Contig Data
morexGenes
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Map Locations of contig_5813 (6681 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_5813

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70534 5 2585 bp MLOC_70534.1 Available Available LOC_Os06g46450.1, FRAME:+3, EVALUE:0.0, 13106.m04909 protein polyprenyl synthetase, putative, expressed
MLOC_70535 1 3194 bp MLOC_70535.1 Available Available LOC_Os06g46440.1, FRAME:-2, EVALUE:5e-43, 13106.m04908 protein expressed protein





CDS Structure of MLOC_70534






CDS Structure of MLOC_70535






Contig Sequence (6681 bp)

>contig_5813 6681 assembly3_WGSMorex_rbca.fasta
CCACGCTCGTCGGCGGCGGAGGCCCACCCGCTGCCCAGGCGCACAGGCTCTTCTCCTCGT
CGGGCGCCCTCCTGGGGAGGCTCCCTCCCGCGCCGCCCCAGATTCGGAACAAGGTCCCCC
TCCTCCGCGCATTAACCCCCGTCCTCGCCCTAGCCGGTCCTCGCACGCCCTGTTTGGTCC
CTGGTTCGCGCTTCTCTGTCCCTGGCCTGCCCAGGTAGCCGCGGCGGAGCTGCCCGCCAA
GTGTTTGTGTATATGCCACCGACTAGCGTAGCGCGGCGGCTGAACCCCGTGGACTCGTGC
TCGTAGCTGCACTAATTTGTCCTTGCTGTTGATTTTGAGTTTTTTTTTACTGATTTTATT
AGCAAGTCACTCAGTGGCATGGTGGTTACATTGCAAACGGTAAAGAGAATTAAGGAGGCG
AACAGGAATAGTAACCGCTCAAGTTGTTGTAACTTTCTAATTGGATTGTCCAGTTAGGTG
ACCATGTGTTATTCAACTGTGGATTGGGGTTAGTAAGCCTTCTGCTGTGCTGATAGGTTC
TCTACTCTTGGTGTGGATTAGTAGGTGGTGGGTTGCAGAGGAGCTGCTTTCGTCAACTCG
CGATGGCTGCATGATGCCACCCAGTATCAGACTCGCCAGGATGGGTCATCGAGGGCCGAA
GTAGGTTAACCCTTTATTTGTTCAATGATTTGCATTTGCCTTTGTTATGTTAATGATCTT
TGTCAGTGTACCTCTTTTGTCAATCAAACATCTAGAGCCCAGCTTAATAAAGAAACTGTG
CATCACTATTCACCGCTGGAAAAAAAACACAGCAGTATCCTGCTACACTACATGCCAGCT
GAATACATGATTATGAATTGAAATGCTGGGCATGTCTAACAATAAGCATAAATATCAAAA
CTAGGCTGTTGTACAACCAACCCATAGTTCCACACATTACCTGCTGCCATAGGATTGTGA
AGCATTGCCACCCTGACGGCTCCCATTTATTTGTGCCATTTTTGCTGATACACTGTGCAC
TTCTGCCTGTGAGTTATTCTAAGCATTGGTTTTCATGAACATTAAATGCACCCAGGTCCT
AATGTCTCTCTGCCAAAATCAAAAAGTAGGATGTCAATGCATCAGATGAAATGGGCCTTC
AGTTGCTAATTGATAAATCGACTTGTTATGCAGCGGAATATGTTGTGCCTGGAATGGAAT
