morexGenes - Barley RNA-seq Database

Contig contig_57947
Source Contig contig_57947
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_57947 (7220 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_57947

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70425	1	1673 bp	MLOC_70425.1	Available	Available	LOC_Os02g09200.1, FRAME:-2, EVALUE:0.0, 13102.m01011 protein cytochrome P450 71D10, putative, expressed
CDS Structure of MLOC_70425

Contig Sequence (7220 bp)

>contig_57947 7220 assembly3_WGSMorex_rbca.fasta
AGGCCCCGTCCCCACTAGTGAAAGCAAAGACCCGATCTATCCTACCAACATATTAGATAC
ATCTAATATGATATAAATATGACCTAGAGTGGTGAGTGGTACAAGTCTACAAGATATCCC
GGGTGTCTAATTTTATGATTAGATGTATATATGCTTTATAAGCAAATTATATACTTGGAT
TTTTTGTAGTGTGATGAGCCTTCCTAGTAGAAATGAACATAGGAATCACACACACTCATG
GCACATATAAATTGACTCTTACTAGTACGTAGTGATGTAATTAACAATACTTCTTCATAC
GCCTCCGGGTTCGAGAAAAGCGCATATATAGAAGACATAGTAAATGATAATTCATCTTCG
TAATTTAACGCGAGTGGAAATCAAATAGGAGGCACGCGGACCACAGGGAGTAGATGCAGA
TCGTTCTTCCGCCGGACAGTGAGGCCCATCTTCTCTATCATGTCCAACCCATGAGGCTTC
ACCCCCCTCGGGAGATCCCAATCGAAGTGGTATAGCAGTGCAGCGAGCACGATCTCCATG
CTAGCTTGAGCAAATGTCATTCCAGGGCACATCCTCCGACCCGCCCCAAAAGGTATGTAT
TCAAAGTCTGTGCCTTTGAAGTCCACTGTGCCAGACTCAAACCTTTCTGGTTTGAAATCC
TCAGGGTCTTTCCAGTGCTTTGGATCTCTGCCAATCGCCCACGCATTCACCAAGACCGTT
GTACCTTTGGGTACATCATATCCGAGGATTTTGCAAGGCTCCCTGGCCTCCCTAGGGAGA
AGCAATGGTGCGGCTGGATGCAACCTCATTGTCTCCTTGATGACCAGTTTTAGGTACTTG
AGATTCACTAAGTCATCCTCGGTCACTTTAGGTTTATTTTGAAGGTTGTCGCGTACTTCA
GCTTGTGCTTTCCGCATCACATTTGGGTTCCTCATGAGCTCCGACATGGCCCATTGAAGC
GTGGTAGCTGATGTCTCGCTCCCGGCACCAAATAAATCCTGCAGTATGTCAGTTTATACA
ATTTAAAAATTGCAAGTTCTTCTTAGCATTCATGGATTTTCAACCGTCAGAAAAGTGAGA
CATCAAGTAGAAAATCCTAGAATTATAGCGAATATAGCACATGTCATTTCATGGATTCAG
AGTGAAAGGAACAAGAAGAAATAAATTAAGATACCTAGTGTGTTTCTAACTATTTTGTCA
TTTCAAAATGCTTGACCTTTTTTAATCAATGTTGTTCAAGCTTTTTGTTTCATAAAAAAT
GGGAAACAATTTCAACATTGGCAACAACATATTCATAATACTACTAAGTATATCACGAAA
TGTACTTTTAAAATGAATATAAGTACTGTTGTTTAATACAACACACGCTTTGGCAGTTTC
CGCTGCTTCACCGATTTTGGTGCAGGTGCCACGATGGAGGCACGCGGACACGAGTGGGGA
