Map Locations of contig_58084 (5742 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_58084

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70506 4 2297 bp AK375821 Available Available None





CDS Structure of MLOC_70506






Contig Sequence (5742 bp)

>contig_58084 5742 assembly3_WGSMorex_rbca.fasta
CCGACAGAGGCAGGCGGAGGCCGACGCCCCGTTCGACGAGCTGGAGGCGGAGGAGTCTGC
AGCAGAGCAATCGAAGGGGCGGAGCTGCGGCAGGCGGCCATTTATCCGCCGGAGGGCATG
GAGATTGTCGATATCTCCGATGAAGAGTAGATAGGTTATATGTAGTACATATATTTTATA
TGTTGCATGCTTTTGTAAGGATTTGAGGTTTCTAATATGAGATGTTCGGTTGTGGAATGA
ATTATTTGAGGCGTCATCGATCAGTGTCCTCGGACGCGCGTTTGAGGGGCTTGATTTGCA
AGGTCATACTATAAATGCTCTAAGCCCACAGTGTTGACGCGTAAAAAAACTGAATTATTT
GCCGGAGTAAGTTTATTTTTTATCGCAACTGTATATGTGATGTGTGCCCTGAAGTCTGAA
GAGGCGGGGGACACGAAAAGAAATGAAATCGTCCCAACACCCGTCAGATTGCTGGGAGTT
CCGATGGGCACCAAAAAGGAAAGCGGGCCGAGCTCCGCCGATCTTGCAGTGGCAGCAATG
GCCGCTCCCCCCCCCTCTAGATCCGCAGGTAAGCAGCACTGTCATCATCCTCTCCCCTCC
TCTTGGTGTTCCTGATTAGTCGGTTTCTGCATTGACGCCCCACCTCTCCGTGCAGCTGCA
GCCCATGACGGACGGGTCGGCGGCGAGCAGGCTGGAGCACCACCACCACGGCGCCGGCGA
CGGTCCTCCCTTCCGGATCGAGGACCTTCCCGCGGTAACTTCCCTCGCGGCCTCCGCTTT
ATGTGTGTCATGTGAGGCCTGTGGGGTGGTGTTGTCCATGGATCTGCACCTCAGGGGCGA
AAAAATGGTGTTTTGTTGCCTGCAGGGCAGGGGACTTCGATTGCTGTCAAGCTGCTTGTT
GTTGGCAAGCCAGCTTCCTTAAGTTGTTGGCAAAAGGAATCAATTTTCACATTCCGACTA
AATTTCATTCTGAAACAGGGAACTGCATGCAAAAGCCAACATGTACATGACTGATAAGGA
GTAAAAAACTAAAAAAACAGTAACATAATTGCGCCGGACTGGGCACTAGATTACATGAAA
GTTACTTGTCTACAGAATTGGAACTGCATACAGATGACCACTAGTTTCAGGGGCACCGGA
GAAAATGGTTTCCATGCCATCAGTCAAAATTGTTTTCCTCATAAATACAAAAAAAAGAAC
ACCTCTCGCTTATTTTGTAGCTTCGGGTTCCATCCAAATTTGAAGGGGAAATTTGCTTGC
TGTCTACACTCTTCAGAGCAAAATAGGCTGAAAACTGTCCATTCTCTCCGGAAGCCACAC
AGGCAGACACATCTTTTAACGCTCCCACAGACGTCGCCTATACACACCTGTAACGGCACC
CGGGAGTACTGAAAAATTGTTACGAATAAATCGTAAAAAAACCCAATAAAAACTCTCCAA
AGAGATGCGATTTGCATTTGGTCAGATTTCTCACTTTCCAATGTATACACTTTCAGCATT
GTGCATTTTGATTTTCAGTAAACTAGTGCCTATTACGCTCGTCTACCAGTCTAACAGTTC
ATGCCCTTGTCGCAGGAGATTCTACATGTTATAGTGTCACTGCTCCCACTAAAAGAGGCT
GTGAGGACCAGCATTATTTCAACAAGTTGGAAAATGCTCTGGACATTCCACCGTAATCTG
