morexGenes - Barley RNA-seq Database

Contig contig_58060
Source Contig contig_58060
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_58060 (8566 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_58060

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70487	2	1422 bp	MLOC_70487.1	Available	Available	LOC_Os01g61460.1, FRAME:+2, EVALUE:0.0, 13101.m06543 protein leaf senescence related protein, putative, expressed
MLOC_70488	1	323 bp	MLOC_70488.1	Available	Available	None
CDS Structure of MLOC_70487

CDS Structure of MLOC_70488

Contig Sequence (8566 bp)

>contig_58060 8566 assembly3_WGSMorex_rbca.fasta
GACGCGCGCGCGCGCGCGGGGCCCGTGGGGCGGCGGGCGGTCGTCGTCCCCGACGCCGGC
CGCGCCGCCGCCACCCCGCGGCGCGACGTGCTCTCTTCTTCCACGGAGAAGACCATCGCC
CCGCGGCGCGACGTGCTCCCTTCTCCGGAGAGGCCCGTCCCCGTGGCGCTGCCGCGCGAC
GACGGGAGAGAGAGTCCAGGGCACGCGACGGCGACGGAGACGGAGGTGATCCGGAAGGTC
GCGCCCAAGGTGAAGAAGCCGAAGAAGGCGAAGAAGGCGAGGCGGCAGCGGCCGGCGAAG
AAGACGGTGGCGGCGGGCGTGATGGGGGCGCCGGAGACGTGCGACCTGTCCAGGGGCGAG
TGGGTGTTCGACAACGCGAGCTACCCGCTGTACCGCGAGGAGGAGTGCTCGTTCCTGACG
TCGCAGGTGACGTGCATGAAGAACGGCCGCCGCGACGACAACTACCAGAAGTGGCGGTGG
CAGCCCAAGGAGTGCGACATGCCCAGGTGCGCGCTCGCTCTCCTCGATCGATCAGGCCGA
TCCGATGATTGGCAGGACGACGCATGCATGCATGCATGATGAGACGGCAAGCTTGATTAA
CATGTTGGGGTTGCAGGTTCGACGCGAAGCTCTTCATAGAGAGGCTCCGGAACAAGCGGT
TCATGTTCGTGGGGGACTCGCTGAACCGGAACCAGTGGGAGTCGATGGTGTGCCTGGTGC
AGTCGGCGGTGTCGCCGGACAAGAAGTACGTCACATGGGAGGACCAGCGGGTCGTCTTCC
ACGCCTGGGTGAGTACAATTCTACTCCTACAATTCTACCCTACAAACAATGGCACGGCGG
CATCTCTCGACCGGGGCCGGCGGTTCGTGCCCCCCAACGATGGAGAAGGAACCTTAGCTA
GTTGGCCAACCGGCAGGGCCCACGGCTGCTGCTGCAACGGTTTTTTCAAATATGACGTCG
TACGTACGTGCGTAGTACCTACCTGTACCGTAGCTGTGGGTGGCGGCTTGGCGATTGCAC
CAACTGCCACGACGTATTCCATCCGTCTAGCTAGGGTGTCATTTTGTGCCTGCTGCTGAT
CAGGTCAAATGGTGGTTTCTTAATGAATCCTGTTTTTCGTTCATGTTGATGAACAAATAA
TGAACAGGAGTTCAACGCGACGGTGGAGTTCTACTGGTCGCCGTTCCTGGTGGAGTCCAA
CTCGGACAACCCCAAGATCCACAGCATCCAGACCCGGATCATCGACGCGGAGGCCATCGC
