| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_5815
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_70581 |
3 |
1266 bp |
MLOC_70581.2 |
Available |
Available |
LOC_Os07g28430.1, FRAME:-3, EVALUE:1e-94, 13107.m02846 protein growth regulating factor protein, putative, expressed |
| MLOC_70551 |
1 |
645 bp |
MLOC_70551.1 |
Available |
Available |
None |
| MLOC_70552 |
1 |
1082 bp |
MLOC_70552.1 |
Available |
Available |
LOC_Os09g32968.2, FRAME:-2, EVALUE:3e-117, 13109.m03311 protein emp24/gp25L/p24 family protein, putative, expressed |
| MLOC_70558 |
7 |
3600 bp |
MLOC_70558.2 |
Available |
Available |
LOC_Os03g10800.3, FRAME:+1, EVALUE:0.0, 13103.m01213 protein BTBN4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed |
| MLOC_70691 |
5 |
3483 bp |
MLOC_70691.4 |
Available |
Available |
LOC_Os01g49010.2, FRAME:+2, EVALUE:0.0, 13101.m05093 protein ORC4 - Putative origin recognition complex subunit 4, expressed |
CDS Structure of MLOC_70581
CDS Structure of MLOC_70551
CDS Structure of MLOC_70552
CDS Structure of MLOC_70558
CDS Structure of MLOC_70691
Contig Sequence (8411 bp)
>contig_5815 8411 assembly3_WGSMorex_rbca.fasta
AAGCAGCCGCCCCTTCCCCGCCGCTCCATGGCCCTGGCCCTGGAGCTCAGCCGCTCAAGG
TGCGGTGCTTCCGCGTGCGTGTTGGAATCGAATTTTGGCTTCCCGTGGGGAGAAGGCAGC
TATAGCTACAAGCCTCGCCTCACTGGTCACTCTCGCTACAAGTGAGTGACAGTGAGAGGC
GGGCCAGGGGACAGCCAAGATGGGCCTATGTACCTATGTATACAGCCTTTCCTCTCTCTC
TCTCTCTTTCGTCTTGATCCCGAATTATTTTTCAGACGATGATGATCATGATTGAGCTGA
GGATAATGGAAGCTGCATCATCTGTAACACGATTTGCTGAAAGATATTATTCCCACATAG
GTTTGCTCGTTAATTATGTGAACCATTTTTAAAAGGGCATATATTATGATCATGACACTG
AAAAGGGGATGTGTGCCAAGTTGCCAATCATGTGGGACTTTTCAAATGCTCATCAGTTTG
AGACGCTGTGGAACCAATCAAATCTAGGAGAGAAGAGGAATTTGTGGGTTAAGTGAGGCT
GGGCTGCACATGGGTTCCGACTGTTTCGTCTCCTTGGATTTGGCATCGTCTGACGATCGG
CATCTCTTGTATGTCCAGGCAATCAGAACAGGGAATCATAGCAGAATCACAAGATGATTG
GATGGTTCAAACTAAGTTATCTCTTAACATTTGGAAACATGGGCTGTGATTGCAGCCTAG
CAGGTCCGGGCTGGCAGTACAATCCTTCCAGTTCAATCCAGCTATTTTTGTTGTTCAGAG