TCGGACCCTGGGTGTGTAGAAATGACTTCGGATCCACTGCTCGCTTTTGAAAAGCCTTTT
GGGGAGTCTGTCCAAATCGGCTCCTATCAGGTTGCTTTGTATGGCCAAACAGAGGTGTCC
CCCCTAGGCTTACGGATGAGCCAATGCACGGGGATTCTTTCTGGTTGTACAATGTGGAAC
AACTGGTGGGCATGCAAGACGGTGGTGGACAGGTGGATGCCTGTGACAACTTTCAGGTAA
GCCTATCGGTGGATAGCTGCTCCGACGCTCTATAGGAGCATGCAACATGGGGTGGCCCAT
CGAGAGGATGGTGCTGCCCACATATCGGTCAGGCGCCATGCACACCAATGCATGGGGACT
GGATAGTGATGTGCATGAGAAGGTGGCGTCCCTTTGCGAGAAAATGCGCAAGTCCCTCTC
TCCCATCCTCACCAGACTGGCTAATCGAGGGCCGGCAACCAAGACTCATAATCCAAGGAA
GAAGAGGAGGCTAGACATAGCGCCAAGGAGGAGTGCGAGGATCGTCGAGCACTCTGTATC
CAAGCAACAACAGGTGCTCATAAGGGAACTCTGCTTGGCACACGAGGGTGAGGTAATTTA
GGACGAGGCCCTCCGCGTGTACATGGACCTGTTCTCGTGTCCCCTCTTGGATGCACACAT
TGTGACCGTGTTGGCTCTCTTTAGCTCGGAGTCGGCTCTTCCTCTCCAGGAGCCGCTAGT
GGTTGGGGGCGTTGCGACATATGCAGCGTGTCGGTTGCTAGGTAGATCATGGGTCACATC
AATGAGTGCAACACCTTTGAAGATGATTGTGGAATGTCCGTGGATTAAACGCTCCAGCTA
GGAGGAGTGCAGTCTACCAGGTGGGCACCACAGCCAACCCGATCATTGTATGTCTACAGG
AAACTAAGCTGCAGGCCGTATCTTTGGCAGTTTTACAACAATGCCTTGGCAATTAATTTG
GAAAGTTCTTCTATTTACCGGCACTAGGAACCCGCGGTGGGATCTTGGTGGCTTGGGATG
ATACCTACACCCAACTGTCAAACCCCCATTATATGAATAATACTCTAACGTCATTGGTGG
AATCGCCGGATAATCACGCATGGTGGCTCACCTGTGTTTATGGTCCACAAGATAAGAGTG
GAAAATTGGAGTTCATGCAAGATTTAGTGGCCATCATGGAATTACATGTGGGGACATGAC
TGGTAGCAGGAGACTCCAACCTCCTTGCTAGGCAAGAGGACAAAAGTAACGCATTGATCA
ATTGTAGGATGTTGGCAAGGTTTCAGACGAAGATTAACTTGCTGGAACTGAAGGAGTTGT
ACCTCAACGGACGGTGCTATACATGGCCGAATGGAAGGCAGAACGTAACTTTGGAGAAAA
TTGATCATGTCTTTGTGTCTAACGAGTGAGATGAGGCTTTTTCGGCTTGCTTTCTATCGG
CCTTGGGAACAGCCATATCGGATCACTACCCCTTGATGCTGGATATGAATGTGGAGATTA
CCACTCGCAAGAGATTCAAGTTTGAAGCATTTTGGGTAAAAGCTCAGGGATTTATGGAGA
CAGTGCAAGCCGTGTGGAGTTCAACGACGGCTGCTTCTAATGATTATCTCACACTGCATA
ATTAAGAAGCTGAGGGCCATAGTTATTAGTCTACATAGGTGGAGTGACAGATGGATTGGC
AATGTGAAGTTGCAAATTTCCATCGCTTTGGAGGTGATAAAATAACTAGATGTGGCGATG
GGCTCTAGGCCGCTCTCTTCCGCAGAGAGGGATCTTCGCAGTTGATTGAAACGAAAACTT
CTAGGGATGTGTTCGCTAGAGCGAACCATTGCAAGGCAGCGGTCTCGACTGCTACAGCTG
TGGTAAGGGGATGGCAACACTAGGCTTTTCCATCAACAAGAACGTCATAGACAGAGAAAG