GTCGCACGCCGCCAACTGGCGCAACGCCGACTACCTCGTCTTCAACACCTACATTTGGTG
GATGAACACCCTCAACATGAAGCTCAAGTATGTATAGAGTGCACAACACGAGAACATTAA
TTGCTGCATGCCATGCATGCACGGTCGAAGTAGAAGTAGTAAAACTACATGCGCTGCTGC
GATGACGATCGACACGGTCACTGACTGACACGGAGGTTTTGATGGATGGATTGGCAGGAG
GCCGGGCGGGCAGGACTGGGAGGAGCATGAGGAGGTGGTGAGGATCGAGGCGTACCGGAA
GGTTCTCAACACCTGGGCTGGCTGGGTGAACGACAACATCGACCCGGCGCGCACGTCCGT
CTTCTTCATGAGCATGTCCCCGCTGCACCTCAGGTACCGTATCCCCTACCTACCTACCTA
CCTACACCCCCCGTGGTTTCTACTGTATTGTGTTCCACTCTAGGTAAATCGTTTTTTTGT
TCTTCTGGGTGGTACGTAGTCAGTAGGCGCGCGTACCTACGCGCACCAGCACCGTAGTTC
GTAGGAAACGTTAGAAACATGGATATTCCTAGCACAACCAGAGGTTCGAGTTACAGCCCG
ATCGACACGCATGGCGTCGACGAGGGGCCAAAAAGGCGAAGCCGGCAGCGCATGGTGCGT
ACCGGTCTACGGCGAGACCGGTGCACGCGTCGGGAATTGCAGACGCGCACGGAGTGGTGG
GGTCCCGCACGGTCGATTTCCGGGGGCTGGAACGAGTCGTCCGGGCCATGGAATCGGACG
GACGCGTCCCTGTCTTGGGAGAAAACGGATGTGACGGACAGTCGTGGCAGACCTGGCCCG
GCGGCGTGTTTTTTTTTTTTTTTGAGGGGCCCGGTGGCGTGCTTGCTTGAATATTCCCCC
GGTTAAAAACCTACTACTATGTCATTTTTTTTTACAAAGTACAATCAAAGTCGTACACAT
ATACACGAAAGTAAGCTCACTCCTATGAACGCACGTATGAACATTCTATCCCTATGAACA
CCTTTGAAAGACTATACCAGTGGTTTTTTATTTTTCGGTGATGGCGCAATATATATCCTG
GTGATGGAGCAGCCGGGTCGTGCAACATTCTCTTAGGTGCGGTGCGACTAGCAGAGCATG
TATGTATGTATGTATGTACTGGATCAGGATGGAACACATGGCCTCACGTTGCCCACCCGC
TCGTTGACCCTCTCTCTCTCTGCACACATGTGGTACGTAGCATACTCTTGCAGTTGGTGC
ACTGGATACCGTTATACCGTATAGTTTAGTGACCCAGTTATAGGATACACATATACGCCG
TTAGTTTACACATGCATGGTTTGATATTCCAACACAGCGTGGTGCAGTACATGCTAGTAC
TACGTACTAGAATAAAGTATATGGACTAATCTACGGTCACAAGGAATGCCACCCCACCAC
TGCATGCCATGCATGATGCCACTGCTAGTCTGCTAGTACTGGGCTTTTCAAAGAGATATT
CCATTGGGAACGCCATGGAAACTTCTGTAACCACGGTGGCACGGTATGCGCATGTCGTGA
CCAGCACTGCAGTGAGAAGTATAATTGTGTGCACGAGACGTGGATACGTCTTAATTTTTA
GATGTCAGTTGAGGTGGGATCTCACTTCTCCCCCTCCACTTTACGCGGGGTCAAATTAAC
GACGTGCGTCACAACTCAGAGCACACAAACGGCCGGGCTCGGCACTACGCTCTTTTACAA
AAGTCCAAGGAGAAGATGCTCCTCCAATGGAGCGGGCAGTTGCTCCCCTCTCGTTGTCGT
