Contig Data
morexGenes
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Map Locations of contig_57899 (6817 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_57899

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70397 1 647 bp AK252927.1 Available Available None
MLOC_70398 1 181 bp AK373353 Not available Available None





CDS Structure of MLOC_70397






CDS Structure of MLOC_70398






Contig Sequence (6817 bp)

>contig_57899 6817 assembly3_WGSMorex_rbca.fasta
ACACACCTCCTTGTATCTCCTTAAAGGCCCCTTATGCATAATTTTAGGTTTTAGATTTTA
GTTTTTGTTTGATTGAGTTTTAATGCTTGCTACTCTTTGTCATAGAAATGAGAGTCATCG
AGACCTCTTGTACTATGCGAAATCGGAACCCAACCGTGTTAACCAAGTACTTCAAAATAT
ACCTGCAATTCACATTGCAAATCTTAAATTCTTGCTACATATGGACATTGATCTTCATGA
TCAGTTTTACTGCGTTTCCAACACCGTTAATAAGTATACCGAAGTTAGTTTAGCGATTTG
CTAAGGCGCAATGTCGACCATCACGCATGTACATCATCGATCACCATCATCCATCAATTT
ATGATCACGTCGTAGATGATCTTTTGTGGTGTGGATAGTACTTCTTTGACTCGGTAAGAT
CTCACTGATGTAGTAGATGGGTTGATGTACCTTCTATACACAACATTCTTTTTCGCATTC
CGAAGCCAAGACAACCTCGAGCACTCGATTGATGAGTCATATGTAGAGCAACATGGGCTC
CCCTTCTTTTGGTGTGACTAGGGCATATGTTGTAGATATAAGGGACTTAAGGTCATCGAA
GGCCTCCTGGGCTTCATCGGTCCACCCAAAAGAGTTGGACTTACTGAGGACTCGGTAAAC
ATGTAGAGCCTTCTCACCAAATTTGGGGACAAACCGAGTAAGTGCACCCATGCAACCAGT
AAATCACTAGGCATCCTTTAGATTATTGGGTTTGTCCATCTTTAATATGGTGTTGATCTT
GCCTAGGTTTTCCTTGACTCCCTGTTTGGAAATGATCAAGCCAAATAACTTTTCCAATGG
GACCCCGAGCACAAACTTCTCTGGGGTGAGCTTCATGTTGACCCACTAGTGAATATCCCT
ATAAAGTCGGTGAGGAGATCCCTCCTTTTCTTTATGGGGCCTGCTACGCATCCACCGGTG
GATGTTTACTAAACATCCACCACTTGGAGGGCCGTCCGATCTACGCGTAGCTGTCCGATC
TGCTCCGGCCAGGCACCCCATAATTCATGAAATGATGGCTAAGTTGCAGAAACTTTCGCT
TTGTTGCAAGAAATAAACTTTGGACCTGTTAATTTTTGAAACAACGGTCGAGTTTCAGAA
ATTTGCTTGTTGCAGGATTTTTTTTGTTCGTCTTTCTACAACATAGGTACTTTTGCGGGA
ATTTTTTTGCAACAAAGGTCATGTTTCAGGAATTTTTGCAACAAAGGTAAAGTTGCGAAA
AAAATTGCAATGTTCATGGGCGGCATGTGGCGTCGCGGCCGAGCGGCCACGCCCCCTCTC
