morexGenes - Barley RNA-seq Database

Contig contig_57933

Source Contig contig_57933

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_57933 (4646 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_57933

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70412	1	922 bp	MLOC_70412.1	Available	Available	None
MLOC_70413	1	1279 bp	MLOC_70413.1	Available	Available	LOC_Os07g41370.1, FRAME:-2, EVALUE:2e-25, 13107.m04304 protein OsMADS18 - MADS-box family gene with MIKCc type-box, expressed

CDS Structure of MLOC_70412

CDS Structure of MLOC_70413

Contig Sequence (4646 bp)

>contig_57933 4646 assembly3_WGSMorex_rbca.fasta
ATCTCTTTCCTGAAGATGGGTCAGTGGTTCGATGATGATGGCGGCTTGTAAAACGTGTGC
GTGAGGTGTGCGTCTCAGGTATGCTGCACCGGCTGTTGTTCCCGATATGTTATGTGGATG
GATTAGAAACAACACCGGTCTTACATATGTGAAGTGAGAGCAATCCACATTATCGAGTTT
GTAGGTGTGAGTGGTGGCTTTGGATGGATTGATGTATACTTTTGTTAGACCTTTGTGGAA
TAATTAACAAAAATTGGCTACATGCATCGATTGATGCAGAGACCTCCTTTTCCAAAAAAA
AAAAAGTGCTCCATACGAATATAGTCTAACCTTCGTGAGAGAAGGTTGCAACACCATGGT
TTCAAAACAATAACCTTAAGTACTAAGGGGATCTACTCCCGTGAAACAAGTAATCAGTGG
ATACAATATACTATACAGTGTATACAAACAGATGATTGTGTGATCTGTGTAATTATGGAA
TGATATACAGCAAATATTGTATGCTTAGCTCTTAGAAATGTATATGCAGGTTGAGTATCA
AACGTCAGAAAAAATTGAAAACATTATTTGGGTTACCCGGCCATGTTCACTAACTAATAC
AATGCCATTTTCTCGTACTAGCAGTCTGGTACTCGTTTCCAACCACACATCAATAAAATA
CTATATTGCAGAAAAAAACTACAATTTACCTTTAGAGTCAACTACCAGTCTACCACAAAA
AAATCCTTTATAGGGCTAAAATATTTAGTTCTTAGCAACTGAAAAAATTGCAGCGAAAGT
AAAAGATGTTTTGTAAAAACAGTCATAAGAAGAAAATACACCTTTGATTATGAAACATCA
GAAAGAAGATCAATATACTGTTATCTTACTCATAAAATATAAAGATGTCTATATATATTC
TATACGCCCAAAATCTCAAACAAAACATTGATCAGTTTCAGGCTTTGCGTAACGATTGTT
CTCAGTCTGACAAAACAATCAAACACTACAATCAAAGTTTTCAACCACATAACCTTAATG
TTCATATGGATAAAGAATATTGATAAAAAAACCGAAATATCTGTCAAATAAGCTGATGGC
CATGCATACCAGTTAGATCTGACAAAGACCATTGCGTAATAGCATAGCTGTCTAATATCT
GACGGAGAGATGCAGATGGGACGAGAACGGATATGTGTAGGCTTTGCTCTCATATTAAAT
TGTTTCTACAGTAACCACAGTTAATTTCATATATCTTGTACAGTACTCCCTCTGTTTCTA
AATATAAGTCTTTTTAGAGGTTTGACTAGGGGACTACATACGAAGCAAAATAAGTGAATC
TACACTCTAAAGTATATCTATATAGAGCCTCTAAAAAGAGTTATATTTATAAACGGATGG
AGTAGTATATATGGAATTAACATGACAGTGAAACATTAGCATCAGCATCATTGAATAGCA
AACTTTAGACAATTTAGGAAAACTTATACATCTGATGTACAAGTCCCCCTTGCCGCCATT
TCATGAGAATACCTCCACTTAAAGTGAACTTAGTTTTCGGAACAGATAGCATCAGAAAAT
CACCTTTACTGGCCCTACAAGTGATTAAGGATTACTGGTGTGGCAGTGTACCATTCGCAC
AATAGATGCTACAGTTTATATAGAGTAATCAATCAAGTACACAAGAGTATGCATAATCAT
ATGGTAGAACCTGTAGACAGTACGCAGTACGTAGGTTAATTACTATATGGGCAATAGAGT
AAGGGCCAGAAACTCCGGTGCTATTGGTTAATTGAACAACAATCGATTCCATGATTGAAA
CAAGGAGAACTAGATTACCCATCCAAGCATAACCCACAAAAAATAGCACGAAATAATAAC
CTCGCATGCACCGAGCAACATTTCCCGCAGCCAAATTCCCCACCGGAACTATCGAACGAG
ACAGCCACTTGTGGAATGAAGATGAACACAAAGCAGCCCAAATCAATCATCCGGTTCCCC
GAATCCTCAAATAGAGCTCGTGGGAAGGAGCCGAGTGGGTGAGAAAGGAGGGGTAGCTGG