AACGACATGAGGTCGGTGAGACACAATGGCAATATCTATTCTGGGCAGGACGAGGTGGCT
TCCGCGGTGGATGCTTACTATGTTGCGGCGTTCGGTTCTTGTGGCCCACCGATACACATA
TTAAACTTGGAGGTGCTATATATGCCACGTCTAGACCAATCTCACCTTGACGACCCATTC
GCGAAGGATGAAGTATAGAAGGTCATCAAGTCTATGTCACTGGATAAAACGCCGAGACCG
GATGGATTTACGGGCAGGTTCTATGTCACATGTTGGAACATCATCAAGGGAGATTTCATG
AAAGCTATGGACTACCTCTAGAGGGGAGATCTCAGAGGTATGGCAGCGATCAACAAATCC
CTTATGTAACTTCAACCCAAGAAAGACGGGGCTTTGGATGTGGGTGACTTCAGGCCCATC
AATCTCGTGCATGGAGCAATCAAGATCTTTGAGAAAGTGTTCTCATCTAGGTTGGGGTGG
ATCTTTCCAAACTAGTGGGCAATCACCAAAGTGCGTTCGTGAAGGGAAGATCTTTGCATG
ACAACTTAATGTTGGTTCAGAGCACGGTAAAGCGGCTGAACGCCTTGAGGAGTTCCACGG
TGTTGCTCAAGCTTGATATATCTAAAGCATTTGATTTGGTGCAGTGGCCTGTCTTACTCG
CGGTGTTGCAGCAACTTGGATTTGGGCCTAGGTGGCTTTCATGGATATGTGGAATCCTTG
CAACATCTACTACCAAAGTCATGGTGAATGGGGACCCCGACGTCACTATCTACAACTACA
AGGGCCTCCAACAGGATGATCCTATATCACCGATGTTATTCATTCTCGCCGTGGAGCCTC
CGCATAGGCTGTTCGAGCTAGTAGACAACAAAGAGGTTTTGGAGCCCTTGGTGCGTGTGG
GTATGAGGAAAGGCTCTCAATCTTTGGGATCATGTGGCCCTGTTGGTCAAGCCTAATACG
ATGGACCTAACGGTTTGCAAGGGCATCTTGGAAATATTTGGTGAAGCGTCACGCTTGCGG
CTCAACATGAGAAAATCGGCAGCACCACTGATTAGGTGTTCAGAGGAGGAGATCACCATG
GCTTCTACTCGGTTGGGATGCTCGATGGGATAATTCCCAATTAAGTACCTTGGCTTGATG
TTGTCGTTGCGAAAACATTCTGCTTCACAACTATAGTATCTAGTGGATCAAATGGCAAAT
CATTTGCCTAAGTGGAAGGTTGTGCTAATGTCGAAGAGTGGAAGACTTACACTGATCCAC
TCAGTTCTATGCGCCATGCCAATTCATGCAATGATGACATTAGACCTCCCAATGAAGACA
ATAGCGGCAATGAACAAAATGTGTAGGGGGTTCCTGTCGTCTAGGAAGGCAGAGGCCAAT
GGAGGGAATTGTGAAGTAGCTTGGGACACAGTTTGTGCCCCCAAATGGTCATGTGGATTA
GGATTGCCTAACCTCAGATGGATGAATGAGGCCATGCAGTCCAGGTGGCCATGGCTTCAA
CGGACGGATACTAATAGGCCATGGAGTGAGTTCAAAATTAAAGTGACACCGATTCTATGC
TACTGTACCAAGCAACAAGGAGAAATACACGCAACGACCAGACCACACTCTTTTGGGAGG
ACCGATGGATTGGAGGATTGCAGATTCAGGAGATTGCTCCATCACTATACGCCAGGATCC
CACCACGTACAAGGTCAACGAGGCTAGTGGCTCAAGCCTTGGAAGATGGGGTGTGGGCCA
TGGACATTGGCCCCAACATTGGGATTGAAGCTTTGCATGACTTCTTCTCGCTAATGTCGG
AGCTGACTTGGAAGTCGAGATTACCATCGCAATGTCGATTTTTTACTTGGCTGGCGCCTC
GGAATAGGTGTTGGACTTCTGGCCGACTCTCCCGAAGAGGGCCATAGCACCAAGATGCAT