CCAAAGCAGCACTCTCAGAAATTAATAATGGAGAACTAGTCTCTCTACTCCACAGGACCC
CAGGAAGGATACACAAATACATATGTGTATCTATGCGTGGGTATAATTCCGTGTACCTGT
CAATCACATGGACGGACGCTCGGCTCAAATAATTATTCCGCGCACATGAATCTTAGAGTA
GATGGAAGCTTCCGTCCCGGATGAATCCCCGGCCCCGTACATGATGCACCAATCATGCAT
TTCATGCGCCAGCGACGTACTACTACTAGCTAGCTCGTAATCGCATTCGCATTGGTGCGT
CGTGAGATGTGGAATAGTCTTCGACCTCTGCCAATGATCGTTCCGTGTGATCATCCCGTG
ACCGCATGTTTTGGATCTTGGAACGGACGACACATTATTTACGACAAGTAGCCGGCTGCA
GGTAGTGCCAGTAGCGTTTGGGATTTTCCTTCTTGCGTAGTAGTAATAAAATCCAATTAT
TCCTAGCTAGTATTGGTGGTATAGAGTTTCTGGTGCTACGTCGAGTGTATTGATTGGGAG
TAGCGTTATACACCAGTTTGGATCACACGTACGTAGGCCTGGTGAATGCTGGCCTGCTTG
CTTAACCAGATTTGGTCGTGCTATATATGAGGATCAAACAGAAGCTTGTGCTGTGTTGGC
TACCTAACTCCATCCTAAGATTGATGGATACATGTTTTAGTTCCCGTCAAGCAAACCACT
TTGATTTGCCTTGGTGTTTTATAGTCAACGATGCTATGTTCGTAGTGCTAGTGTGCGAGA
AGATATATATGGTGTAACCAGAGAAACTGCCATGCATGGTGACCGGTGAATGAACGGATC
AACCAGGATCGCGTATGTCGTCACTAGGAGAGCCTAGTAAGTGTACTAGCTAGCTAGCAG
TGGTGCCACGTTACTTTGCGTGTCCAGCAATCCCGAAGTTGTTAACTAATTTCAATCGGG
ATTGCGTCCACGATCCAACGAGTTTATCAAGTCCGTGGATAGCTTGGAGTTGGAGGCATG
TCGCATCAAAAGACGTACACAACTAAAGTTGGTCAACAACACTATTTTACGTGTAGATAG
AACTGGATTCATTAGTTGGGTTGCGTGATCGGCTCATGGTGCGAATCTGCTAGAGCTAGC
GCTACGTACCTTGCTCCACACAAGAAGAGTGTTGTGAATTCTACTAGCTTTTTTCAGCTG
CAAATTCTACTACGTTGGGGAAACTGGCTGATTTTTTTGTCTGGAAAAACAGCCCGCAGG
TGTGGGGCAACCCGAACGGGATCCGGTGCGCGAAGGAGACGATGCCGCTGGTCAACTGGC
GCGGGCCGATATGGCTGGGGACGGACTGGGACATGTTCAAGGTGGCGTCCAACATCACCC
GGGCGGCGGCGCCGCGGGTGCCCATCACCTTCGTGGACATCACCACCATGTCGGAGCGGC
GCAAGGACGGGCACACCTCCGTGCACACCATCCGGCAGGGGCAGATCCTCACGCCGGAGC
AGCAGGCCGACCCTGGCACCTACGCCGACTGCATCCACTGGTGCCTCCCCGGCGTGCCCG
ACATCTGGAACACCATACTCTACACCAGGATCATGTCCAGGCCGGACCCCGGGATGCCTG
CTATCACGGCCACATAGGTTACAGCACAGAAGTTCATTCAGAATTCGGTTTAAAGTTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTTACATTCTTTCTGGCCTTTTTAGTTTTTA
CATGTCAAAATACGCCAGCGTTTTTTTTTCTTTCTTTTTTTCATTGGGGGTAGGTTAAGT
GGAAAGAGATTATGTAAGGTGATACATGGCTCATGGATTGCCATGTGCTGCTGGTGCACA