AGCTTGACAAGAAAAGGATCGCTACTTATTTACAAAAACAAAAAACAAAAAATCACTTCA
ACTTTCCCAAAACTTCAAATTAGGCGACCTTGTCGTTTGACCTTCATGTTTCGAACATTT
TCATAATTGTGCCACGAAGCAGTTAGCACTTAGCACATACTAGTATGCAACCGTTGATGG
ATATCATAGCTAAACTGAAACTCACGAAGCAACCAGGATCACAGAAGGCGCTTTAATGCC
GCCCCATACTGTGTCATCCAAATTACAAAATCCTAGAAGGAAAAAAAACTCATGAATATC
TGAACAGGGTGTAGAACAACACCTGAAACCACACACTGTAGTAATGAAGTCCAGTCGGGT
TGGTGAGTATGAGGAGAGGTAGAGGTAGAAATTAGACCCTAGATGCACCCAGCTTACGCT
CGAAGAGGCGCCGCAGCAAGTAGACCTGCACAGCACTGGCTGCAATAAGGGCAGCTGATT
CGAGGAGTGCCTTGTGAATCGCCCTCTTGCTCATGTTCTCGTTTACTGCATCACAATAAA
TGAGGGAAATATTGCGCCTTTAGCAACAATTCTTTTTTATGGTGATGTCAATTATGCAAC
AGAGGGTAAATAAAAATTCTGGCATGACAGCATAATGGAGTTAGACATTGGGGATAAAGA
CTCTGCAATGGAAGGACTCTGCTAAAAAAAATGATGTTCATACAAAATACCATGCCACGC
ATGCTCACAATCCTAATTAGTGGAGTACCCGGTAACCCCCAAAGTGCAAAACTGGCGTTC
TTTTCAAGTTGGTAAATGATATTGACTCTATCTGAAGATGCTTGTGTTGGCACCTTCAGA
TAAGATGAACAAATAGCAGGCTGGAGCACCTAACATTGCTAAAATTAGTTTTCATTAAGC
AACAGGAGAATCGCACATTAGCCAATGGTTACAGGTTACAGCTTCAGACGAGATAAAAGA
GAAAGAGGAAAACAAGAGCGCCTTAGAATATTGGAGTACAATGCACTAGTACTTACAAGA
GACAATGTGAGAGGAGAAACTTACATATTGCTTGGCGGTCCGTTTGGGCAGTTAGCCAAT
GCTGTTCAAACTGAATGTTGTACAGATCTTCATCCAACTTTCTCATTTGTTCAAACAAAG
GACCAAAATGCTCTGCACCATTTTTTGAGAAGAACGGAATCAGTGGCATGTTGCTTGTCA
GAAGAGTAACACGCACACACAGAAGAGAGAGAATGTTTACCATCTTTGGCATGCTGGTCA
AAATACGAAAAATGACCAACATGCACATCGAAGTCCACAGTTTCATGATACGGGGACTTA
TTGGTGAAGCAGAAACGGTGGACACCTCTCTTTTGAACCATGAATTCGAACTTATCACTA
ACCTTCGCACGAGAATCATGGAGTTGATTGCCATTAGGGTCTTTCACCTGAAATAAATCA
TGACTGAATCAGCTTCAGTAGATGTGACTTACACTGAATCATCTTAGTAAAAATAAGTAC
ACAGATAAACTACAAAACGATGATAGTTAGCTAATCATCGTTCCCTGCCAACAAGAAGCA
CATATTTCACCATGCTAAAGTTAATGGAGTAATGCACAGATGGAGAAGAAGACCATACCA
CGAGATCGACACCATCCTCGCTATAGTGCCACGGGGTGTCTGCCTTGATCACAACAAATG
ACACATGAACTGTGTCCCCTTCATAATCAATATTGTGAGAGAAGCACTCTCCCCTGTCCA
TCACAAACCGAATGGCCACGGCATGGCGCAAGAATGGCACGAGGCATAGGACCAAGAAGT
AACCCAATCTCAAACCCCTCCCGTCCATCATTTAACTGCAAGACACAGAAGTAATCAAGT
TAGACCCTGTCCAGCTAGGACTGAAGCATTATCGAATGACTGCATTGTAACTACATGATG
