Contig Data
morexGenes
Links



Map Locations of contig_57850 (4720 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_57850

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70373 1 758 bp None Available Available None
MLOC_70371 1 887 bp None Available Available None
MLOC_70372 1 1577 bp MLOC_70372.1 Available Available LOC_Os07g33760.1, FRAME:+3, EVALUE:9e-108, 13107.m03436 protein retrotransposon protein, putative, unclassified





CDS Structure of MLOC_70373






CDS Structure of MLOC_70371






CDS Structure of MLOC_70372






Contig Sequence (4720 bp)

>contig_57850 4720 assembly3_WGSMorex_rbca.fasta
CTAGGGCATATTTCCAACAAGGAGAATGTACATGAGAATGTTAACACTGATCATCCTTCT
GAGAGGAACACATGAATAGAGCAACCTAGAGCACAAAGTCAAAGGGGCGGGAAGAGAAAG
CCTACTGACAAGATGATGCAACAAATGGAAGAAATGATGGAAAAGGCAAAGAAAAAGAAG
TCCAAAATGGTTCTTGATGAATTGGGGATGTTGACTTCCGAGTGATACTAATTGTAAGTA
TTTCACAAACCCTATTGTTTGCAAATAATTAGAGTAGCTCACAACATTGTTGTTTTTTTA
TTAGCACCCCAAACATAAAACTACGAGGCCACAATTGGACCCAACACAATTGAAAGAAAG
CATGGTGCACATATTGTCACATGAGGTAAATGAAGACTCATTGAATTTCGGTTTGTCTTT
AAGAAGTGCACACTAACTGTTGCTATTTATAGGGACCTTAAAAAGGAGTTCCTATTTGCA
GGGTTCATCAATACCACAAGAAATTTCATTTGTAGCAGAGAACAGAGCCAACATATCTGC
TGCCACTTAGGTTCCACATCCATCAAGAGGAAGAGGAGCTGCACAAGCTTGGAGGGGTAG
AGGCAGAGGTGGAAGAGGAATAAGGTCAAGGGGAAATACAACTAGAACAAGGGGATGGAA
AGAGCAAGGAAACCGACAAATATAAGGGGATTGCAGTGGCTAGTATTTGGTGAAGGAACA
AACACACAACACTCACAAGAAGAGCAAACGGAGTTTCAGTCCACACAAGGAGCTCCAGCT
GATGAAGAGTGAATTTCAAATGCTCTCATGTTGCGCTGCTATATTGTAGAACTAATTGAT
CATGATTGCAATTCTTTTATTTTGTGCTGCTATATTGTAGTACTAAGTGAAATGCTTTCA
TTTGGGCTGGTGTATTGTTGAGATCTTTATTTAATCAATATTTGCACTCTAGTTTGCTCC
CATTTGTGCTGCTATTTGTATAACTAAGTGAAATAGGAAGCCATTTCAGAACATGATATA
ACACATAATATAAACACGTCGAAAGGTCAAGCCATTTCTTAACATATCTTAAACTAACAA
TTCCTGCCAACAAACACATAAGGTAGCTATTACAGTGCCACTTCTTACAATAACAACTCA
CTAGTAGAAAACAGGACTTTCATCCTAGCCTCGATCGAGCATTAGTCCCAATCGCTTTAC
AAACCAGGATAAATGCGGCACTGCCATCTTTAGTACCGATTAGTGTGGGACCTGTTGCCC
CGGTTGGTGACACTAACCGGTACTAAAGGGGACACGTCAAGACCGACGCCCATTTATCCC
GATTAGTGTCTCCAACCAGGAATAAATGTCCATCTTCAGTCCCGGTTTTAGAGACTATTC
GGGACTAAAAAATTGCCTATATATATGCCCGTGTCTGCCCTTTCCTCTGTTTTTCTTCAC
ACAAGGTGGGAGGTGTGTGCTAGTTTTTTTTTCTTTTGTATGCACAAAAGGTGTTTGATG
AAATGCGCGAGCGCTTGATGCCACTTGAGTTCACAAGCCACGCTTAAGATTTCTCCACTT
TCTTTTTGCATATATGTAGGTGTGGTTTAATTGAGGGTGTTGTCCTGTCCCCGTCGTCAG
CGCCCTTGATCGCTCGCGTCTATCCCGTCGCCAGCTCCACCGAGGTGAGCCCCTTGTTAT
AATCTTTAAAGAAAACTTACTTGTAATATTTTTTGTTACTTGTGTATTTATCTTACTTGT
ATATTATTGTTTGTTAATATATAGTGTCATGGTTCTGATATCCGCCCCCGTTGGCTCTCA
TCGGGTCTATGATTCGGTTGTCGTATATTATCTTCTATAACTATAATTTGTTTCATTTTG
TGTTTATGACAATTATGCCGACCAACTTGACGTAGATGTCTTTATCTAGGAGGTATGTGA
ACCGGAAATTCCAATTCACCCTCTTATCGAGAGGTTATATTTAGTTGAAAAAGAAAACCA
ATATTTGAAAGAAAAATTGAAAAGAGTTGAAGAAGAGAATATCAAATTGGAGTTGCATGT