CACATGCTCCCCTCCAGAACCCCACTCCTTCACGCCGCCACCTTCCTCCCTGCAAGCACC
TCCCTCTCCACAGCCACCTTCCTCCCTGCGAGCACCTCCCTCTCCTTCACCGCGCCCGTG
CCCCGCAACTGGCGCATCTTCGCCGCCGCCGAGGAGGCGCCCACTCCGGTGGAAGCCGAG
GTGGAGGAGGTGATAGAGGATGACGTGGTTCCGGAGCTGCGAGGAACGCCTGACACATGC
CCACGTGTCGATCGAAGGAGGTGACGGATGTCCTCTGCTCGATCTGCCAGTTAAGGGATA
GATTTTTCCTTTCTTTATCCTATTATGAATAATGAGTGGGTTTATGAACCAATTTGGGTG
AAGAACTTCTTTGGTGAATCTGGCTTTGAGGGGCCATGCAATCTCATCTCTGACGGTCTT
GGGCCTATCTTCAGCGAAGATACGAAGAGTCTTCTTGACCGACTCCGCATCTTTGATGGC
ATTGAGGGAGTACTCGATAAAATCCATTGGAACACCTATCATGTTAGATGGCTTGCATGC
GAAGATATCTCAATTCTCACACAGAAAATCAACAAATGCACTTTTTGTTGGGCCTCAAGT
TAGGTCCCTATCTGGGCCATCTTGGATGGGCCCTTAGGGTTGACATGGACCTTCTTGGTG
TCCTTGGCCGACCGAAAAAAGACTCGGTAACTACCATGTTGCTCGACGGAGGCTGCTTAT
TGTCAACCGACTTCTGGATGGTGACTAGCTCCTTAGGTATGACAAGTGACACTGCAATAT
TCATATTGATAACATTGTACTGATTGGAGCGCTCAAAATCACCTAAGATGGTGATGACCC
CATTGGACCTCACATCTTAAACTTGACGTAGACATAGCATGACCTAGCCATTAACTTGGC
ATAGGTAGGGCGGTGTCACATCCCAAATTTTATAATTTGGATATGAACACATCATTCATG
TGCATATCATATTTTGATTGCATTTTGTGTTTTTATAAACCCTAATTCATTTTAGGGATT
TATCAAATAGTCCATATTAAATCCATTTGTAAACAAATTAATTTTCAAACCTGCATTGGG
CCTAGACTTTTTTCCCGGTGATCTATAATAGCCCTAGTATTTTTATACAAGTTTCTGAAC
TTTTAGAATTTTAATTGAAAATATTTAAATTCAATTCAAATCAATAGTCTAAATGTGCAA
AAGAAACTAGAAAAGGGCTACTGTTCTTTGGGCCTCAACACTTTAGGACCACGACATAGA
TGCTTAGCTAAACTGGTGCGTGTGGTTGTGTTTAGTCACAACCATTCAATCCTATGAAGA
TCCAACGACTAATGGCGCACCTCAACCTCCAGCTAAGAACATCAGGTACACTCGCGAGCA
TGGCTCAGTGCACATTGAGGAATCGACCCACCGCCGTAGCCACTGCCACCACTATAAGCA
AGTGATTTTGACGAGAACAAGTAGCTCTCAAGCCTGCCCTTTCACCTACTTGCGCTACGT
GCTCTACCACACCTTTCTGACATGTCGCGCATGCCCGAATCATACTAGGAGGTGAGTCCA
GGACCACTCCATTCCCATGAGGTAAGGACGAATCTGAGCCCGTGACCTTGTCCATTATTG
TCACCCCCAGGATCGTCGGTTCATCGACACCGTCCAACTCCCAAAGCCCGCAATCGCTTT
TACAACTTTGACAAAAAAATCCTAACCATTTTCGTCGAGTCCTGCCATTGACGTCGTCAC
CATTGTATTATAGTGTCGTCCCGCGCCGGCATGGATAACATATACAACTCATGGCCCTAT
GCATCTTCGGAGTCATGCACCGCCGCAGTCATTCTTATCTCGGTGATGAACTCTGATCTA