CCATTCATGACAGTCACACTGATGCTTCTCAACTAAAACCTGTGACGGTCAAGGCCACCG
ACTCGAAGGACAACATATAGCATCTGCTTATCAAATTCACACTGATCCATGACATCAAAT
TCACACGAGTGCATGGCCGCCGTTCAAGATTACACTAGTGCACTGGCTACTCTGAGTGCC
TCAGCAGGACAGTTTACCATGAACGAATCACAGACCCTAAAAGTTAAAGGAGGGAATCTC
ACATCAGCTTCCTGCGACTGCTTCATTCACAGGGTAGCCGGAAAGGCACAGCTGCACAAT
TTATACATCACTACGAAAACACGGAGCAACCGCAAAATTTCTACATCGCTGGAAAATACA
GGGCAGGAGCACGATGCGCATACAGAGAGCTGAGCATTCCCGCTAGATCTATGACAGCGC
TCCCAGAAAAGAGAACAAAATCAAATCAAATCAGCGCGTGCTCTCCCTAACCAATCAATT
GGGGCAGCGAAATGAGAAGCCAATACACGGAAGGCGCGCGCGCCACGGCACGCAAACAGC
CACGGATCGGGGCGCGGATTACCCCCGAGAAACCCCACGAATCTAGCGAGAGAGAGAGAG
GGCTGTTTCCCCCCAGAAACAAATCGAACTGCCAACGCGAGCTGTCCCGGGCGGCTGATC
GATCGATCGATGGGTTCAGAGGAAGGGGGAGGGGGTCGATCCGGGGTGGCGGCGGCGAAA
TCGGTCGAAGCGCGCGTGTTGGGAGATTGGACGGATCGGGCTGACCTTGGGCGAAGGCGG
TTCCGGGGAATCTCCGGCGGGGGTGCGGAGGAGGAGCTCGCTTCGGTGGAGACAAGAGCG
CAACTGCGCAAGGCACGAGAGGTTTGCCCTTTTCGTTGGGTTTACGTTTTTTTCTTTTTA
ACTTCCAAAGAAATTTTCTTTGGGTTTACGTGACTTGTTCGTCTGGGCATTTTTCTGGAC
CTTTGGATGATCCCGGGGGCCCGTATAGAGATTATCTTCTTTTTAGTGCATAGAGATTAT
GAAATCCCCTATTTATCGTTCTATATGCGGCAAAAAAAATGAGGGGAAGACTGATTTGCT
TTATTGATCAATAATGAGGTTTACAGGTATAAGATGAGTATCAAAAGGTTGCAGGAATCA
AATATGGCGTCCCTTCCCTAGGTGCGGCAAATAGTCGGGCAAACCCACAGGACTGGGTGC
GAAGGATTCTATTGGCCTAGCTCATTTAGCGCTTCAGTCACCCCAACTTTGGTAACCTTC
TACAGGCCGGTCTTTTCCGGTTTTCAGAAACTTCTAGAAGGTTGTTGAACCAGTGTCTTT
TTCGCTTTCTACTTTTCTTTTATTATTTTTGTTTTTTTTTTTACTTTTTGTTTCTGTTTC
CAAAAAATCTTCTACATTTTCAAAAAATATTCATCAAATACGCAAAGTTTTCTTAAATTT
CAACATAAGTTCTTGATTTTAAAAAATGCTCCAAATTTCAAAACTTTATCATTTTTAAAC
TTCATTCATAAATACAAAAAATGATCAGGATTTTCAAAAATTGTTCTTCAAATACGATAA
AAATGTTCTGGATTTTCGAAATATGTTCTGGATTTCCAAAAAATGTTTACGGTTTCCAAA
AAATGTTCTAGATTTTCAAAAAAATTGTTCTTAAAACTCGAAAAATGGTTGCCAATTATT
CTCCATTTAAAATTTTGTTCTTGATTTAGAAATGTTTAAAAAATTGTTTAGGCTTCCAAA
TTTGTTTATGCATTTTCAATATTGTTCTCATTTTTAAAATTTGCTTTCAAGATTCAAAAG
ATGTTCATGCTTTAAAAATAATTCACGCTTTCAAATTTGTTCTCTATTTTAAAAAATGTT
CAAAATTGTTTGCGCTTCCAAATTTGTTTGGGGCTTCTCAAAATCGTTCTCCGTTTAAAA