CAGATTATAGCCTAGCAAGACAACTGTGCATTATACATTTATACTGTACATAAATTTGAA
ACTTAAATCAAGTGATTTGTTCCGCTTTATCAGAGAAATGTATGTTTTGATATTCCTGGC
CCCTGGCCAGTTATTCTCTATATGTCGTCACCAACATAGAAGCTGAAGAAAAACTGGCTG
AAGGTCCCCTCAGCTATGTGATTACGCTGTCCGTAATGAAGGATAATGATGATGAGTTTT
AACAATGAATAACAGCTGAAATCCTCTTTTTTTTCTGAATGCTTATGAATGCTAATCATG
GAAAGTGTAGTGTATTACTGTTCCCTGATGAGAAAATTCTTCTTGCTCCCAGGAACAACA
GGATCCATTTGAATTGGTTGCTGATGAACTATCGATTCTTGGAAATAGACTACGGTCCAT
GGTGGCTGCTGAGGTTAGTAGTGCATCCTACTCATGTCAACTCTCTGTGGCGCTAGGCTA
CTGGCATGGTGTGTGGATGTTTCTTTTATCTAGTGATTACCACATTGTCAAACATGCCCA
ATTTGCCTAAGTGAGTACTTTCAGGTCCCTAAACTAGAATCAGCTGCTGAATATTTTTTT
AAAGTGGGAGCTGAGGGAAAAAGATTCCGACCTACGGTAACATCTTAATCTATTTTTTTA
GTCAATATTACATCATCACTTTACTCCATGATTTCTTTCTATCCTATCTATGGTACACTG
AATGCATTTATTTACATTGGCAGGTTTTGTTGCTGATGGCATCAGCTCTGAAATTCCCAA
TACCAGAATCGACAGATATTGGAGTTTTCAGTATATTGGCAAGTAAGCTGCGCACACGGC
AGCAAAACATTGCCGAGATAACTGAAATGATCCATGTTAGTATGGCGCCTGACCATCCGA
CCCAGTATGTTTTATTTTTTATTTCTGAAGCTGACATCTATTACAGGTCGCAAGTCTTCT
GCATGATGATGTTCTGGATGATGCTGACACTAGGCGAGGTGTTACTTCATTGAATTGCAT
TATGGGCAACAAGGTACTGTATGCCACACCATTGAACATTCAGTATACTAGGTGAATCAA
CTGGGTCCTCACATTAAGAACTACAAATTACTTTAGTAGTTAGGACACAATGAAGAGCTT
GATCTTCCAGTAAAAAATGCTGCACCACAGCAGAAAGTTTACCTGGACATCATCATTTAA
GATTTTTCCGTGGAGGTACTGCAGTCAGAATCATCTTGGCATCGGTATTCATGAAACTCT
TATGTGTGCAGCTTTCTGTTTTGGCTGGTGACTTTCTCCTGTCCAGAGCATGTGTGGCAC
TTGCAGCACTTGGGAATACCGAGGTACATTATTTATTTATATGCCAAGATAGATTGCTGT
ACATATCCTGTATATTGTTTTTAACGATGCGGAACTTAAAGAGGTTTTGATTTATGCTGG
TCGCTAGATATGTTTGATGAGCATCAGTATCACACAAGTCTGTTTTTGTATATTATTTGT
AGTTTCCACTTGGCATAATCATTATGTCCTTGACAACATGTCCTAGCTGAGGTCATGTTT
CTTTATACTCCTATAAAGATGTCAATCTGTGGTCGTTGTGTGTTCACCTCCTTTTCCCTG
ATGTAAGCCGTTAGATTTGTTGCAAATGCCTGAGATGGTGGTCCTGTTTGTACCAAAGTA
GGGTAGCCTGACTTGTTTTATCATAGCAACCTATTGGGTGGTCTTATTGTTATATCTGTT
TCAATGCTGGAGTATTTAGCTAGTTAATACCAGGCTGTCTGTCATTTCTTACTTTCTTAG