TGTTTTTGTGGTCCCAATGAACTGGATGATGACCCCTCAGTGCCCCCTTTGGAGTCTGAT
GAGGAGGCCGCCGTTGATGAATATGTCAAAACATCACAAGCTAAGCTGAAACTAAAACGA
GATAAGTTCATTGAGGCTGTGAATTGTGTTATTCAACGGCATAGTGGGGTAGGAGTTAGT
AAGTTTAGCATCAGGTGTGGCCTGCACAAGGAGGACTTTGGTCATCTTGTTAGATGGATT
AGTTTTGCCGCTTTGTCGAGGGCGAAGATTGTAGATTTTGACCTGAAGAAAATTGATTCG
CCGTCTAAAGAAGTTAATCAGTTCCCTCTTGAGGCTTTAGTTGTTCAAGGCAGCTCCTCA
CGTGTGCAGTCCTTGTATCTCGCTGATGCTTCTATAAAGCCACACTCACGCATATGTGGC
TTCACAGTACTCAGAAGGCTAGTTCTGGAATTTGTTGAGATATTCGGAGACTTTCCAGGA
TTTTTAGCAAACTGTTCAGCACTCGAGGACCTAGAGATGATCGAGTGCTCCGGTGTAACC
AATTTAAGCATACCGCAGCAACTTCATAAACTTCAACATTTGCTAATTGACAGAATGGAT
GTCAAGACGGTTGAGTCTCATGCTCCTGATCTTGCTCATTTAGAGTACAAAGGAAAAGAG
ATCCCTATGGTACTTCATGGTTGCTCAAAGTTAGAGAAGGCTACAATTAAGTTTGAAGGC
AGCAATGGATTGGCTCGTGTATTCACTGCAGTTCCAATCATTTTGCGAGTGAAGGTGCTA
AATGTGCAGGCTCAAATATCTGCTTATGAACAGGTTACCCAGTGTCTATTTATCTATTCT
TGTTTGTTTACCTCATAGTTCTTGAAACCGTGTTCTAATGTCATCGTATCTGTCCTTGTC
ATGTCTCAGTTGCAGAAGGTGGCACCAGGAACACGTGGCATGTTTATGCATTTGAGACAC
ATGACTTGTGGACTAACTGTCGTCTCTAGTGTACCAAATTCCGATATTGGAGTTCTTCAG
CTGGCCCGCTGTCTGAATCTCGCACCCCAACTGGAGACGTTGCACCTGGATGTAAGTGCC
ATTTTATTTTTATCGGTTTCGGTAGATAAATAGATGGACCTCTTGTATACTTCTGCATGC
TTGCGTTCATCACTCTTCAGGGAAGACCTGTACCTGGACTCTTTTTAACCGACTGGTTGC
TAAACTTCTAAATGCAGATGATGTATTGGCACCGTAAAGTTTCGGTTCCTGATGATTTGG
TGGAGGAGGAAGAGCCCCACATGCGTCGCCACGATCATCTCAGGACCGTCTACATCAGCG
GGTTCCGGTGCTACACGGCTCAGACCGCGCTGGCATGTTGTATCCTGGGAAATGCTTGTG
TTCTTAAGCACATGACGTTACAGCCCTGGATCGCGATCAGGATATGCCCTTATGCTGACC
TGATGAATATTGGCGTTGAGAGAAGATTTCTACTAAGGGTTCGCAAGTGGGCACTACTCA
CCTCGGAGCGCTTCGGTAAGGTGATCACCGTCTTAGACGGCTCTTCAGAGTGAGTAAGCC
TATATCATTTCCCCATCTGTCTACTATCAAATGATCTTGTCGTGCGCTTGTTTTCTATGT
GTTATTCAGGCTATAGCTGGTGTATTGTGTTATCTGTTTGGATGGATACTGTTCTACTGT
TGAACTGGCTAGTCCCAGTATGCACTAAATCATCTTGAGCCATATGGTCTTTTCTCTTCA
AAAAAAAAAAAAACATGAACGGCAACCCTTTATTCATTTACATTTGCCAACTTTTGTGAA
AGAAGTAATACTATATCCGAGTAAAAAATGAAATGTATCTTCAAAGTATGCGCTACATCA
TCTTGAGTCATACAGAACATGTACACAGAATTTGCTGCATCTCATTTCACTTGGCTGGCA
CTGAACAGACAGACATGCTTTAAAACCATGCTCATTCTCTAGCCCAAGCACACCATGGCG
CCCAACATCAAATGAGCATGGTTTTTTATAGCATGTTTCAGGGGTGAAGAAAGCCTGTTT