GCTCTCTTTGTGACCCGGAGGAGGAAACTATAAACCACGTTCTACTTACATGTGTGTTTC
CCAGGATGGTGTGGGCGACGGTATGTGAAGCCTTGGGGAGACCAAAGTGGACACCGACAC
CATATGATACACTTGAAGCATGGCTATGCAGCAGGGACGGACACACCGGTATGAGCAGGA
AAGATCTACGCACCGTCATAGTGTTGATGTCTTGGGAGTTGTGGAAGCATATACACGCTA
TTGTGTTCAATGGGGCATCACCGTCGACTGAAATCCTACTAGTAAGAGTGAGGTCCAAAG
GCACGGTATGGGCGTTGGCATGACTGTTGAAGAGGAATATGGACCGTTTCTTTGATAGAT
TAGTAAGGCGGATGAGTAGTGAGGAGCAGCGTTGTATGCATGAGGATATACTTGTAAACT
TGTGTGAAGGCATTCTTTGATGTTTTTATTTAATACTCTTTCTGTTTTTAAATACTTGTT
GTTGGGGAGGATTAGGCTAATTCTCTTCAACAACAAGTATTGTGGTATAGAGGGAGTATA
TGATATGCAAATCTAAGAAAAAAACACATAGTACTGTAAAGGACAAAGTATTCTAAAACA
AATTAAGGAGCTGGTGCACTTACAAGTATAACTCCTTTGACCATTCCCATGGTAAGAGGC
ACGTCGAGGCCACCTTCCTTGCGGATCCTCAAGAGCGTGCCCACTAGGTCCTCCCCTCCT
TCCTCCACGTCGCTGTTCACCGAGGGGGCGGCCCTCTGCTCCTCGTGTTGCTGGATCGCG
TACTCCATGAGCTCGAAGCTCTTGCGGTGGTTCTCCTCCGCCAGCCGCGCCGTGCCGCTG
ATGAAGTTGGCGAGCCACGACGAAGGGAACAAGTCGCCAAGGTTGAAGCCGGTGGCGAGC
TTGACCCCTTCCTCGAGTGTCTCCAAGAACTCCTCCCGCCTCTTGAACCTGTCCCCGATC
ATGGCACGCACCGCCGAATCGGTGATGAGCACGGAGATCCGCTCGCTCACGTTCACGGGC
TCCCCGGGCGGCACCGCGGCGACGGCGGCCACGAGGCGGCCGACCTCGTCCTCCCGGATG
TGGCGGAACGACTGCACGCGGCGCGCGCTGAGAAGCTCGAGGATGCAGATCTTGCGGAGC
TGCCGCCACGGGGTGCCGTAGCGTGCGAAAACCAGCCCTTCCCCCTCGGAGTTCATGATC
TTCATGGTGGGGCTCCACGGCCGCGTGGCGAAGACGACGTCGTGCGTCCGCATGATCTCG
CGGGCGGCCTCAGGGGACGTGGCCACCAGCACCGGCACCTCGCCGAGCTTGAGGTACATG
AGCGGTGCGTCCAGCCGGCGCGCGAGGTCGGCCATCACACGGTGCACGAGCGGGTTGCCG
GCAAGGTGGTGCAGGCTACCGATGACCGGCAGCCGCCATGGGCCTGGTGGCAGACGCACG
CCGCGACGCTTGCTGTTGGGCTTGAGGTTGAAGAGGAGGAGAGGGACGAGGAGAGCCAAG
CAGAGGCAGAGGTAGTACGCCCATTGCTCCATTGCGGGGTCTCGCGTGCTCAGGTTCAGC
TAAGGCAGTGTAGTGGGGTGACTTGAAGGCAGGTCCTATATAAAGAGTGCACATACTGCC
CGCGCTGGCGCACATACGATCAAATTCATTTTTTTCAGATTTCCTCAACTTTTTAAAAAG
ATAATACATCATAAATCCAATTGGGCTCCCATGGACGGCAAAATGTTTTTTTCCAAGCAA
AAAATAACCGTAAAAAATAGATGTATTCATGGTCACATTTGTTGAAATTAGTGACGGACC
TTAAGCCCATAAAAGAATTTCAGAAAAATCTCCAAGGGNNNNNNNNNNTGGTGGCATGAC
AAGGTGGTGGGAAGTNNNNNNNCACCCCGCTAGTGGAGGAGAAGTTGAACCCCTTTATAA
GGGTCTCTCTTCCACACGCT