGCAAAATGATTTGTTGAGAAGATGATCAGTCAGGCAAAATGGA
TAAATTTGACATATTGATGTAACTAATTCATAAAATGAACTCTAGCAAAAGAAATTCACA
CTCTAACATTTTTGTGTGGCGTCCCACACAAAGACGCCATACTACACTCTGTGGCGCCTT
AGCATGAGGTGCCGCACCTTCGATCATGCTGGCACCCACTCACGGCCGATCCCCCCCCCC
TCATGCAGGGTGGCGTCTAAGGCAAAGGCGCCACACTTGCAATGTGTACCGACTTGTTCT
TAGGCGCCACACCTTGAATGATACAGCCGCGGGCCGGCCCTCCCCCATCCCCACCCCCAC
ACATCTGAAGAACATTAGCTCCGTGCCCCTAGTTCCCTTTTCCTCCCTTCTCAAATTTCT
CTCCAAATCAAGCAGACATGAAGGTTTGGTCCGAGGATTTCGACCCCAATCCCTTCTTTA
AGGTAATCTCCCCCGATCCCCTTCCTCTCATCCAAAAAAATGCTCACATTTTTACAAGTT
TGAGAAAACCCTGGTTCTTCATGAATTTTGGGTGTGTAGCTTTTGTTGCACTTTGCTAGG
ATTAGTCTTGTTTGTATGTAATGGTTATGGGTGTTGGTATGTTAGGATTAGGGTTCTTTG
TATGTAAGGCTTAGGGTTATGATGGGGTTAGGTTTGTTCAATATATATGTTAGGAGTAAG
GCTTTTTTTTTATTATGTGAATGTTGTAATATTTGGATGAGTGCTTATAGAATATATTCT
ATTTTGTGTTGTTCCAATTTTGTAGGGATGGGAAGAACATGTGTTTATCTTCATCACATG
GACAAGTATGCCTTTTGAAAGGCAATATTGACCCGGACCCAAATGAGCTAGACATGGTGT
TTGAGTGTAGTCCTCGATATGCCGAGTTGTTGGAACAAGTGCGAAAAGATTTGAATTGGA
TGGACCCAAGTGATGTTATTGAGTTTGATGGTAAGCATCATGTGGGATTTGGAATGCACA
TTTGTTGGAAGACCATGTGTGTGAACTTCGAGCAACGTTGGGTTACATACAGGGAAACGG
TAGTTGAATCACTAGACATAGCTTTAGAGTTATTTGCCATAAAAAAGGTTGATGCTAACT
TGCACTTGGATTTGAACCGGGTTGCCTCTGTGATTGTTGATAGTAGTCCTCCACGCATGA
ACCAAGCTGACATGATTAAGCCTATTTTGACCCAACAGGTGCGGCCAACATTGACCTCGA
TTTCGAATATCCAAGAGGATAATAATGAGCATGGGGATGATGAGAATGATGATGATGTTC
TCCATGACAACAATGTTAGTGATTTGGACAAATACTATTTGCAAGAGACCATGGACCATT
CCATTGCGTACTTCCGTGGCTATGTGTCGGAGTCGGATGATGACGGTCCCGATGAAGAAG
TTAATGAGGAAGGGTTCGCAGCCAAGAAGGTCGAAGCTTTCAAGAAGGTATTACGGCGGG
ATTGCAGGACACCATTGTTCGAGGATCTTAGTATTGCGGATGAAGCCATGATTGACGACG
GCAAAGGCATATTGCTTGGAGTTAGGTCAACTTCTCGTCGGGATGAACATGGGAAGAACG
GTATTTTTCCCGGGTCAAAGTTTTAAACATTTCTGGAATTGAAGATGTAGTTAGATGACT
TTTCGGTTACGCACTATAGTCCACGCAAAGTTGTTCATTCGAACATCAAGGTGCATTACA
CGGTTGCATGTGAGTATTTAGAATGGCCATGGATTGTGTGTGCAAGACCATGAAAGGGAG
GTCCCAGATGGCACATTGTGAGTTGTCTACCAGTTCACATGTGTCGAGGCAAGAGGGTTG
ATGGCGAGCTTGTGTCCCAAAACCATAGACAACTCACCTTTGAGTTCATCGCTTACAGGC
TTTGCAACTCCATCTCCTTACTTCCAACAATGACCATAAAGAGTGTACACAACCTCGTGA