TATGCGCTGTAAGGAGGTTCCTGCTCAAACTGTAAATTCTAAAGTCAAAGAGACGGACGG
ATGGTTTATAGAGAAATGGACAGTTGCGTTCTTCAGTTTATTATCTTCTGTTTTTTAGGG
CAGAAGATCAAAGGGGAGTGGAGTAGGAGGCGCTTTTAGGTGATGATCGTTGCATCGCGA
AGCTTGATGATTTACCTGAAAAAGGCGAGCAACAACAAAAACAATGAGCTAGCCGTGAAC
TAACGACAATATTGCAGGCGCCTACGGTTGATTGACGGTTCGGTGTGCAGGTTGGGAAAT
GCCTTTCGCCCTCTTTCTGGTAGCAAAGCTCCGCGTATCTCTTTGGCCCGGGTCAGGCGT
TGCGACAGGTACCAAACGTGAATCGTGGCACCAACTTGCGGTACAGCGTAGTAGAGAACA
GAGCAGCAACGTCTCTGGCGAGTGGCTGCCCCCAATAATCCTAGACCTACAGGGTCTTTA
CAGGTTCATTACGGACCATTCATAAATAATCTCAGCCTCACCTGATTTTCTACCGGGCTG
GCCCACCTCACTCTCCTTCTTTCCAATCACCTATTGCCATGTCAGCATGTAAACAAAATC
AGTCCGTAATTGTCTGTATGTGTAGCATTACTGGGCTGCCCCAGGGGTAGTCCCGGAACC
TGCTACGAGAGAAGTATCGTTTTTTCTAAAGAGATAAATACACCCACGGTGCATAATACG
GTCACTCAACTTTTAAATACATTCGATACGATCACCGAATACGATTTGACGTAAAAATAT
AGTCACCGTAACACGTATGCGGTGGGTACACTGCTAGTTTGACCAACTGTTGACCGTCAC
GTTGTGCTATCTCATTTGAGCAATTTTGCATGGAGGTGTTTTGTGTAAAATAGCCAAAAT
CCCCAATTCCCTCAAATCCCTAACCCTCACCGCACCGCTCCGTTCTCTTCTATCCCCTCC
GCCGCTCCGCTCTGCTTCCCCACCACCTCGCTCTGCTTCCCCACCACCGCACCACCATCG
TCGTCGTCGAATCCGTTGCCAGTTGCTTCCCCTTTGGTGGTCATGTGCGCAACAAGCTCC
TCCTCCTCTGTTGTCCGTCGTCGGGCGCTGGCGCTTCCTCTGGTCCGCTGCCCTTCCTGC
AAGGAGAAGGTGCGCATGTACATTTCCACCACCGAGAAGCACGACGGGTGTGTCTTCTAC
AAATGCCAGAAGAATGGGGTTAGTGGTTCTCTTCGATATATTTCCTTTTCATGGTTGGTT
CTTGGGTTTTGGATCTAAAGATCGGAGTTTTTTGACCTTGGCATCTGCACTAGTTTTGTT
TGTCTAGGTGAATTGCGATCTTTGGCATTGGGAATTGAAGTACGTCCAGTACCTCGTTGA
CAAGCACTATCTCGTCGGTGATGCTGTTATGGATGCTATTGGAGCGGCGGAGGAACGAAG
AGAGGAACTTCTCAAAGCACAAGAGCTTACCTGCATGAATGGCTCAACCAGCTCGAGGAA
GACTATGAAAAATGAGAGTGCAAATGGGCTGAAAAGGCAGCAAGCTCCTGCACTCATGGC
CCTTGGGAGAGAGCTGGTGACCCTCATGAAGATGCTTGTTGGTGTTGTGGTGCTGCTAGG
TTGTGTTGCATTGGCGTTGATCATGTTCAAGATGTGAAGTTGATGTTGATGGTGAAGAAT
TGCTGTTGTTGATGCTGAAGGAGTGAAGATGATGAAGTATCTCTTTTGGGAAATGTTGTT
CTGTCAGTTAGTCCTTGTACTCTGCATCACTTGTAGTGAGTAGTACTTGTAGATGATGAA