GGAATCATTTTTCTTGTTTTCTCCATTCCAAGCTTATCCATCCTAATGGTTTATCATTCA
AGATTATCCTGTATGGTTGCAGTTCTGACCTGCTCTCTTTCTTCCAATTCTTATATGGTA
CCAAACTTCCAATTGATCAACCTAACTTATGCAGGTGGTATCTCTAATGGCAACTGCAGT
TGGACATCTAGTTACTGGTGAAACTATGCAAATGTCAACAAGCAGAGAGCAACGGCGAAG
GTTAAATAATGCTTCTCTATCATGGCTAAATGTTCATCACATCTAATGCCTAAAACCAAG
AGATGAAGAATAAAATGCTTGGACATATTTGCTTTTTTGTTTACTCTGGTTTCTCCATTT
TTTATGACATTGTTTTTTGGTTCTGATATGATTCTGAAAAAATGTGCAGTATGGAGTACT
ACTTGCAGAAGACGTACTACAAAACAGCATCATTGATATCAAACAGTTGCAAGGCTGTTG
CTATTCTTGCAGGACACACTGCTGAGGTTTCAGTGCTTGCATACGAATATGGTCGAAACC
TGGTTCGTAAAACATCTCTCTTTTCTGGAACTATTTTCCCTTCTGATCTAATCCTGTAAA
GCTCACACCTACTTAATTAATTCGATATCATTGCAGGGTCTAGCCTTCCAGTTGATCGAC
GATGTTCTTGATTTCACAGGAACCTCTGCATCACTTGGGAAGGGTTCATTATCTGATATT
CGTCATGTAATAACAACCATCCTCTCATTTCTTTGGTTACATTTTATTTACAGTGCTTAT
CATCTGAAATAGCTGTTTGCCTCCCAGGGCTCCAGCTACTTAGATTGTTTGTCAGTAGGA
CAGACCTACACAAAATTTTGCTAGCTAACAATAGTGCTACATCAGCTGATCAGCATAGTG
TTGCTGTAATTATGTTAGCCACTGTCTTGAACTTGTCACCCTCATGCCAGACAGATAGAA
TACTCTCACGTGAAAAACTTGCATAATTGCGTTCTCTTTCAGCCTTCATTGACCTATCAC
AATTAAGTTAACATATTAGAAGTGTAGAAGAATCTATTATTAACAGCGTAGATAAGAAGG
ATATTCTGAGCCCTACTGCTTACAAAACTAATTGTGTATGTGGTCAGGCCAGTGCAAATT
AGATGCAAAATTTAGTTATCAAAGAGCTCTTGTGTTCAAGGGGATCCTTGGAGCAGCGGT
AAAGCTGTTGCCTTCTAACCATGAAGATCAATGTGTTTGAGTCCTGGAAACAGCCTCTTG
CAGAAATGCAGGGAAAGGCTGCGTACAAAAGACCCGATGTGGTTGGACCCTTCCCCGGAC
CCTGCTCAAGCGGGAGCTACGTGTACTGGGCTGCCCTTTTTTTTTTAAAGAGCTCTTGTG
TCAAAATTAAAATACTTGCTTCTGTTTATGATCACCTACTTTATGAAATTACCAGCATAT
CCTGTTAGACGAGCCTCAAACAAGGACCACACCCTGCTGTTTCTCTCAGTCGTCATGCAG
GTAGGGCTTGTTTTTTGTGTTACATAATGGCTTTCATGATGCAGGGAATCATTACTGCCC
CAATGCTATATGCGATGGAAGAATTCCCACAACTACATGATGTTGTTGACCAGGGTTTTG
ACAATCCTGCAAATGTCGAGATCGTGAGTGGTTATTTTATATAAAAAAATGGGCGCTGTC
TTGACCTGTATTGTGACCTGACATAACAATCCATACTTGCAAACTATAGGCCTTGGAGTA
CCTCCAGAAGAGCCGGGGAATCGAAAGAACGAAAGAGCTTGCGCAAGAACACGTTAATCT
TGCGGTCAAAGCCATCGAATCTCTTCCAGACAGCGACGACGAAGATGTACTGATTTCAAG