AAGCCCTCTTTCACTACAAGGTGAAATACGAGAAGACATGGAAGGCAAAGCAAGCCACAT
TCAAGATGTTGTATGGTGATTGGGTGCAAACATACAACTCACTGCCTAGGTTTTTGGGAG
CTATGGCCGCCACTAACCCGGGCATGGTTCATGTGGTTGACCCACATGGGGAAAAACAAT
GATTCACAACGGAAGAACGGTCTGAGTCTTTGGCCGTGCATTTGGGCATTTGAGCAATGC
ATGAGGGCTTTTCAGCACTGTCGGCCGGTCATCTCCATCGTTGGCACCTTTTTGACCAGA
CAATTTAAGGGCACTCTCTTGGTTGCAATAGGAAATGATGCCAATAATCAGTTGTTGCCC
TTGGCTTTTGCTTTCGTTGAGGCGGAGACCAATGATAACTGGGAGTGGTTCTTGCGTCTT
TTGAGAACCAAGGTATAACCGTCTAATAGGGAAATTTTTGTTATATCGGAACGCCATCTA
GGAATTCTTAACGCGGTTGACATTGTCATTCCCGTACATGCTCCTTTGCACCATCGATGG
TGCATGAAGCATTTTTGTTCAAACTTCTATCGACATGTGGTAGCAAGGATTTGACGGATG
ATCTTCAAGATTGTTGTTAAGATTTTTCGACAAACATTTTGCATGATTGTACAGCGCTTT
GGTCGCAGACAAAAAACTTGATGCAGGGGGTCTTAATTTTCTCAATAGGCACATTCAACT
TAGGACAAAGTGGATACGAGCTTATGATGAAGACGACCAAAGATACGGTCAAATGACAGG
CAACATGGTAGAATGCTTCGACTGGGTGCTCAAGGGTGTCCGTGTGTTGCTCGTGAAGGC
AATAGTTCAATACACATTCAACAAGTTGAGAGCATACTTTATAAAATAATCAATTGACAT
GGATAAGAAGATTGTGGGAGAGAACAAGCAAAAGTACAAGTACGAGTTCCCATCAAAGGT
TAATAAATGAATGGAATTTCAATGACAGAAGGCTCACTCCCAAATAGCTACATTATACAA
TAATAATGAGTATTGGATGTACCAAGTGAATGATCCCGGAGGAACCACAAACGATGGCCA
CCAATACGGAAAATCGTGTGTTCAAGGTATCTTTATATGAGTGTGATTGCTCTTGTGGGA
GGCCAAGGTTGCTTCATCTCGCATGCTCGCACTTGTACACGGCAGCTCCTACTAGGAATG
TGGACGTGAACCATCCACTTATTACGATGGAGTCTGAGTTCTCTTCGTGACCACAAAGCA
TACATGGGCTCCTAGATTTGAACCATACTTTGACCAATCACAATGGCCAGAGTACCATGG
ACTTCAACTGTGGCCCGACCTGGAATGGAAGGTGGTTAAACGGGGAATAAGAAATACAAA
GCGTTTTAGGGGAGACATCGATGGATGGGGCTGTTCGAGATATGCCCTAGAGGCAATCAT
GTATGATGATATTTTCCTATGTGTTTATGAATAAAGATAGTCCTTGGACATTGTCAATGA
TGTGTATCAACAAGTACATGACTTGTTTGTGAGACTATGCATNNNNNNATGACTGTCCTA
AATGGTCCCTAATCAAAAGGGTTGTGTGGACACGCAACCATATAGATTAACATATGCCAC
GATGGATGGTTCGGTCTCACTAACCATGNNNNNNNNNATGCTAGCCGGATAATATGGACT
CACAAATATCTGGTCAGATTCGACGTAGTCGGATCCGAGTCGAGATAAGGTCTGAGTTGG
ACACACCCAACTATGAGACCCAATGATAGGCCATCTGTGAGCCTCTAGTACAACGTACGT
TCTATGTCCTACGACCTGAGCTGGCGCATGTATTCGGGATGGTTATAGACTTTCTTTAGG
CTGACCAAATGCTGCTTCGTGACTGGGTAGTTACAAAGGTAGGTCTCGGACTTGTCCAGA
CCCATACTGCGAGACATGGTCGAGCAAGATGGNNNNNNNNNNNNNNNNNNNNAGAGATAT
ACTCTGGGCCCCTCGGGTAATCCGACCTGGATAAGCATGGCC