CTGAAACCCTAGAGTGATGTGGTCTCGCCACAGCCATCCATCGGCTCTGATATGACTTTC
ACGTTCTATCTAGAACGAACTGGTATGTTTCATTCCTCGTCTTCTATAGTCACTTGTTCC
AATGGCCCATATTGATGGCATTATCTGAAATTAAATGTAATCAGTGTTAAATAGGTAGTT
TTGTAGAAAGCCCTTGCACCTTAGAACCAACATAATAGGCCAAATGAGGTGATTCTTTTT
TGCATATTGACCCTTATGGAATTCTCTAGCAAAAAATACAAATTATTTTCACTTCCACAT
GATTCAAATTTGATTTATTTAAACATTGAATATGAACCTTTGTAAGGGGCAAAAATCCAA
ACCATGACTTCAAATGGAGTTGATCTTTTTACAGATTGATCCTTAGTATGCAAGCTTTCA
AATAAGATGATTAACACAATTAAATTCGAATTTAATTAAATATTAGTATCAATACTTGTA
GCAACCATTTTATCTTAGTTTTCACTATTACGCACGCCAGTTTCAGAAGTGCCGCCATGC
CAAAGCTTTTGAAATGTGAATTGAATTGATCATAACTTTTGATCTATGATCTGAATTCAG
TAATTCTTTTTTCCTTGTGTTCCAAAAGTTTGCAAGTGATCGTTATAATCTTTTTACCAA
GTTTGAACTTTTCCTTATTTTAATTTGAAATAAAACCATATTTAAACCTAGAATCCAAAC
CACAATTCCAAATCAAATGAAGCTTTTTATAAATTGATTCAAATGATGATCACAACCTAA
TTGAATCACTTTGGATTGAAACCCAACCTACCAAGTTTGAATTATTTCAAATTTATGACT
TCCAAACCCTTTTGAATTCAAACATAAATATTCTTTTACATTGATCCAAATGTTGCACTC
AAACAAGCCAAACATTCAAAGTCAAATAAGGGCATTCTCATTTACAAAGAGTTGGACTCG
ATAACTGTTCACAAGTATGAAAAACAAAGAGTTGATGAAGGAGACAAGGAAAGAGATGAG
TGTGAGAAAATCAGTTTGAAAAACAAACTAATAGTCATTCCCCACAACCGTGAAATCCTG
AGTTTCTAAGTTTTTTTAGGGCAACGGTAGCCGCCGGCGCGCCGGCCTAACAGTTAGGCC
GGTCGAGCCCCAACCCTCCGATGCAGCAATTTTTGTCCGTTGGATCTATCCCTCCGCTTC
GTCCTCCTTGTGAGTTGTCTTCCCCAGAAAAAATTACAACGACCTGAATGCCGAGGACAC
CCTGTCATACCCCCGCAAGAAAACGATCGAGCTTGAAGCACCACCCTGACGTCCTCGTCG
CCGGTCGGCGCCATGGCCGGCCGTCCTCGTCGCTAGTTGTCGCCCTGGTCCCCGACAACG
CCCATGCCACAGTTGCACCCTCTGATTGCAGCTCCACGTGGCGACGGGCTGTAGCTCGAT
GGTGATGCAGGACTGCCATGTGGTCGGCCCGTAGCTCCCCGGTCTCACTGCTCGCAACAT
CGTCAGCATGTCGTATCCCTTGAAGCTTTTTATCATGTGCTTGAAGCTTTTTTCACGATG
GTTAAAACTATTTTCACGGATCAAAGCTTTTTTCCATCGCAATTGAAGCTTGTTTTCCCG
CAAAAAAAAATTGAAGCTTTTTTCATGATTGAAGCTTTTCACACACCGGTTGAAGCTTTT
TATCTATGATTTTGTTGCAACGAGCATCGAGTAAAGCTACAACCAGTGGCCATTTTTGCT
ACAACCAGGGAGATGACAAAGTATGGCCGGCAACAACTGGTTACGAATTTGTTGCAACCG