TTCTATTCTCAAGATTCAAAAAAAATCCGGGCTTTAAAAAATTGGTTGCATTTCCAAATT
TGTTAAGGATTTTATAAAATTATTCTCGGTTTCAAAATTTGTTCTCAAAATTCAAATAAT
GTTAGTGCTTTAAAAATTTGTCCGCGCTTTTAAATTTGTTCGGGGCTTTTCAAAATTGTT
TTCTTTTCTAAAACTTTGTTGTAAAGATTCAAAAAAAATCACGCTTTAAAAAATTGTTCG
CGCTTTCACATTTGTTCACGATTTATCAAATTGTTCTTAGTTTCAAAAACAATTCTCAAA
ATTCAAAAATGTTTGTGCTCTAAAAATTTGTTTACGCTTTCAAATTTGTTCGGGTTTTTT
CAAAATTATTCTCCTTTTTTGATTGTTCTCGAGATTCAAAAAAAAATTCATGCTTTAAAA
AATTGTTTGTGCTTCCAAATTTATTCACAAATTTTCAGAAATGTATTTCAACTTCGAAAA
TTGTTTTTGCTTCATATACAAAAAGAAAAGGATAAATGAAATAAGAAAAGAACGGAAAAA
AGGAAATAAACAGAAAAAGAGAAAAGTAACACAAAAAAAGGAAATATTTTTCCTTTTTTG
TTTAATTCCTTTTTTATTAAATTAAAAAAACTTGTTTAAAAAAATATTCTTCAAATTCGG
AAAATGTTTTGCTTCATATACGAAAGTAAAAGGAAAAGAGAAAGAAAAACGAATTAAAAA
GAAAAAAAGAAAGGAAATAAGCACAAAGGAAAAACAGAAACATAATTGTAAGTTGCAGCT
CTTCCCTGTTGCAACGTGCAGCAGGTCGGAGTATCTCTCTCTACACGAGTTTGAATGTTA
TTCATTTCGTCCTGGCAGTAATTTATGCGAAAGCAATTTGAAAACCGAGCATCGAATCAA
ACTTGGAAACCGAGCATTTCCCAAAAACAATAATAGAAAATCAAGACATTAATATGATTA
ATTAGTCGCATAATTAATTAGGTCCGTTTATGTTACGGGTTTTTTCACGTCAAATTAATT
TGAAAACCAAACAATAATGTAATTAATTAGCTAGGAAGTTAATTAGGCATGCAGTTAATT
AGTTCCTTTAAATTGGTATTTCGTTGTAGTGGTGTAATCTATGTATATACCTAATCTGTA
GCAATACTAAAGAAAATAGGTATTTTTGATCTGTCGTGCTATTTGCAACGAAAGAGTGAT
GTTTTTAGTAATCAACCTGCTCTTTAATTTTAAGTCAAATTTTCACTTTTGTAGAAAACC
ATTTGATGTTTTTGGTAATCAACCAGCAACTCAATTTTGAGTCAGATTTTTGGTTTTGAA
GTAAGCCCCCTAGTAGTTTGGTTAATCAACACGTAGTACAAATCAAATTTTTTTTACTTA
AATGTTAACACTCACACGTGTGGCACTTATCAACATGGCGCAACCGTAGTCGATGTTGTT
CGATTCATTTGCACGAACATTGAAGCAGTTGTCATCTGGGTCGAAAGCCATGTAAGCACA
CAACGTCGTGTGGACGTTATCATTTAGTGTCACATGCGTGGGCGCTTCTCGACCGATCGA
ACACACTGCGCTTCCCAGAACGTGTGGATGGAACTGCTCTTCGCCCATATGATGCTCGCA
CGGGTAACGATAGATGACAACTATAGTTGTGCATATGTGGTAGCAAGTTAATCATACATG
GCAACTATGTTTATCATACATGATAACTAAGGGTTTGACCACACGTAGCAACTACTTAAT
CACACATGACGATTATATTTACCATATATGACAGCTATGATTTGACCACATATAGCAACT
ACAATTAGTTTCACATGAAAACTATAAGCAAATTAGACATGGCAACTAAAATTAATTACA