GGGCGCGTGATATAACCTGTCCTGGCTGGAGTACTCGTATAGCTTGCCCTTGGTGGAGAA
GACGATGAGCGCGACCTCGGCGTCGCAGAGCACGGAGATCTCGTGCGCCTTCTTAAGCAG
CCCGCTGCGCCGCTTGGAGAAGGTCACCTGCCGGTTTATCTTGTTCTCGATCCGCCGCAG
CTGCACCGGCCCGCGCCCCATCTCCGCCCTGCCTCCACCCCGCCCCCTCCGGCTCTCTCG
CTCGGCGGCGCCGGCCCCTCTCTCCCGGCTAACTAGCTAGCTGCTACGGCGATGTGAGGA
GGAAGACTGAGAAATGCGGTGTGATGGTGTGTGGAGCTCGCAGGAAATGGGAGGGCGAGG
TGGGCGGTTTAGATGGGGGGCGAGGGGTGGTATGGCGAAACCGGACTGGTTTCCCGTGGC
GCGCTGTCGAGTTTTGGTTGGCCGAGATGATCTCGAGGAGACGGGGAAGGATCCCGGCCG
TTGAATCGGGCGGGGGTCGTTATTGCGACCTTGGTGCTGGTGGGTCCGCGGGCCCGTGGC
GCTGGTGCACCACAGGGGTCTGCCTCGCCAACGGCCGGGGATTGGTCGCCGGAGCGAGCG
TGGTCGGGTTCGCTGTGCGAAAAGGTTTTTTCCAGGCCTCGTGTGTGGTCCGCTGTTGTC
GGGTACAAGGGAGCGAGACGGCAAGCGACATTTGGCATGGACGAGGTGGGTGACCCCGTC
CTGCCAGTGGGGTCTGCTCGGTGGAGACTGAAGAAAGTCTACACTGTTCAATCGTGGGTT
GTATCATCGTATGGAACTATGGATGATAACCTCTATGAATGCTAAAAGGAAATACATCAT
ACATTCAAAAGAAAAGGGATCCTGCATGACTGTAGTAGTGTTCGGATAAGAATCTCTTTT
CACTCCGTTAATGGAGCAGGAATTCATTGTCATTCAGTGTGTTCGATGTTCAGTTATCAG
CGTTCCAAATACTTCTTTTGTTTTTATTTACTCCCCATATTAGTTTCGACTGTAGTCATA
GTTTGTAGAAAACAATATGAATATTTACAGTAAAAGATTTATATGATGTGAAACTATATG
CAATGATGGATCCTATGATATAGATTTGATGGTTTATATTCTACTCTCTCTGTACCTAAA
TAACTGTAGTTGAAAAGAACTATATATGTATACCTAAATAATTGTATTTGGAAAAAACTA
CAGAGGGAGTATTTTAGTTTTTACAAACTTGTTAAAAGTATATATAGTGTTTCACTTTAG
ACAAAGATAATATGGGGAGTAAATAAAAACGGAGAGAGTATATCGATACACTGCAGACCG
CTAAATACTCCAGCCCTTGTCATATTAGGAGAAAATCAGTGGGTTCTTTAGTTAATGTCT
TCTCGACACATAGAGAAAATGTAGTGAAAATTAACATCTCTACCACGTGAGATGGGCTTC
TGAACTCGTTCATGTGTTTTTCCGCAAAAAATAAATAAATAAATCATGTGTTCTATTTTT
TCGTATTTCTCAAAAATGAGTTTGAGACACCTAGCTAGCATCTCCATCATTGTGATGCAC
ACAACTATAACGAGGCCAAAGTCATCAACAAGTAGAATACAAAACAAAGGCAACTATGGC
GAAACCATTACATGATACGGATATAATACCTATTACTAACTCGACTTCATTCGCTAGAAT
GCCTTTAAGAAGGACCAATGGCCTCGCCACGTCTCGCTAGAGACGGACAGGACAAGGATT
TTCATCCTGACGATGTACTTATGCCCCTTCACCGCACCCCCACCCCTGCTCTGTGTCTCG
CTCAAGCCACTCAAGGGGTGAACACACTAGCCTCGCCATAGCCCGCTTCCCCTCCCCCTT
CTCTCGTCACCGCCATAGACAACGGTCAGGCAATCCTGGGGCACCCCGAGGAAGATGGCG
GCGGGGGCATCCGTTGCCCTACTTCACCCGTGGTGGGCTTCAGATTTGGGGGTGGCAACC
TCGCCTCGTGAGGCACCACCGGATTTGTGATGAGCGGTGGTGCGGGCGCTGGTTCCAACG
TCCTTGGCCACACAGGTGGCGGCATCTTGGACGATGGGGGTGTGGCGTGCTGGCTACACC
CGCGACGGCTGTGCCAGATCGGGCGTCTGATACGTCTCCAATGTATCTACTTTTCGAAAC
ACTTTTGCTCTGGTTTTCGATTCTAATTTGCATGATTTGAATGGNNCTAACCCGGATTGA
CGTTGTTTTCAACAGAACTACGTTGGTGTTATTTTTATGTAGAAATAAAAGTTCCCGGAA
TTGGACGAAACTTTTTGTGAATTATTTTTGGAATATATAATGAATTATGGAGCGAAGATC
ACCGAAGGAGGAATGCATGTGGGCCACAAGCCAACAGGGCGCGCCCACCCCCCTCAAAGC
GCCCTGAAGGCTTGTGGGGCCCGCGTAGCTCCTACGACCCTAATTCTAGTCCTATAAAGT
CACATCTTCAGAGATAAAAACCAGAGAGAATATTCCATTGCGTTTTACGAGATGGAACCG
CCGCCACCTCCTATTCTTCCTCGGGAAAGCTGATCTGGAGTCTGTTTGGGGCTCCGAAGA
GGGGGATTCGTCGCCGTCATCATTCG