GCAATGAAAAAAGCTACAACCAGCGACTGAATTTGCGGCGTGCGACCAGGGTGACCACGA
CGACTAGAATTTTCTACAACTAATGCGCTTTTTGCTACCACTGTGGTGACCCCGTGCTAC
GAGCGGTACGGTGACGGAGAGCTACGACCTGGATAACAGACATTTTGGAACCTAGTGGCC
GGAGACTTGTGTGCTGGTGGTGTGGCCGAGGTCTGATGCCTAGTGGTGCAGGTGCCCTTG
GCGTCCATTTCGTGAGGAAGAAGCAAGGAGAAAACAATTGGAAGCAAAGTGGTCCCATCG
CCTAGTTTATATCCCTGAGGGGTGCTTCCGTCCCTGGGTACTCGCACGATCGAACGCCCC
ACGATCGAACGCCCTGCCCCTGGGTACTCGCACGATCGAACGCCCCGCATCTGACCCAAA
GTTCGGCTGATGCATCGGGTGTACAACCTTTTTTTATATACACGGGTTGGCCAGAGCAAA
ATTTTACTCCCCTGTCCCAACATAACAACTTTATACTAACTTCAATACAAAATTATACTA
GTAAAGCTAAGACACAATTTTATACTAACTTCAATACAAAATTATACTAAAATTAAGACA
TTTATTTTTGGACAGGAGGAGTATTTGATTAGATTGTTTACTAATTTGTACAGATTGCAT
TTTGTATATGGTAAATCCAGAAGGTTAGATTAGTAAGTGTAAACAACAAATGACAAGACA
AACACCTTGCAAAGATTCGACAATAACATCTCAGTATTATATGGTAAATCTTTTCAGGAC
CCGACAGTCATTTGCTATGCAAAGTTTACGACTTTGCTATTCATAGACACATAAACTCAG
CTTGTATATATGGAACCTAATTAGGGGTGCGGTACAGCTTGCCGAAAACATGGAGCACAG
CAACAACCGCAATAAACCCTATGCTCATGATCAGAACAGCATTTGGGGACATCTTGCGCC
CAGCAGCCTCATCGGTGTAGAACTGAAGCATTGTACTGGCACCGGCACCACCTCCAGCAG
CAGCAGCACCACTGGTGGTTCTACGCCTGCGCAAGCTTGCAGCTGCAGCTGCACTCCCTC
TTGCAGGGGCGTCACCATTAGCCACCATCTTGTTTTATCTATCTGCATGAAAGTACAAGT
CTTGATCAGAAGGCATGTAGCACTAGTATCATAACAGACAAAAATATACATGGTGTTCCA
ACTGATCAAATGGCAGGCATAATCAGCATGTTTGTAGGAGAAGTACTCCCTCCGTTCCTA
AATATAAGTATTTTAAGAAATTTCACTAATGGTCTACGTACGGAGCAAAATGAATGAATC
TAGAGTCTAAAATATGTCTATATACATCCGTATGTAGTTCACTAACGAAACCTCTAGAAA
GACTTATATTTAGGAACGAAGGGAGTAGTATATAGAAAATGAGCAAGCATTGTCATATGG
CATGAAATGGTGTCCGCTATACACCTTTTGCTCACTAAGAGAAGGGTAAATACAGTGTGG
CATACTGAGCATGTTTTGCAGAACACGTAAAAATACAGATGAATCCTTGCAGTTGTAGGT
ATGCTGAAGCTGAGTAGAGAGTGCTTTAATTAATTTCAGTCGTGTGGACCATGCCTTAAA
TATAATGTTAAAACATCTGTCTAAGGCCCTGTTTGGAACCATCCNNNNNNNNNNNNNNNN
NNNNNNNNNTCTATTATGTCTCCAAACAGGACAGCTTATGGTGTAGATTATAAAAACTAG
ATGACTAGATTATTAAAAACTCATAATCTNNNNNNNNNNNNNNNNAATCAGATTATGGAT
TGCTAATGACTCATTACCCTTATAAAGTTGGAGATAA