CATGGCAACTAAAGTTGATGAGGGTCGTGTGGGTCGTCGTAAATACATATATGAAATAAT
TGTAATAATATCCAAGGTAGTCATGTCCCCATCAAGTTCTTATAAAGTTCATTGATCGTC
TCCTTGAGTTCGGCCGATCATCTACCTTAACGCCCATCGAATTCATCAAGGCTTTGATCA
TGTTCTTCTTGTGTCGCATGCTCGCCCTCATATGAAAAAAAAAATGGTGTTTTTATCTCC
ATCCAACAACCATTCTATGTGTGATCTGTGCCGCCACAGGAGTTCTTCTCTGTGATAGAT
CTCAATCGGCCGGTCATCAAGTTCCGCTCTGAATGGTTCGGCCCAGTCCTGGCTGGGTCA
TTCCGCGTCTCTTCTAGTTTCCTTTTCAGTATCTTCATTTCCCTTCTTACTGATCCAAAT
GTCTTCCTATCCCAGCGCACCAGTGTGATAGCTTGGCTTATTAGAGATGATAGACTACTC
ATATCAATAANNAATTCCTTCTTTTCCGGGAGCCATTCGAACAGAACTCCCAGGTTAAGT
GGGTTTGTCCGGGGCGTTACAACCAGGCTATTAGATAGATTCAGAAGTTTATGTCTCAAG
TCCTATGCTCTCTCGCCTGCCACAGATTCAGACCATGAGGCCTCAATAGTGTCTTTTAGG
TTGTCATGCGCTTCCCAGGCCACTTCGCCTCAATAGTGTCTTTTAGGTTGTCATGCGCTT
CCGAGGCCACTTCACATCTGAATATGTTACTTCCACCTCATTTCGGATCATCCCCCTGTT
CAACTCCAGGTGGATTGCGCCATGATCCGAAATGGCCGCGGTAAGATGAGTTAAACTAGC
GGAGGGAAACAAAGAGCATGAATCCGTAGATCCCGGAGCTCGGTCAAGTCTAACTCTGGT
GAAAGTACCCCCTGCCACTTTCTTTTTGAATGTCCAGAAACGACCCTTGAACCCAATATC
CATCAACATGCAAGTATCAACCACGTCGCGGAAACCTTGGATTTGGGCATTGCTACATTG
TCCAATTCCCTCTTGTTCATGTGGGTGTAACACCTCATTAAAATCTCCTATACATAGCCA
AGGAAGTGAGCTTGATCCCACTATGTTTTTATCGTACTCCATGTATGGTGTCTGAGGTGA
GTTTGGGCTTCACCATAAACCATTGTAATTCTCCAAGGATCAAAACCCAACTCCCTAACA
CCACAGTCCAGATGGTAATCACAATAGCCCAAAATCTCAATATCTATTTCATTATTCGAG
AACAAACCAATTCCTCCACTTCTACCAGAGCTCCTTACAACATAAAATTTATCGTAACCA
ACAGAACTAGCCAAGTTTTGTACCCTTACTTTATCAACTTCCGTTTCAACTATACAAAGC
AAGGTAGGGGGAAACTTATTTGCTATCTTACAAAGTTTGCGAATTGTCGATGCATTGCCC
ACTCCCCGACAATTCCAGCTAATAATACTCATTGATTCGGCGGCGCTCCTCGAAGGAGAC
CACCGATATAACTTTTTTTGCCTTGCCTTGCCTTCCTGCCACCACATCTGGCAGCTCCAA
CTCCTTCTTCGGCCTCTTGTTTGACTTCTTGGGTGACACGTAGACCGAGGGCATCGCAGA
TGTGCCCAAAGGTGTTTTCTCAGCTAGGGCTAAGATGTCCTCCCCCACAACTTCAACCGT
GGATGCACCCTGGATGCTAGTAGCTACTGCTAAAGTATTTTCCACTGAGTTTCTTTTGTT
GTTGGCTCTATTCGCCGGCGCGAAAAACTCATTTTCAGACTCCACACTCCCATCCCGTAT
GTCACCGGGTTCCTCTCCATGCAGATCATGGTATGTGCTTCCAGCTGGGTCCCCTCCTCT
ATTAGTCGTGGCCCGACCTCTGCCTCTTGCACCACCACCACCATGCCCACCCCGAACCCC
CCCCCCCCCCC