TTCTCTGTAGCGTATCCACACAGGAATGAATTTGCGGGTTGTTTGGGCGGAATGCGACCC
GAGTGCTCAAAATTGCGCCGAAAGTTGGATATGGCCTATTCACCGCATCAACATCATCAG
AAAGATGGTCGGGAGGAGGGTTGTGGATGCACATGGATGAATCGAGGAAGATAGGAAGTG
TTTGGTCAATGAACCGTAATGAAAAACGTAAATCGTGATCCAACAAAGGCGAGCATAACA
CTTTTGTGTTTGGTTGCTGCAAGCAAGATCCAAAACAAAGGATGGACAGACCACCCTTCT
CCCTGGAAGAAAATTCAGATAAAAAAAGGACGTTGAAAAAGGATCCAAAACATGGATAAT
AATTAATAAACTGAATAAGCTGCGAAGGAAAGAAGATGATTTTTCTTGCAAGCGCTACCA
CCTGATCGTTACCCAGTTGTGGAACACAATGTGACCCATGGAAATATGGAATTTGGGAGA
GACGATGTCGTAAACCAAGTCAGGATGTGGCTGGATGAAAGCACGAGCACATACCAGATC
GTCTTCCACGCCGCCCACGACCATCTTCTTCTTCATGTTCATTGTGTTCTCAGCCAACGT
GTTTGCCATGAAAAATCATCATCTTCTCACCGTCTAGGTCGTCTGAAAGCAGTCATGGAT
AGCAGTGAAGAAATCCAGGATCCCGAGAGCTAGAGTTCATCTGATTTGGGCACCAGGGAC
ATTTCGGTCATTCACTTTCTAGTGTAAACTTGAAAATTGGTTCAAATCTGATAAAAAAGG
GCAAGTCATCAATGTGCCAGCAGAGATGTGTGTGGCAACAGATCAAATCTCCCCATAAAA
GGGAAAACGCAGACTAAACTCAAATAGCTCATCATCGTCCTTCTACCCATCTAGATCCAC
AAGTAAGCGACACTATCATCCTCCACTTTATCCTCTCCAGTAGGTATTCCCACTAGATAG
ATCGCTTCATAATACCTTTCTCCATTGTTGGTTGCATGCATATCTCGATGCAGAGGCCGG
GGCTTTGTCTCCTTTTCGAAAAAAACCTTTCTCCATTGACATATGATTTTTGAATCCCTG
CAGTAACCGATGGAAGAGGCAACGGCTGGCAAGTTGGGCAGGTTCGATCATCACCATGGC
ATCGCCGATGCGTCGAGCTCGCCACCGTCATTTAGGGTGGAGGACCTTCCTGCGGTAATT
TTCATTCCATCAGTCACCCTTTTTCATGCATTACATCAAGAGAAATTAAGTATTTACTAA
ATGTTCTCTTACATTACTTCATGTTATTTTTTAAGTGAGCCTCATTGTATATGACATCTT
GCATAACTTGTTTTATGCATGAATAGGATATCAAATTGCTATAGAAGATCATGCATCAAA
CACCCGGTGCAACAACAATAACAAAACTTCAGTTTGCATAAATAACCATATGAAGCTATG
AAATGCATACACATGATTCCTTAGGCAACAGTTATACACTTTACTACAATATGAACAACA
AAATTCAAATAACTAAATCAATAGAGTCATGTGATAAGTGCTTTGCTTTAAAAGAGCTAA
TAGAGGACACAATAAATATCCGAGTTCCTTGTGACTAATGTAAATATGTGGACCGTAAGC
ACTTGTCATACTTATCATATTTTGCTAGACTCTTTGTTACCGTGCATTGCTCATTCTCAG
CTCGAGATTTGGCGCATACTTCACCAGTGAATTCAAACCCCGGTGATATGATACGCTCTA
TCACATATAAGACACATTATTTATTCTTGAAAATAACCACCATACCTATCTATCATGACA
TTTTCATAGCCTATCGTCGTTTCCTCACGACAGTAGCCATGGGTAGGCTAATCAAGAGTG
GTTGGAGCCGAAAGGACACCGGCGAGCTCGGAGAACGAGATTGGTACAAGCAAGCAAGAC
GCATGATGTACCTAGGTTCGGGGCTCTCCGTGGGAGATAATATCCCTAGTCCTGCCGAAA
TGGTTGATGAAACAGAGTGTTTACAGTATGCTCCTTGAGCTG