GCGCGCTCTTATTGATATCACACAGAGAGTCATCACGAGGACAAAATAGCAAGATTATAC
ACAAGGTGGAGAAGATAAGGCGGAGTTTCGCCAGTGTAGTGTTCCACTTGGAAAATTTTG
GAAGCCTTGGTCATTGCATTCTTTCCATTGCCCGAGTTTTTGTGTAACATTTGATGAGAC
TTCAGGGTAACCATTCCTGGGAATCGTCATAGTCGCAGCTATAGTGGTTTTAGTTACTGG
GGGCAGCAGAATCTGTGTAATAGTATCACGATTGACGATTGCAACAATGACCTGATCATA
AGACTGTAACCTTATAAATCTAAGTATGTAACATTATATACGAGGGAACATGAATCTGCT
TCTTGTGGAGAAAGCATGATCTTGCATCTGTTAACCCAGCAATTTATGCCATCTTTAGCT
CTTTATCCTCCATTTCTTGAACTGAACTACATCCATCTCAATTTTGCCATATTCTGGAAG
ATTCTAGATGATATGCAAGCTATAATGTGCTAAATACTCCATGATAAATAAAACATTATA
CAATGGTAACAAATGTTGATCTGGACATATCATCAATGGGAACATAATCTAGAATGTCAG
TGTAGTTGCAACTTCAAATCAAACTTCTTTCTCTTCTTTTGAGTGGAGGACTTGAGAGTT
GAGACCTAACGTGGGCCTTCAAATCCCATCATGCTTCTCCCACTGCTAATGAATGCTAGG
CTTGGCTCCAGAACCTCTCCTTGGCCCACGCGATCGCCTCGTCCACGGCGGCTGCGCCGA
CGCTGTCAATGTCGCCGTCGTCGTCCATGAGCAGCGGCGCCCGCTCCCTCACCTCCATCA
TCATCGCCTCCTGCATCACCGCCTCCTCCAGCCGGTGCGGGCGCGGCCGCGGCGGGTTGC
CGAAGAGCGACGACGACGCCGCCGAGGACGGCGAGTAGTAGTACCCGTAGTCGTCGGCAA
CGCCGGAGCACTCGGTGCTGGTGTCGGCCGCAGCGTAGTCTGCCGCCGGTGACCGCGCCC
TGCCGCGCCGCTGCGTCCGCCGGAAGCTCGGCTCGCGGCTGCTGGTCTCCGGGTTCGACG
TGAAGCAGCAGAAGCCGCTGCTCGCGCCGCGGTGGTGCCGCGATGAGGAGCTCTCGGCGG
CGGCGCCGTTGTTGCTGACCGCCGACGACGCCGCGCTGCTGCCGCTGTGGTTGGTCCAGT
CGCTGCCGTTGCCGTAGTAGTAGCGGCACGCCGGGTACGCGGCCGTGGAGCACGTGAAGC
TGCTCTGGTACTCCGCCCTCGTCGACACGCTCGACGGCGGCGACGAGTCGTACCGGCGCG
ACGGGATCGCAATGGGCCTGCAAAACGATGGCATGGTAGTCAGAATCAATGATGATCGAA
CAATGCAACGTGCTTGTGCCGTCACGTGACCCGAAGTCCAGAACCAAATGCTTCATGCAT
GCATGCATGCACGAATCGTCTAGCTCACCTGAGCTTAGAGGCGAAGGAGGCGAGGGCGGC
GTCGCCGCGGCCACCGCCGGTGGCCGCCGACCGGAAGGCGGAGCGGCCGGAGCCGAACTC
GTCGGAGCTGACGATCGACGAGGACTTGGTCGACTTGGACCTGGACCTGGACCGCACCTG
GCGTGCACGGGCGCCGAAGATGTCGTCGAAGAAGCCCTCCTCTGTGGGCACGGCCGCCGA
CGCCGGCCTCCCACGGCCGTCACGGCGGCCCAAGGCGCCGGCCGCGCCGCCGCAGGGGGG
GGACGGGGGGCGGCCCGCGCGCGCGGCGGGGGCCGAGCGGGCGGCAGCGTGCGCCGGGGC
TGCGCCGACGCGCCGGCTGCG