TATCGATGTCGTCGATCTACACAAGATCCTGATGAATGCAATGCGCTTGAAGATTATAAA
GATTAGAAAATATGCCATTGATAATGTGGCTTGGTATCATTATGTTGTTGGATCAAGTGC
CAAGATTATAGGCCTATTAGCATCATTCACGCCATCGCCAAAATCATTGCCAAGATTCTA
CCCCTTCATCTTACACCACACATGAACGCACTGGTCTCCAACGCACAAACTATGTTCATA
AAGAGAACGAGCATTCACGATAATTTCATGTATGTTCCCAACTTTGCGCGCCGACTACAC
AAGTGCAAGACACCGACCCTATTGTTCAAGCTCGACATTGAAAAGGAGTTTGACTCTCTT
AAATGGGATTACATTTTGGACCTTCTGCAACGCATGGGGTTTCCAGATAAATTCCGTAGT
TGGATTGATGCACTACTCTCCTCGTCATCCTCTCACATCCTCTTTAATGGCCTGCCGGGT
CACGATCAGGCATGGGTTTGGATTTTGCCAAGGGGACCCTGTTTTGCCGCTGCTTTTTGT
CCTCGCAATACACCCTCTTCACAACATTCTTGACCTGGCAACGCGCAAGGGCATCATATA
CAAGTTCCAAGGACGAGGGGCCATGGTGAGAACCTCCCCCTACATTGATGATGCGGCTGT
TTATATGGCACCAATTAAGAGTGATATCGACAATTTAGCTGTGATCATAAAAGGCATTTG
TGACGTGACGGGCCTATGCACCAACTTCCATAAAAGTTCAGTGGTACCCATTCGATGCGC
TAATCTAGATCTAGGGCGCATCCTACATAGTATTCCGGCTTCAAAGACGTCCTTCGCAAT
CAGATATTTGGCCCTTCCGCTCTCAGTGCGGCAGCTGGTGAGAGTTGATTTTCAATATAT
AGAGGACATGGCAGCCCGGAAATTCATCACCAGGGACGGAAGAAACATAACTACCATCGG
GTGCATGCATGGCCCTAGTTCGTTCTGTCATCACCTCCTAGGCCGTGTACTCCATAACAC
CCCTCATTATACCACAGAGCTCCCTCAACAACCTCAACAAGATTCAGCGGGCTTTTCTTT
GGTCCGGCTCAGATAAAACTACCGGTACAAAATGAAAAGTAAACTGGGACATTGTATGTC
GACCCCCAAGCTATGGAGGACTAGGTGTTCTCAACACCGACAATTTTTCTCATTCCCTGG
GACTGCGATGGCTCTGTTATGAATAGAAGGAGCCGAGCAAACTATGGGTGGGACTGGAAA
ACCCTTGCACTTAGGAGGAGCGCAATTTCTTCTACGCATCCACTAATATCGTCATGGGCA
ATGGGGCCAAAACACCTTTTTGGGACTCGTCATGTCTGCTTGGTCGGAAGACAAAAAAAT
TGCCCCCCCCCCCCACACACACACAATTTTGAGGCCCCGAGGAGAAAGAACTGTCGCCAA
GCCTCCTAAAGAATATTGTGGACGCCCCCCACATTTTCATGGTTTGTAAGGTGTGGGCGC
CTATCAAAGTCAAATTCTTCGCTTGGCTTGCTCTGCAAGATCAGCTTTGGACTGCTGTCC
GGCTTGCACGGCGTGGGTGAGCAAACTGTGGCCTATGCCCCCTCTACAATTGGGAGCAAG
AGACGGGCATCCACCTCTTCGTGAAATGTCGCTTCACTACTAGGCTTTGGCATTTGATCA
TTGTTAAATATGGTATAGTACATATGGACACATATGACTGGCACCTTGTGGAGTCTCTGT
TGGAGTGGTGGGATAGGTGAACCAATTTGAGCAACCCTGATCGACGCACCATAACTTCTC
TAACCATGCTGGTGTCGTGGACCATATGGAATCAGAGGAACGCTAAGGTGTTCCACCATA
AAAATGAACCGCCGCCAAGCCTCCTAAAGCATATTGTGGATGAGGCTGGCCTTTGGGTAA
CGGCGGGGGCAAAGAAACTAGGGGAAATTGTATTACGCGAGTAATTGTCCTGCCATTTTC
ACGGTGTTCTTGTAATACTATGTAACTTTATTCTCCTCTCAATTACTTGATGAGGCAAAT
CTTTTGCCTCCGTTTCGGAAAAACAAGTGGATCCATGGCCTGGGTTCATTTTTAGTAACA
GACGACTATTAAGCGTTTCATAGAATAAAGCCAGTAGGAGTTTTTGTTGGTGATTGCATT
CACTAGAATTATGTGTGTTGTCAAACAGTTTTAGGGTGTGTTTAGTTGAGGAACCAAAAT
GACTGAAATGTCATAGTTCAGTTCCCAGTAAATTGGGTTCATTTTCATATGTTTTATTGG
AGCAATAAACAGGATTGGAATAGTTGAATAACGACGCACGCAGGCATATAGCTGAGTGTT
TTTTTTAAAGGAGGTAGAGCTGAGTGTATGATCCATATATCAACAGTGCACATGTTACAA
AGTACAATAAACTCATAGGTCCCCTCAAAGGGAGTGAAGGAACAACCAAACATCGATAGT
ACAGTATGGCCGGCCATGCAGAACTGGCTCAACATACGCACTCCTCTCTCTCTCTATATC
CCACATGAAGATAATATTGTGCATTTATTCATATATATGTATGTATGTGTGACCTCAACG
TACTCAGCGTCGATCGCTGGGGCTATAGGCAGCAAGTGGTTGATCAGCGAATCTTAGAGC
AGTCCACGGAAGCACTGATGGCGTAGGGGACGCTGACGCC