GTGAATATGATGAAGTATCTCTTTTGGGAAGTAGTACTTGTAGTGAGTTTGGTTAAATGT
GGTGTTAATAGCACTTGTAATGGTTTCACTGGTGTAGTGGCAATGCTATGTTGAACCTTG
GAAGCTATGGTTTATCAATGAAACTGTTTATCAATCTGCATTTCTTATATTTACTTTGGA
ATGCCAGTACTGACTAAAATAGTAACATAAGAAGAATGAAACTGTACTGAGACTGTTTAT
CAATCATAACATAAGAATGCCAGTACTTTGGAATGCCAGTACTGACTAAAATAGTAACAT
AACATAAGAAGAATGAGACTATTTATGATTTATCAATGAGACTGCTTATCAATCATCATA
AGAAGAATCCAACACCTGATCTTCAAAGTACATGACCACTGTATTTGAAACCATCCACCA
ACAGAGTATTTAGCAAAAAGAGTAACATGGTACCATACATGATCACTGCAGCACAACACA
TAACATGTGCATGTTCTCTTATACATGATCATGGCAACTACTTGAAGATATCAAACATTG
ATGTTTTTGCACCTTTTTGGACAATCTCCTTGATTCTCAAACCACCTTGATTTCCTCTTT
GCTCCTTGATTCTCCCTGCTTAGCTCCTTTGCTCTCTTTGTAGCACCTTTCACCCTCTCT
TGTGTAGCAGCAAGATTCTTATTTGCTTCTTTCTTTGCAGCAAGTAGCTTCTTTTCCCCT
TCTTTTTTTGCAGCAAGTAGCTTATTTTCCTCTTCTTTTCTTGCAACAACTTGTTTCTTT
TACTCTTCTCTTTCTGCAGCAGCAATTCTCTTCTCTTCCTCCTTCTTCTGAGCTGTTGCT
TCCCTCTGAGCTCTCTTTTCTTCCTCCTTCTTTGCAGCAACTTCCCTCTCTGCTTCTTGC
TTTGCCTTGTTCTCTGCAGCTATTGTTTTCCTTGTTTCTTGAATGATCTGTTTGGTCTCA
GCTTGAGCTCTCATGTTTACTTCTGCTTCTTCTTTCCTTTTGGAAGCTCTCTCCAATGCA
GCCAATCTTCTTCTCTCTGCTAGTTCTGCTTTCTTCTGTGCTACCTCATGTCTCTCCCTT
GCTATGTCTTCAGCTTTTTTTAATTCTTCTTCCCTCCTAGATGAAAGGATGGCTTGCTTT
CTCTCCTCTAGATCCCTATCTTTCTGATTTTTCATTGCCTCCAGCTTCTGTGCTAACTCA
CCTGGCCTAATGGTGATTGAGCTAGCTTGACTTGACTGAGTACCATTAATCTGGTTGAGC
ATCATTTGGGCAACACTGAGTAACCCAGAAGTAGGCAATGGCCTCTCTTGAACAACCCTT
GCTGTTGGCATTTGGNNNNTCATGTTATCCACCATAAGATCTTCAAACACAAACACTTGG
TTCTTGTCCCCCTGCAATTACACAAGAACAATTTGTGTTAGTTATATGGCAAGCATGAAG
ATATTTCATTTGATTTCAGGATTTGGAACTCTTTATTACCTGATTTAAGACCGGATCATC
TTCAGTTCTCACATTGGAAGCAACATTGGCTTCATCAGGAGCTGGCACATTGGAAGCGGC
ATTGGCTTCATCAGGAGCTGGCACATTGGAAGCGACATTGGCTTCATCAGGAGCTGGCAC
ATTGGCACATGGTGGTGGAAGTCCAGCCTTCAAATATTTGCATCCAGCCCTGTTGTGATC
TGGCGCACCACAATATGATCAATGCATGATCACACCATGTCTTGTGATTTTCTTCCCTTC
CTTTCTATGGTCAACCTGTGACAGCCCGAGACCGACNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTCGTCGTGTGACTTATTTTATTTATCGCATCATCATCGCAT